RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 GPBAR1Q8TDU6 330 aa10.05□□□□□ -0.8
CCDC39-202ENST00000471307 ACSBG1Q96GR2 724 aa10.05□□□□□ -0.8
CCDC39-202ENST00000471307 C1GALT1Q9NS00 363 aa10.05□□□□□ -0.8
CCDC39-202ENST00000471307 TTF2Q9UNY4 1162 aaKnown RBP10.05□□□□□ -0.8
CCDC39-202ENST00000471307 DUSP27Q5VZP5 1158 aa10.04□□□□□ -0.8
CCDC39-202ENST00000471307 TTLL4Q14679 1199 aa10.03□□□□□ -0.8
CCDC39-202ENST00000471307 PCNX4Q63HM2 1172 aa10.03□□□□□ -0.8
CCDC39-202ENST00000471307 RNF214Q8ND24 703 aa10.03□□□□□ -0.8
CCDC39-202ENST00000471307 CELA3AP09093 270 aa10.02□□□□□ -0.81
CCDC39-202ENST00000471307 DAB2P98082 770 aa10.02□□□□□ -0.81
CCDC39-202ENST00000471307 OGFOD3Q6PK18 319 aa10.02□□□□□ -0.81
CCDC39-202ENST00000471307 GRIN3AQ8TCU5 1115 aa10.02□□□□□ -0.81
CCDC39-202ENST00000471307 GZF1Q9H116 711 aaPredicted RBP10.02□□□□□ -0.81
CCDC39-202ENST00000471307 PCOLCE2Q9UKZ9 415 aa10.02□□□□□ -0.81
CCDC39-202ENST00000471307 FAM170BA6NMN3 283 aa10.01□□□□□ -0.81
CCDC39-202ENST00000471307 CYP26A1O43174 497 aa10.01□□□□□ -0.81
CCDC39-202ENST00000471307 DYNC1LI2O43237 492 aaPredicted RBP10.01□□□□□ -0.81
CCDC39-202ENST00000471307 ITGAEP38570 1179 aa10.01□□□□□ -0.81
CCDC39-202ENST00000471307 MSMPQ1L6U9 139 aa10.01□□□□□ -0.81
CCDC39-202ENST00000471307 FBXO33Q7Z6M2 555 aa10.01□□□□□ -0.81
CCDC39-202ENST00000471307 PARP2Q9UGN5 583 aa10.01□□□□□ -0.81
CCDC39-202ENST00000471307 TMC4Q7Z404 712 aa10□□□□□ -0.81
CCDC39-202ENST00000471307 SHISA5Q8N114 240 aa10□□□□□ -0.81
CCDC39-202ENST00000471307 RNGTTO60942 597 aaKnown RBP9.99□□□□□ -0.81
CCDC39-202ENST00000471307 HCLS1P14317 486 aaPredicted RBP9.99□□□□□ -0.81
CCDC39-202ENST00000471307 HOXA10P31260 410 aaPredicted RBP9.99□□□□□ -0.81
CCDC39-202ENST00000471307 RPS26P62854 115 aaKnown RBP9.99□□□□□ -0.81
CCDC39-202ENST00000471307 XPCQ01831 940 aaPredicted RBP9.99□□□□□ -0.81
CCDC39-202ENST00000471307 PSMD2Q13200 908 aa9.99□□□□□ -0.81
CCDC39-202ENST00000471307 CYP27C1Q4G0S4 372 aa9.99□□□□□ -0.81
CCDC39-202ENST00000471307 ZNF765Q7L2R6 523 aa9.99□□□□□ -0.81
CCDC39-202ENST00000471307 NEFMP07197 916 aa9.98□□□□□ -0.81
CCDC39-202ENST00000471307 RING1Q06587 406 aa9.98□□□□□ -0.81
CCDC39-202ENST00000471307 CCDC85BQ15834 202 aaPredicted RBP9.98□□□□□ -0.81
CCDC39-202ENST00000471307 MPRIPQ6WCQ1 1025 aa9.98□□□□□ -0.81
CCDC39-202ENST00000471307 PCDHA4Q9UN74 947 aa9.98□□□□□ -0.81
CCDC39-202ENST00000471307 FANCGO15287 622 aa9.97□□□□□ -0.81
CCDC39-202ENST00000471307 WNT11O96014 354 aa9.97□□□□□ -0.81
CCDC39-202ENST00000471307 PRNPP04156 253 aa9.97□□□□□ -0.81
CCDC39-202ENST00000471307 RLBP1P12271 317 aa9.97□□□□□ -0.81
CCDC39-202ENST00000471307 ST13P50502 369 aaKnown RBP9.97□□□□□ -0.81
CCDC39-202ENST00000471307 RASIP1Q5U651 963 aa9.97□□□□□ -0.81
CCDC39-202ENST00000471307 TTBK2Q6IQ55 1244 aa9.97□□□□□ -0.81
CCDC39-202ENST00000471307 ISL2Q96A47 359 aa9.97□□□□□ -0.81
CCDC39-202ENST00000471307 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.96□□□□□ -0.82
CCDC39-202ENST00000471307 KCT2Q8NC54 265 aa9.96□□□□□ -0.82
CCDC39-202ENST00000471307 LGR6Q9HBX8 967 aa9.96□□□□□ -0.82
CCDC39-202ENST00000471307 SSU72Q9NP77 194 aaKnown RBP9.96□□□□□ -0.82
CCDC39-202ENST00000471307 RNF19AQ9NV58 838 aa9.96□□□□□ -0.82
CCDC39-202ENST00000471307 BSDC1Q9NW68 430 aaPredicted RBP9.96□□□□□ -0.82
CCDC39-202ENST00000471307 TAF1CQ15572 869 aaPredicted RBP9.95□□□□□ -0.82
CCDC39-202ENST00000471307 PSMG3-AS1Q96PY0 264 aa9.95□□□□□ -0.82
CCDC39-202ENST00000471307 NOC4LQ9BVI4 516 aaKnown RBP9.95□□□□□ -0.82
CCDC39-202ENST00000471307 FAM87AP0C7U9 286 aa9.94□□□□□ -0.82
CCDC39-202ENST00000471307 GP2P55259 537 aaKnown RBP9.94□□□□□ -0.82
CCDC39-202ENST00000471307 CDK5R2Q13319 367 aa9.94□□□□□ -0.82
CCDC39-202ENST00000471307 PPM1JQ5JR12 505 aa9.94□□□□□ -0.82
CCDC39-202ENST00000471307 ZBTB37Q5TC79 503 aa9.94□□□□□ -0.82
CCDC39-202ENST00000471307 GAL3ST3Q96A11 431 aa9.94□□□□□ -0.82
CCDC39-202ENST00000471307 ELMO3Q96BJ8 720 aa9.94□□□□□ -0.82
CCDC39-202ENST00000471307 PICK1Q9NRD5 415 aa9.94□□□□□ -0.82
CCDC39-202ENST00000471307 DCDC2CA8MYV0 355 aa9.93□□□□□ -0.82
CCDC39-202ENST00000471307 LMNB1P20700 586 aa9.93□□□□□ -0.82
CCDC39-202ENST00000471307 NTF4P34130 210 aa9.93□□□□□ -0.82
CCDC39-202ENST00000471307 AGMOQ6ZNB7 445 aa9.93□□□□□ -0.82
CCDC39-202ENST00000471307 HDXQ7Z353 690 aa9.93□□□□□ -0.82
CCDC39-202ENST00000471307 VSIG10LQ86VR7 867 aa9.93□□□□□ -0.82
CCDC39-202ENST00000471307 CRELD1Q96HD1 420 aa9.93□□□□□ -0.82
CCDC39-202ENST00000471307 MKNK2Q9HBH9 465 aa9.93□□□□□ -0.82
CCDC39-202ENST00000471307 ANGEL1Q9UNK9 670 aaKnown RBP9.93□□□□□ -0.82
CCDC39-202ENST00000471307 SNCAIPQ9Y6H5 919 aa9.93□□□□□ -0.82
CCDC39-202ENST00000471307 USP31Q70CQ4 1352 aa9.92□□□□□ -0.82
CCDC39-202ENST00000471307 SORBS3O60504 671 aa9.92□□□□□ -0.82
CCDC39-202ENST00000471307 LIG3P49916 1009 aa9.92□□□□□ -0.82
CCDC39-202ENST00000471307 MEI1Q5TIA1 1274 aa9.92□□□□□ -0.82
CCDC39-202ENST00000471307 C12orf40Q86WS4 652 aa9.92□□□□□ -0.82
CCDC39-202ENST00000471307 DUSP23Q9BVJ7 150 aa9.92□□□□□ -0.82
CCDC39-202ENST00000471307 LRRC4CQ9HCJ2 640 aa9.92□□□□□ -0.82
CCDC39-202ENST00000471307 MRS2Q9HD23 443 aa9.92□□□□□ -0.82
CCDC39-202ENST00000471307 ZC3H7BQ9UGR2 993 aaKnown RBP9.92□□□□□ -0.82
CCDC39-202ENST00000471307 CSADQ9Y600 493 aa9.92□□□□□ -0.82
CCDC39-202ENST00000471307 CDC37L1Q7L3B6 337 aa9.91□□□□□ -0.82
CCDC39-202ENST00000471307 ZNF507Q8TCN5 953 aa9.91□□□□□ -0.82
CCDC39-202ENST00000471307 FBXL18Q96ME1 805 aa9.91□□□□□ -0.82
CCDC39-202ENST00000471307 CCDC39Q9UFE4 941 aa9.91□□□□□ -0.82
CCDC39-202ENST00000471307 ADAMTS4O75173 837 aa9.9□□□□□ -0.82
CCDC39-202ENST00000471307 CTSHP09668 335 aa9.9□□□□□ -0.82
CCDC39-202ENST00000471307 LRFN4Q6PJG9 635 aa9.9□□□□□ -0.82
CCDC39-202ENST00000471307 CYFIP1Q7L576 1253 aa9.9□□□□□ -0.82
CCDC39-202ENST00000471307 TACC3Q9Y6A5 838 aa9.9□□□□□ -0.82
CCDC39-202ENST00000471307 PTPN11Q06124 597 aaPredicted RBP9.89□□□□□ -0.83
CCDC39-202ENST00000471307 INPP5AQ14642 412 aa9.89□□□□□ -0.83
CCDC39-202ENST00000471307 MISP3Q96FF7 219 aa9.89□□□□□ -0.83
CCDC39-202ENST00000471307 PLPPR2Q96GM1 343 aa9.89□□□□□ -0.83
CCDC39-202ENST00000471307 MIR1-1HGQ9H1L0 117 aa9.89□□□□□ -0.83
CCDC39-202ENST00000471307 OAS3Q9Y6K5 1087 aaKnown RBP9.89□□□□□ -0.83
CCDC39-202ENST00000471307 ZBTB7CA1YPR0 619 aa9.88□□□□□ -0.83
CCDC39-202ENST00000471307 DIEXFQ68CQ4 756 aaKnown RBP9.88□□□□□ -0.83
CCDC39-202ENST00000471307 STK11IPQ8N1F8 1099 aa9.88□□□□□ -0.83
CCDC39-202ENST00000471307 FAM161BQ96MY7 647 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms