RNA–Protein interactions for RNA: ENST00000469232.5

NPHP3-204, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 1,616 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-204ENST00000469232 PPP1R37O75864 691 aa9.78□□□□□ -0.84
NPHP3-204ENST00000469232 RPS12P25398 132 aaKnown RBP9.78□□□□□ -0.84
NPHP3-204ENST00000469232 RHBDL3P58872 404 aa9.78□□□□□ -0.84
NPHP3-204ENST00000469232 RASSF7Q02833 373 aa9.78□□□□□ -0.84
NPHP3-204ENST00000469232 CCDC129Q6ZRS4 1044 aa9.78□□□□□ -0.84
NPHP3-204ENST00000469232 DZIP1Q86YF9 867 aaKnown RBP9.78□□□□□ -0.84
NPHP3-204ENST00000469232 ZDHHC15Q96MV8 337 aa9.78□□□□□ -0.84
NPHP3-204ENST00000469232 ANO2Q9NQ90 1003 aa9.78□□□□□ -0.84
NPHP3-204ENST00000469232 DAGLAQ9Y4D2 1042 aa9.78□□□□□ -0.84
NPHP3-204ENST00000469232 SRCAPQ6ZRS2 3230 aa9.77□□□□□ -0.84
NPHP3-204ENST00000469232 DDX60LQ5H9U9 1706 aaKnown RBP9.77□□□□□ -0.85
NPHP3-204ENST00000469232 GSG1L2A8MUP6 293 aa9.77□□□□□ -0.85
NPHP3-204ENST00000469232 PATL2C9JE40 543 aaKnown RBP9.77□□□□□ -0.85
NPHP3-204ENST00000469232 MBD4O95243 580 aa9.77□□□□□ -0.85
NPHP3-204ENST00000469232 ZNF280AP59817 542 aaPredicted RBP9.77□□□□□ -0.85
NPHP3-204ENST00000469232 VPS53Q5VIR6 699 aa9.77□□□□□ -0.85
NPHP3-204ENST00000469232 CIAPIN1Q6FI81 312 aa9.77□□□□□ -0.85
NPHP3-204ENST00000469232 APOBEC3HQ6NTF7 200 aaKnown RBP9.77□□□□□ -0.85
NPHP3-204ENST00000469232 KIAA1211Q6ZU35 1233 aa9.77□□□□□ -0.85
NPHP3-204ENST00000469232 LCORLQ8N3X6 602 aa9.77□□□□□ -0.85
NPHP3-204ENST00000469232 JDP2Q8WYK2 163 aa9.77□□□□□ -0.85
NPHP3-204ENST00000469232 DPF2Q92785 391 aa9.77□□□□□ -0.85
NPHP3-204ENST00000469232 UPF2Q9HAU5 1272 aaKnown RBP9.77□□□□□ -0.85
NPHP3-204ENST00000469232 JAG2Q9Y219 1238 aa9.77□□□□□ -0.85
NPHP3-204ENST00000469232 RBM8AQ9Y5S9 174 aaKnown RBP9.77□□□□□ -0.85
NPHP3-204ENST00000469232 FOCADQ5VW36 1801 aa9.76□□□□□ -0.85
NPHP3-204ENST00000469232 MAGEB6P1A0A0J9YX57 407 aa9.76□□□□□ -0.85
NPHP3-204ENST00000469232 HOXB3P14651 431 aaPredicted RBP9.76□□□□□ -0.85
NPHP3-204ENST00000469232 TNIP1Q15025 636 aa9.76□□□□□ -0.85
NPHP3-204ENST00000469232 DIXDC1Q155Q3 683 aa9.76□□□□□ -0.85
NPHP3-204ENST00000469232 ARHGAP27Q6ZUM4 889 aa9.76□□□□□ -0.85
NPHP3-204ENST00000469232 AIDAQ96BJ3 306 aa9.76□□□□□ -0.85
NPHP3-204ENST00000469232 MXD3Q9BW11 206 aa9.76□□□□□ -0.85
NPHP3-204ENST00000469232 EPB41L4AQ9HCS5 686 aaPredicted RBP9.76□□□□□ -0.85
NPHP3-204ENST00000469232 ATP8A2Q9NTI2 1148 aa9.76□□□□□ -0.85
NPHP3-204ENST00000469232 TTF2Q9UNY4 1162 aaKnown RBP9.76□□□□□ -0.85
NPHP3-204ENST00000469232 LAMA4Q16363 1823 aa9.76□□□□□ -0.85
NPHP3-204ENST00000469232 TIAM2Q8IVF5 1701 aa9.75□□□□□ -0.85
NPHP3-204ENST00000469232 CDK5RAP2Q96SN8 1893 aa9.75□□□□□ -0.85
NPHP3-204ENST00000469232 SLC27A2O14975 620 aa9.75□□□□□ -0.85
NPHP3-204ENST00000469232 GRIN3BO60391 1043 aa9.75□□□□□ -0.85
NPHP3-204ENST00000469232 FGAP02671 866 aa9.75□□□□□ -0.85
NPHP3-204ENST00000469232 TM6SF1Q9BZW5 370 aa9.75□□□□□ -0.85
NPHP3-204ENST00000469232 ARMT1Q9H993 441 aa9.75□□□□□ -0.85
NPHP3-204ENST00000469232 ANAPC4Q9UJX5 808 aa9.75□□□□□ -0.85
NPHP3-204ENST00000469232 COL2A1P02458 1487 aaPredicted RBP9.75□□□□□ -0.85
NPHP3-204ENST00000469232 RAD17O75943 681 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 BAG3O95817 575 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 FGRP09769 529 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 CRKP46108 304 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 DYNLL1P63167 89 aaKnown RBP9.74□□□□□ -0.85
NPHP3-204ENST00000469232 SBK1Q52WX2 424 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 CREB3L3Q68CJ9 461 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 IFNL3Q8IZI9 196 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 MIGA1Q8NAN2 632 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 TEKT1Q969V4 418 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 CTNNA3Q9UI47 895 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 PALD1Q9ULE6 856 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 RBM19Q9Y4C8 960 aaKnown RBP9.74□□□□□ -0.85
NPHP3-204ENST00000469232 SNX14Q9Y5W7 946 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 ADAMTSL1Q8N6G6 1762 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 PRKAB2O43741 272 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 CYP21A2P08686 494 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 MCCP23508 829 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 BTDP43251 543 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 FKBP1CQ5VVH2 108 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 GPC2Q8N158 579 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 IDI2Q9BXS1 227 aa9.74□□□□□ -0.85
NPHP3-204ENST00000469232 CRNKL1Q9BZJ0 848 aaKnown RBP9.74□□□□□ -0.85
NPHP3-204ENST00000469232 DCP1AQ9NPI6 582 aaPredicted RBP9.74□□□□□ -0.85
NPHP3-204ENST00000469232 AATFQ9NY61 560 aaKnown RBP eCLIP9.74□□□□□ -0.85
NPHP3-204ENST00000469232 ZNF541Q9H0D2 1346 aa9.73□□□□□ -0.85
NPHP3-204ENST00000469232 ECM29Q5VYK3 1845 aa9.73□□□□□ -0.85
NPHP3-204ENST00000469232 WDHD1O75717 1129 aaPredicted RBP9.73□□□□□ -0.85
NPHP3-204ENST00000469232 USP17L8P0C7I0 530 aa9.73□□□□□ -0.85
NPHP3-204ENST00000469232 NT5C2P49902 561 aa9.73□□□□□ -0.85
NPHP3-204ENST00000469232 EIF6P56537 245 aaKnown RBP9.73□□□□□ -0.85
NPHP3-204ENST00000469232 KIAA0825Q8IV33 1275 aa9.73□□□□□ -0.85
NPHP3-204ENST00000469232 SH3RF3Q8TEJ3 882 aaPredicted RBP9.73□□□□□ -0.85
NPHP3-204ENST00000469232 NBPF3Q9H094 633 aa9.73□□□□□ -0.85
NPHP3-204ENST00000469232 SLC4A4Q9Y6R1 1079 aa9.73□□□□□ -0.85
NPHP3-204ENST00000469232 ROBO3Q96MS0 1386 aa9.73□□□□□ -0.85
NPHP3-204ENST00000469232 RNF20Q5VTR2 975 aa9.72□□□□□ -0.85
NPHP3-204ENST00000469232 CDC42EP5Q6NZY7 148 aa9.72□□□□□ -0.85
NPHP3-204ENST00000469232 FBXL16Q8N461 479 aa9.72□□□□□ -0.85
NPHP3-204ENST00000469232 NACAP1Q9BZK3 213 aa9.72□□□□□ -0.85
NPHP3-204ENST00000469232 ALDH8A1Q9H2A2 487 aaPredicted RBP9.72□□□□□ -0.85
NPHP3-204ENST00000469232 ZSWIM6Q9HCJ5 1215 aa9.72□□□□□ -0.85
NPHP3-204ENST00000469232 HDAC9Q9UKV0 1011 aa9.72□□□□□ -0.85
NPHP3-204ENST00000469232 TAF6LQ9Y6J9 622 aa9.72□□□□□ -0.85
NPHP3-204ENST00000469232 ATRNL1Q5VV63 1379 aa9.72□□□□□ -0.85
NPHP3-204ENST00000469232 PCP11498 1178 aaKnown RBP9.71□□□□□ -0.85
NPHP3-204ENST00000469232 GMPSP49915 693 aaPredicted RBP9.71□□□□□ -0.85
NPHP3-204ENST00000469232 SCNN1DP51172 638 aa9.71□□□□□ -0.85
NPHP3-204ENST00000469232 KRT32Q14532 448 aa9.71□□□□□ -0.85
NPHP3-204ENST00000469232 RABEP1Q15276 862 aa9.71□□□□□ -0.85
NPHP3-204ENST00000469232 C9orf131Q5VYM1 1079 aa9.71□□□□□ -0.85
NPHP3-204ENST00000469232 CTR9Q6PD62 1173 aa9.71□□□□□ -0.85
NPHP3-204ENST00000469232 METTL16Q86W50 562 aaKnown RBP9.71□□□□□ -0.85
NPHP3-204ENST00000469232 SNX21Q969T3 373 aa9.71□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms