RNA–Protein interactions for RNA: ENST00000471167.1

PRPF40A-206, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 333 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-206ENST00000471167 MSMPQ1L6U9 139 aa9.16□□□□□ -0.94
PRPF40A-206ENST00000471167 DTX1Q86Y01 620 aa9.16□□□□□ -0.94
PRPF40A-206ENST00000471167 EMILIN2Q9BXX0 1053 aa9.16□□□□□ -0.94
PRPF40A-206ENST00000471167 PIM2Q9P1W9 311 aa9.16□□□□□ -0.94
PRPF40A-206ENST00000471167 U3KQE9 123 aa9.16□□□□□ -0.94
PRPF40A-206ENST00000471167 TRIM37O94972 964 aa9.15□□□□□ -0.94
PRPF40A-206ENST00000471167 MAP7Q14244 749 aa9.15□□□□□ -0.94
PRPF40A-206ENST00000471167 INPP5AQ14642 412 aa9.15□□□□□ -0.94
PRPF40A-206ENST00000471167 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.15□□□□□ -0.94
PRPF40A-206ENST00000471167 SV2BQ7L1I2 683 aa9.15□□□□□ -0.94
PRPF40A-206ENST00000471167 ZNF765Q7L2R6 523 aa9.15□□□□□ -0.94
PRPF40A-206ENST00000471167 GAL3ST3Q96A11 431 aa9.15□□□□□ -0.94
PRPF40A-206ENST00000471167 ISL2Q96A47 359 aa9.15□□□□□ -0.94
PRPF40A-206ENST00000471167 PCMTD2Q9NV79 361 aa9.15□□□□□ -0.94
PRPF40A-206ENST00000471167 CSADQ9Y600 493 aa9.15□□□□□ -0.94
PRPF40A-206ENST00000471167 RBAK-RBAKDNI3L0D1 243 aa9.14□□□□□ -0.95
PRPF40A-206ENST00000471167 ERVK-24P63145 666 aa9.14□□□□□ -0.95
PRPF40A-206ENST00000471167 CDK5R2Q13319 367 aa9.14□□□□□ -0.95
PRPF40A-206ENST00000471167 LLGL2Q6P1M3 1020 aa9.14□□□□□ -0.95
PRPF40A-206ENST00000471167 TMC4Q7Z404 712 aa9.14□□□□□ -0.95
PRPF40A-206ENST00000471167 SMYD4Q8IYR2 804 aaPredicted RBP9.14□□□□□ -0.95
PRPF40A-206ENST00000471167 YIPF2Q9BWQ6 316 aa9.14□□□□□ -0.95
PRPF40A-206ENST00000471167 ATXN3LQ9H3M9 355 aa9.14□□□□□ -0.95
PRPF40A-206ENST00000471167 FOSL1P15407 271 aa9.13□□□□□ -0.95
PRPF40A-206ENST00000471167 CCDC27Q2M243 656 aa9.13□□□□□ -0.95
PRPF40A-206ENST00000471167 PPM1JQ5JR12 505 aa9.13□□□□□ -0.95
PRPF40A-206ENST00000471167 C12orf40Q86WS4 652 aa9.13□□□□□ -0.95
PRPF40A-206ENST00000471167 TTF2Q9UNY4 1162 aaKnown RBP9.13□□□□□ -0.95
PRPF40A-206ENST00000471167 DCDC2CA8MYV0 355 aa9.12□□□□□ -0.95
PRPF40A-206ENST00000471167 LEFTY1O75610 366 aa9.12□□□□□ -0.95
PRPF40A-206ENST00000471167 OGFOD3Q6PK18 319 aa9.12□□□□□ -0.95
PRPF40A-206ENST00000471167 RNF214Q8ND24 703 aa9.12□□□□□ -0.95
PRPF40A-206ENST00000471167 OSBPL1AQ9BXW6 950 aa9.12□□□□□ -0.95
PRPF40A-206ENST00000471167 ATG3Q9NT62 314 aa9.12□□□□□ -0.95
PRPF40A-206ENST00000471167 CYP8B1Q9UNU6 501 aa9.12□□□□□ -0.95
PRPF40A-206ENST00000471167 PCDHB5Q9Y5E4 795 aa9.12□□□□□ -0.95
PRPF40A-206ENST00000471167 INTS5Q6P9B9 1019 aaKnown RBP9.11□□□□□ -0.95
PRPF40A-206ENST00000471167 LEMD3Q9Y2U8 911 aa9.11□□□□□ -0.95
PRPF40A-206ENST00000471167 RNGTTO60942 597 aaKnown RBP9.1□□□□□ -0.95
PRPF40A-206ENST00000471167 TTBK2Q6IQ55 1244 aa9.1□□□□□ -0.95
PRPF40A-206ENST00000471167 LRFN4Q6PJG9 635 aa9.1□□□□□ -0.95
PRPF40A-206ENST00000471167 PCDHA4Q9UN74 947 aa9.1□□□□□ -0.95
PRPF40A-206ENST00000471167 PSMD2Q13200 908 aa9.09□□□□□ -0.95
PRPF40A-206ENST00000471167 LRRC14Q15048 493 aa9.09□□□□□ -0.95
PRPF40A-206ENST00000471167 CCDC85BQ15834 202 aaPredicted RBP9.09□□□□□ -0.95
PRPF40A-206ENST00000471167 SCARA3Q6AZY7 606 aa9.09□□□□□ -0.95
PRPF40A-206ENST00000471167 CYFIP1Q7L576 1253 aa9.09□□□□□ -0.95
PRPF40A-206ENST00000471167 FAM214BQ7L5A3 538 aa9.09□□□□□ -0.95
PRPF40A-206ENST00000471167 WFDC3Q8IUB2 231 aa9.09□□□□□ -0.95
PRPF40A-206ENST00000471167 ACSBG1Q96GR2 724 aa9.09□□□□□ -0.95
PRPF40A-206ENST00000471167 PIDD1Q9HB75 910 aa9.09□□□□□ -0.95
PRPF40A-206ENST00000471167 ZC3H7BQ9UGR2 993 aaKnown RBP9.09□□□□□ -0.95
PRPF40A-206ENST00000471167 OAS3Q9Y6K5 1087 aaKnown RBP9.09□□□□□ -0.95
PRPF40A-206ENST00000471167 USP31Q70CQ4 1352 aa9.09□□□□□ -0.95
PRPF40A-206ENST00000471167 TFE3P19532 575 aaPredicted RBP9.08□□□□□ -0.96
PRPF40A-206ENST00000471167 ZBTB37Q5TC79 503 aa9.08□□□□□ -0.96
PRPF40A-206ENST00000471167 AGMOQ6ZNB7 445 aa9.08□□□□□ -0.96
PRPF40A-206ENST00000471167 PCOLCE2Q9UKZ9 415 aa9.08□□□□□ -0.96
PRPF40A-206ENST00000471167 SAMM50Q9Y512 469 aa9.08□□□□□ -0.96
PRPF40A-206ENST00000471167 CYP26A1O43174 497 aa9.07□□□□□ -0.96
PRPF40A-206ENST00000471167 FAM87AP0C7U9 286 aa9.07□□□□□ -0.96
PRPF40A-206ENST00000471167 GRIK1P39086 918 aa9.07□□□□□ -0.96
PRPF40A-206ENST00000471167 MAP3K11Q16584 847 aa9.07□□□□□ -0.96
PRPF40A-206ENST00000471167 CPSF6Q16630 551 aaKnown RBP eCLIP9.07□□□□□ -0.96
PRPF40A-206ENST00000471167 NBPF11Q86T75 865 aa9.07□□□□□ -0.96
PRPF40A-206ENST00000471167 PLPPR2Q96GM1 343 aa9.07□□□□□ -0.96
PRPF40A-206ENST00000471167 METTL22Q9BUU2 404 aaPredicted RBP9.07□□□□□ -0.96
PRPF40A-206ENST00000471167 DUSP23Q9BVJ7 150 aa9.07□□□□□ -0.96
PRPF40A-206ENST00000471167 TLR6Q9Y2C9 796 aa9.07□□□□□ -0.96
PRPF40A-206ENST00000471167 GFRA2O00451 464 aa9.06□□□□□ -0.96
PRPF40A-206ENST00000471167 LIG3P49916 1009 aa9.06□□□□□ -0.96
PRPF40A-206ENST00000471167 FGD1P98174 961 aa9.06□□□□□ -0.96
PRPF40A-206ENST00000471167 SEPT6Q14141 434 aa9.06□□□□□ -0.96
PRPF40A-206ENST00000471167 TAF1CQ15572 869 aaPredicted RBP9.06□□□□□ -0.96
PRPF40A-206ENST00000471167 FBRSQ9HAH7 460 aa9.06□□□□□ -0.96
PRPF40A-206ENST00000471167 F6X3S4 739 aa9.05□□□□□ -0.96
PRPF40A-206ENST00000471167 PRNPP04156 253 aa9.05□□□□□ -0.96
PRPF40A-206ENST00000471167 RPS26P62854 115 aaKnown RBP9.05□□□□□ -0.96
PRPF40A-206ENST00000471167 HEXIM2Q96MH2 286 aaKnown RBP9.05□□□□□ -0.96
PRPF40A-206ENST00000471167 LRRC4CQ9HCJ2 640 aa9.05□□□□□ -0.96
PRPF40A-206ENST00000471167 CCDC39Q9UFE4 941 aa9.05□□□□□ -0.96
PRPF40A-206ENST00000471167 FANCGO15287 622 aa9.04□□□□□ -0.96
PRPF40A-206ENST00000471167 ERCC3P19447 782 aa9.04□□□□□ -0.96
PRPF40A-206ENST00000471167 ST13P50502 369 aaKnown RBP9.04□□□□□ -0.96
PRPF40A-206ENST00000471167 XPCQ01831 940 aaPredicted RBP9.04□□□□□ -0.96
PRPF40A-206ENST00000471167 DUSP27Q5VZP5 1158 aa9.04□□□□□ -0.96
PRPF40A-206ENST00000471167 PHF6Q8IWS0 365 aaKnown RBP eCLIP9.04□□□□□ -0.96
PRPF40A-206ENST00000471167 PHC3Q8NDX5 983 aa9.04□□□□□ -0.96
PRPF40A-206ENST00000471167 GIMAP7Q8NHV1 300 aa9.04□□□□□ -0.96
PRPF40A-206ENST00000471167 CNTNAP4Q9C0A0 1308 aa9.04□□□□□ -0.96
PRPF40A-206ENST00000471167 GP2P55259 537 aaKnown RBP9.03□□□□□ -0.96
PRPF40A-206ENST00000471167 SLBPQ14493 270 aaKnown RBP eCLIP9.03□□□□□ -0.96
PRPF40A-206ENST00000471167 NKG7Q16617 165 aa9.03□□□□□ -0.96
PRPF40A-206ENST00000471167 LDLRAD1Q5T700 205 aa9.03□□□□□ -0.96
PRPF40A-206ENST00000471167 FAM181AQ8N9Y4 354 aa9.03□□□□□ -0.96
PRPF40A-206ENST00000471167 NOC4LQ9BVI4 516 aaKnown RBP9.03□□□□□ -0.96
PRPF40A-206ENST00000471167 KRTAP4-8Q9BYQ9 185 aa9.03□□□□□ -0.96
PRPF40A-206ENST00000471167 CYP27A1Q02318 531 aa9.02□□□□□ -0.97
PRPF40A-206ENST00000471167 WIPI1Q5MNZ9 446 aaPredicted RBP9.02□□□□□ -0.97
PRPF40A-206ENST00000471167 TOP6BLQ8N6T0 577 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms