RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 TCRBV5S4A2TA0A5A2 114 aa18.5■□□□□ 0.55
SDC3-203ENST00000471567 ADD2P35612 726 aa18.5■□□□□ 0.55
SDC3-203ENST00000471567 PICALMQ13492 652 aa18.5■□□□□ 0.55
SDC3-203ENST00000471567 UBE3CQ15386 1083 aa18.5■□□□□ 0.55
SDC3-203ENST00000471567 ZFPM1Q8IX07 1006 aa18.5■□□□□ 0.55
SDC3-203ENST00000471567 KBTBD3Q8NAB2 608 aa18.5■□□□□ 0.55
SDC3-203ENST00000471567 MAP2K2P36507 400 aa18.49■□□□□ 0.55
SDC3-203ENST00000471567 DYNLL1P63167 89 aaKnown RBP18.49■□□□□ 0.55
SDC3-203ENST00000471567 NOGQ13253 232 aa18.49■□□□□ 0.55
SDC3-203ENST00000471567 MIGA1Q8NAN2 632 aa18.49■□□□□ 0.55
SDC3-203ENST00000471567 COL2A1P02458 1487 aaPredicted RBP18.49■□□□□ 0.55
SDC3-203ENST00000471567 ATRNL1Q5VV63 1379 aa18.48■□□□□ 0.55
SDC3-203ENST00000471567 MAGEB6P1A0A0J9YX57 407 aa18.48■□□□□ 0.55
SDC3-203ENST00000471567 FAM155AB1AL88 458 aaPredicted RBP18.48■□□□□ 0.55
SDC3-203ENST00000471567 SLC10A3P09131 477 aa18.48■□□□□ 0.55
SDC3-203ENST00000471567 LRRFIP1Q32MZ4 808 aaKnown RBP18.48■□□□□ 0.55
SDC3-203ENST00000471567 SH3BP5LQ7L8J4 393 aa18.48■□□□□ 0.55
SDC3-203ENST00000471567 ZSCAN29Q8IWY8 852 aaPredicted RBP18.48■□□□□ 0.55
SDC3-203ENST00000471567 ANKRD13AQ8IZ07 590 aa18.48■□□□□ 0.55
SDC3-203ENST00000471567 CSRNP1Q96S65 589 aa18.48■□□□□ 0.55
SDC3-203ENST00000471567 RIOK1Q9BRS2 568 aaKnown RBP18.48■□□□□ 0.55
SDC3-203ENST00000471567 ZNF341Q9BYN7 854 aa18.48■□□□□ 0.55
SDC3-203ENST00000471567 OSBPL5Q9H0X9 879 aaPredicted RBP18.48■□□□□ 0.55
SDC3-203ENST00000471567 FZD1Q9UP38 647 aa18.48■□□□□ 0.55
SDC3-203ENST00000471567 DDTLA6NHG4 134 aaPredicted RBP18.47■□□□□ 0.55
SDC3-203ENST00000471567 ZFYP08048 801 aaPredicted RBP18.47■□□□□ 0.55
SDC3-203ENST00000471567 MAP3K9P80192 1104 aa18.47■□□□□ 0.55
SDC3-203ENST00000471567 MAP3K10Q02779 954 aa18.47■□□□□ 0.55
SDC3-203ENST00000471567 GRM1Q13255 1194 aa18.47■□□□□ 0.55
SDC3-203ENST00000471567 RASAL3Q86YV0 1011 aa18.47■□□□□ 0.55
SDC3-203ENST00000471567 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.47■□□□□ 0.55
SDC3-203ENST00000471567 TGFBRAP1Q8WUH2 860 aa18.47■□□□□ 0.55
SDC3-203ENST00000471567 SLC10A4Q96EP9 437 aa18.47■□□□□ 0.55
SDC3-203ENST00000471567 DHX36Q9H2U1 1008 aaKnown RBP18.47■□□□□ 0.55
SDC3-203ENST00000471567 OSBPL3Q9H4L5 887 aa18.47■□□□□ 0.55
SDC3-203ENST00000471567 NEFLP07196 543 aa18.46■□□□□ 0.55
SDC3-203ENST00000471567 MIGA2Q7L4E1 593 aa18.46■□□□□ 0.55
SDC3-203ENST00000471567 PLEKHM2Q8IWE5 1019 aa18.46■□□□□ 0.55
SDC3-203ENST00000471567 ZNF112Q9UJU3 913 aa18.46■□□□□ 0.55
SDC3-203ENST00000471567 FLT1P17948 1338 aa18.46■□□□□ 0.55
SDC3-203ENST00000471567 AK9Q5TCS8 1911 aa18.45■□□□□ 0.54
SDC3-203ENST00000471567 RNF113AO15541 343 aaKnown RBP18.45■□□□□ 0.54
SDC3-203ENST00000471567 TBC1D12O60347 775 aa18.45■□□□□ 0.54
SDC3-203ENST00000471567 AOC2O75106 756 aa18.45■□□□□ 0.54
SDC3-203ENST00000471567 USP5P45974 858 aa18.45■□□□□ 0.54
SDC3-203ENST00000471567 PPP1R3FQ6ZSY5 799 aaPredicted RBP18.45■□□□□ 0.54
SDC3-203ENST00000471567 MAPKAPK5Q8IW41 473 aa18.45■□□□□ 0.54
SDC3-203ENST00000471567 EVI5LQ96CN4 794 aa18.45■□□□□ 0.54
SDC3-203ENST00000471567 CRNKL1Q9BZJ0 848 aaKnown RBP18.45■□□□□ 0.54
SDC3-203ENST00000471567 MAP2K1Q02750 393 aaPredicted RBP18.44■□□□□ 0.54
SDC3-203ENST00000471567 TICAM2Q86XR7 235 aa18.44■□□□□ 0.54
SDC3-203ENST00000471567 REM2Q8IYK8 340 aaPredicted RBP18.44■□□□□ 0.54
SDC3-203ENST00000471567 CLMNQ96JQ2 1002 aa18.44■□□□□ 0.54
SDC3-203ENST00000471567 WRNIP1Q96S55 665 aa18.44■□□□□ 0.54
SDC3-203ENST00000471567 PI4KBQ9UBF8 816 aa18.44■□□□□ 0.54
SDC3-203ENST00000471567 CSADQ9Y600 493 aa18.44■□□□□ 0.54
SDC3-203ENST00000471567 THSD7BQ9C0I4 1608 aa18.44■□□□□ 0.54
SDC3-203ENST00000471567 MYH7P12883 1935 aa18.43■□□□□ 0.54
SDC3-203ENST00000471567 SLFNL1Q499Z3 407 aa18.43■□□□□ 0.54
SDC3-203ENST00000471567 LCORLQ8N3X6 602 aa18.43■□□□□ 0.54
SDC3-203ENST00000471567 APPBP2Q92624 585 aa18.43■□□□□ 0.54
SDC3-203ENST00000471567 FSD1Q9BTV5 496 aa18.43■□□□□ 0.54
SDC3-203ENST00000471567 FOCADQ5VW36 1801 aa18.42■□□□□ 0.54
SDC3-203ENST00000471567 MBD4O95243 580 aa18.42■□□□□ 0.54
SDC3-203ENST00000471567 ZBTB48P10074 688 aaPredicted RBP18.42■□□□□ 0.54
SDC3-203ENST00000471567 KIF23Q02241 960 aaPredicted RBP18.42■□□□□ 0.54
SDC3-203ENST00000471567 VGLL4Q14135 290 aa18.42■□□□□ 0.54
SDC3-203ENST00000471567 SPRYD7Q5W111 196 aa18.42■□□□□ 0.54
SDC3-203ENST00000471567 FOXP4Q8IVH2 680 aaPredicted RBP18.42■□□□□ 0.54
SDC3-203ENST00000471567 AIDAQ96BJ3 306 aa18.42■□□□□ 0.54
SDC3-203ENST00000471567 ARMT1Q9H993 441 aa18.42■□□□□ 0.54
SDC3-203ENST00000471567 HERC5Q9UII4 1024 aaKnown RBP18.42■□□□□ 0.54
SDC3-203ENST00000471567 CDK5RAP2Q96SN8 1893 aa18.41■□□□□ 0.54
SDC3-203ENST00000471567 PHF20L1A8MW92 1017 aa18.41■□□□□ 0.54
SDC3-203ENST00000471567 CHGBP05060 677 aa18.41■□□□□ 0.54
SDC3-203ENST00000471567 HLA-DOAP06340 250 aa18.41■□□□□ 0.54
SDC3-203ENST00000471567 METTL16Q86W50 562 aaKnown RBP18.41■□□□□ 0.54
SDC3-203ENST00000471567 WNK4Q96J92 1243 aa18.41■□□□□ 0.54
SDC3-203ENST00000471567 ZIC5Q96T25 663 aa18.41■□□□□ 0.54
SDC3-203ENST00000471567 PUS7LQ9H0K6 701 aaKnown RBP18.41■□□□□ 0.54
SDC3-203ENST00000471567 WBP1LQ9NX94 342 aa18.41■□□□□ 0.54
SDC3-203ENST00000471567 PALD1Q9ULE6 856 aa18.41■□□□□ 0.54
SDC3-203ENST00000471567 PDE4AP27815 886 aa18.4■□□□□ 0.54
SDC3-203ENST00000471567 INPP5BP32019 993 aa18.4■□□□□ 0.54
SDC3-203ENST00000471567 NOL9Q5SY16 702 aaKnown RBP18.4■□□□□ 0.54
SDC3-203ENST00000471567 CENPQQ7L2Z9 268 aaPredicted RBP18.4■□□□□ 0.54
SDC3-203ENST00000471567 TTC6Q86TZ1 520 aa18.4■□□□□ 0.54
SDC3-203ENST00000471567 ZKSCAN4Q969J2 545 aaPredicted RBP18.4■□□□□ 0.54
SDC3-203ENST00000471567 OSBP2Q969R2 916 aa18.4■□□□□ 0.54
SDC3-203ENST00000471567 ELP3Q9H9T3 547 aa18.4■□□□□ 0.54
SDC3-203ENST00000471567 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.4■□□□□ 0.54
SDC3-203ENST00000471567 ATP8A2Q9NTI2 1148 aa18.4■□□□□ 0.54
SDC3-203ENST00000471567 SNCAIPQ9Y6H5 919 aa18.4■□□□□ 0.54
SDC3-203ENST00000471567 OTOFQ9HC10 1997 aa18.39■□□□□ 0.53
SDC3-203ENST00000471567 ZMYM1Q5SVZ6 1142 aa18.39■□□□□ 0.53
SDC3-203ENST00000471567 ERO1BQ86YB8 467 aa18.39■□□□□ 0.53
SDC3-203ENST00000471567 STRBPQ96SI9 672 aaKnown RBP18.39■□□□□ 0.53
SDC3-203ENST00000471567 DCP1AQ9NPI6 582 aaPredicted RBP18.39■□□□□ 0.53
SDC3-203ENST00000471567 SAP30BPQ9UHR5 308 aaKnown RBP18.39■□□□□ 0.53
SDC3-203ENST00000471567 SPDYE5A6NIY4 337 aa18.38■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms