RNA–Protein interactions for RNA: ENST00000464425.1

VPS52-215, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 5

Gene VPS52, Length 1,060 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-215ENST00000464425 OTUD7AQ8TE49 926 aaPredicted RBP20.68■□□□□ 0.9
VPS52-215ENST00000464425 GPATCH3Q96I76 525 aa20.68■□□□□ 0.9
VPS52-215ENST00000464425 BEGAINQ9BUH8 593 aa20.68■□□□□ 0.9
VPS52-215ENST00000464425 RFX7Q2KHR2 1363 aa20.68■□□□□ 0.9
VPS52-215ENST00000464425 RPAP1Q9BWH6 1393 aaPredicted RBP20.68■□□□□ 0.9
VPS52-215ENST00000464425 DDTLA6NHG4 134 aaPredicted RBP20.67■□□□□ 0.9
VPS52-215ENST00000464425 FOXN1O15353 648 aa20.67■□□□□ 0.9
VPS52-215ENST00000464425 MAP4K4O95819 1239 aaPredicted RBP20.67■□□□□ 0.9
VPS52-215ENST00000464425 SLC9C2Q5TAH2 1124 aa20.67■□□□□ 0.9
VPS52-215ENST00000464425 DCAF15Q66K64 600 aa20.67■□□□□ 0.9
VPS52-215ENST00000464425 PPP1R3FQ6ZSY5 799 aaPredicted RBP20.67■□□□□ 0.9
VPS52-215ENST00000464425 SMC5Q8IY18 1101 aa20.67■□□□□ 0.9
VPS52-215ENST00000464425 CSRNP1Q96S65 589 aa20.67■□□□□ 0.9
VPS52-215ENST00000464425 ELP3Q9H9T3 547 aa20.67■□□□□ 0.9
VPS52-215ENST00000464425 PDE6AP16499 860 aa20.66■□□□□ 0.9
VPS52-215ENST00000464425 PLCG2P16885 1265 aa20.66■□□□□ 0.9
VPS52-215ENST00000464425 DDX55Q8NHQ9 600 aaKnown RBP eCLIP20.66■□□□□ 0.9
VPS52-215ENST00000464425 TGFBRAP1Q8WUH2 860 aa20.66■□□□□ 0.9
VPS52-215ENST00000464425 WRNIP1Q96S55 665 aa20.66■□□□□ 0.9
VPS52-215ENST00000464425 ZNF341Q9BYN7 854 aa20.66■□□□□ 0.9
VPS52-215ENST00000464425 AK9Q5TCS8 1911 aa20.66■□□□□ 0.9
VPS52-215ENST00000464425 UNCXA6NJT0 531 aa20.65■□□□□ 0.9
VPS52-215ENST00000464425 VGLL4Q14135 290 aa20.65■□□□□ 0.9
VPS52-215ENST00000464425 SPRYD7Q5W111 196 aa20.65■□□□□ 0.9
VPS52-215ENST00000464425 B4GALNT3Q6L9W6 998 aa20.65■□□□□ 0.9
VPS52-215ENST00000464425 WNK4Q96J92 1243 aa20.65■□□□□ 0.9
VPS52-215ENST00000464425 CSADQ9Y600 493 aa20.65■□□□□ 0.9
VPS52-215ENST00000464425 THSD7BQ9C0I4 1608 aa20.64■□□□□ 0.9
VPS52-215ENST00000464425 ZNF532Q9HCE3 1301 aa20.64■□□□□ 0.89
VPS52-215ENST00000464425 NPM3O75607 178 aaKnown RBP20.64■□□□□ 0.89
VPS52-215ENST00000464425 SLURP2P0DP57 97 aa20.64■□□□□ 0.89
VPS52-215ENST00000464425 SLFNL1Q499Z3 407 aa20.64■□□□□ 0.89
VPS52-215ENST00000464425 MAPKAPK5Q8IW41 473 aa20.64■□□□□ 0.89
VPS52-215ENST00000464425 ZKSCAN4Q969J2 545 aaPredicted RBP20.64■□□□□ 0.89
VPS52-215ENST00000464425 OSBPL5Q9H0X9 879 aaPredicted RBP20.64■□□□□ 0.89
VPS52-215ENST00000464425 TSKSQ9UJT2 592 aa20.64■□□□□ 0.89
VPS52-215ENST00000464425 MAST2Q6P0Q8 1798 aa20.64■□□□□ 0.89
VPS52-215ENST00000464425 CNKSR2Q8WXI2 1034 aa20.63■□□□□ 0.89
VPS52-215ENST00000464425 MAGEB6P1A0A0J9YX57 407 aa20.62■□□□□ 0.89
VPS52-215ENST00000464425 TCRBV5S4A2TA0A5A2 114 aa20.62■□□□□ 0.89
VPS52-215ENST00000464425 INPP5BP32019 993 aa20.62■□□□□ 0.89
VPS52-215ENST00000464425 GJA5P36382 358 aa20.62■□□□□ 0.89
VPS52-215ENST00000464425 CTCFP49711 727 aaPredicted RBP20.62■□□□□ 0.89
VPS52-215ENST00000464425 TMED8Q6PL24 325 aaPredicted RBP20.62■□□□□ 0.89
VPS52-215ENST00000464425 OPTNQ96CV9 577 aa20.62■□□□□ 0.89
VPS52-215ENST00000464425 DDX24Q9GZR7 859 aaKnown RBP eCLIP20.62■□□□□ 0.893e-7■■■■■ 32.5
VPS52-215ENST00000464425 TTC41PQ6P2S7 1318 aa20.61■□□□□ 0.89
VPS52-215ENST00000464425 CHGBP05060 677 aa20.61■□□□□ 0.89
VPS52-215ENST00000464425 MX1P20591 662 aa20.61■□□□□ 0.89
VPS52-215ENST00000464425 ADD2P35612 726 aa20.61■□□□□ 0.89
VPS52-215ENST00000464425 LNPKQ9C0E8 428 aa20.61■□□□□ 0.89
VPS52-215ENST00000464425 ATRNL1Q5VV63 1379 aa20.6■□□□□ 0.89
VPS52-215ENST00000464425 DOCK2Q92608 1830 aa20.6■□□□□ 0.89
VPS52-215ENST00000464425 FLT1P17948 1338 aa20.6■□□□□ 0.89
VPS52-215ENST00000464425 ERC2O15083 957 aa20.6■□□□□ 0.89
VPS52-215ENST00000464425 ZBTB48P10074 688 aaPredicted RBP20.6■□□□□ 0.89
VPS52-215ENST00000464425 HSPA8P11142 646 aaKnown RBP20.6■□□□□ 0.89
VPS52-215ENST00000464425 USP5P45974 858 aa20.6■□□□□ 0.89
VPS52-215ENST00000464425 LBX1P52954 281 aa20.6■□□□□ 0.89
VPS52-215ENST00000464425 REM2Q8IYK8 340 aaPredicted RBP20.6■□□□□ 0.89
VPS52-215ENST00000464425 PI4K2BQ8TCG2 481 aa20.6■□□□□ 0.89
VPS52-215ENST00000464425 RIOK1Q9BRS2 568 aaKnown RBP20.6■□□□□ 0.89
VPS52-215ENST00000464425 RNF186Q9NXI6 227 aa20.6■□□□□ 0.89
VPS52-215ENST00000464425 PPP4R2Q9NY27 417 aa20.6■□□□□ 0.89
VPS52-215ENST00000464425 SAP30BPQ9UHR5 308 aaKnown RBP20.6■□□□□ 0.89
VPS52-215ENST00000464425 ZNF112Q9UJU3 913 aa20.6■□□□□ 0.89
VPS52-215ENST00000464425 SNCAIPQ9Y6H5 919 aa20.6■□□□□ 0.89
VPS52-215ENST00000464425 FAM196BA6NMK8 535 aa20.59■□□□□ 0.89
VPS52-215ENST00000464425 TRPA1O75762 1119 aa20.59■□□□□ 0.89
VPS52-215ENST00000464425 GLRX3O76003 335 aaKnown RBP20.59■□□□□ 0.89
VPS52-215ENST00000464425 NUCB1Q02818 461 aa20.59■□□□□ 0.89
VPS52-215ENST00000464425 SLC4A8Q2Y0W8 1093 aa20.59■□□□□ 0.89
VPS52-215ENST00000464425 CERS3Q8IU89 383 aa20.59■□□□□ 0.89
VPS52-215ENST00000464425 OTUD5Q96G74 571 aa20.59■□□□□ 0.89
VPS52-215ENST00000464425 PALD1Q9ULE6 856 aa20.59■□□□□ 0.89
VPS52-215ENST00000464425 OTOFQ9HC10 1997 aa20.58■□□□□ 0.89
VPS52-215ENST00000464425 PHF20L1A8MW92 1017 aa20.58■□□□□ 0.89
VPS52-215ENST00000464425 CA12O43570 354 aa20.58■□□□□ 0.89
VPS52-215ENST00000464425 TM4SF4P48230 202 aa20.58■□□□□ 0.89
VPS52-215ENST00000464425 MAP3K10Q02779 954 aa20.58■□□□□ 0.89
VPS52-215ENST00000464425 CCDC136Q96JN2 1154 aa20.58■□□□□ 0.89
VPS52-215ENST00000464425 DHX36Q9H2U1 1008 aaKnown RBP20.58■□□□□ 0.89
VPS52-215ENST00000464425 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.58■□□□□ 0.89
VPS52-215ENST00000464425 SALL3Q9BXA9 1300 aa20.57■□□□□ 0.88
VPS52-215ENST00000464425 MANSC4A6NHS7 340 aaPredicted RBP20.57■□□□□ 0.88
VPS52-215ENST00000464425 SREBF2Q12772 1141 aa20.57■□□□□ 0.88
VPS52-215ENST00000464425 ZSCAN25Q6NSZ9 544 aa20.57■□□□□ 0.88
VPS52-215ENST00000464425 CENPQQ7L2Z9 268 aaPredicted RBP20.57■□□□□ 0.88
VPS52-215ENST00000464425 ERO1BQ86YB8 467 aa20.57■□□□□ 0.88
VPS52-215ENST00000464425 LCORLQ8N3X6 602 aa20.57■□□□□ 0.88
VPS52-215ENST00000464425 KBTBD3Q8NAB2 608 aa20.57■□□□□ 0.88
VPS52-215ENST00000464425 ARMT1Q9H993 441 aa20.57■□□□□ 0.88
VPS52-215ENST00000464425 PI4KBQ9UBF8 816 aa20.57■□□□□ 0.88
VPS52-215ENST00000464425 SPDYE5A6NIY4 337 aa20.56■□□□□ 0.88
VPS52-215ENST00000464425 TBC1D12O60347 775 aa20.56■□□□□ 0.88
VPS52-215ENST00000464425 MBD4O95243 580 aa20.56■□□□□ 0.88
VPS52-215ENST00000464425 PDE1AP54750 535 aa20.56■□□□□ 0.88
VPS52-215ENST00000464425 UBE3CQ15386 1083 aa20.56■□□□□ 0.88
VPS52-215ENST00000464425 CHD1LQ86WJ1 897 aa20.56■□□□□ 0.88
VPS52-215ENST00000464425 CRNKL1Q9BZJ0 848 aaKnown RBP20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms