RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 HDAC9Q9UKV0 1011 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 EFCAB8A8MWE9 144 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 INPP5BP32019 993 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 PPFIA1Q13136 1202 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 CNNM4Q6P4Q7 775 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 DISP1Q96F81 1524 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 SV2BQ7L1I2 683 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 SECISBP2LQ93073 1101 aaKnown RBP21.32■■□□□ 1
CCDC88B-204ENST00000463837 OSBPL3Q9H4L5 887 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 ATP5DP30049 168 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 WHAMMP3Q1A5X7 153 aa21.32■■□□□ 1
CCDC88B-204ENST00000463837 POLR2DO15514 142 aaKnown RBP21.31■■□□□ 1
CCDC88B-204ENST00000463837 ZNF274Q96GC6 653 aaPredicted RBP21.31■■□□□ 1
CCDC88B-204ENST00000463837 IQCGQ9H095 443 aaKnown RBP21.31■■□□□ 1
CCDC88B-204ENST00000463837 MTUS1Q9ULD2 1270 aa21.31■■□□□ 1
CCDC88B-204ENST00000463837 MAGI2Q86UL8 1455 aa21.31■■□□□ 1
CCDC88B-204ENST00000463837 ATP6V1AP38606 617 aa21.31■■□□□ 1
CCDC88B-204ENST00000463837 LRRC8AQ8IWT6 810 aa21.31■■□□□ 1
CCDC88B-204ENST00000463837 DBNDD2Q9BQY9 259 aa21.31■■□□□ 1
CCDC88B-204ENST00000463837 NCOA5Q9HCD5 579 aaKnown RBP21.31■■□□□ 1
CCDC88B-204ENST00000463837 PSDA5PKW4 1024 aaPredicted RBP21.31■■□□□ 1
CCDC88B-204ENST00000463837 RPL13P26373 211 aaKnown RBP21.31■■□□□ 1
CCDC88B-204ENST00000463837 NFATC2IPQ8NCF5 419 aa21.31■■□□□ 1
CCDC88B-204ENST00000463837 LRRC45Q96CN5 670 aa21.31■■□□□ 1
CCDC88B-204ENST00000463837 VPS16Q9H269 839 aa21.31■■□□□ 1
CCDC88B-204ENST00000463837 C19orf44Q9H6X5 657 aa21.31■■□□□ 1
CCDC88B-204ENST00000463837 UTP14CQ5TAP6 766 aaKnown RBP21.31■■□□□ 1
CCDC88B-204ENST00000463837 DIS3L2Q8IYB7 885 aaKnown RBP21.31■■□□□ 1
CCDC88B-204ENST00000463837 GOLGA6BA6NDN3 693 aa21.3■■□□□ 1
CCDC88B-204ENST00000463837 ATP5JP18859 108 aa21.3■■□□□ 1
CCDC88B-204ENST00000463837 SPATA24Q86W54 205 aa21.3■■□□□ 1
CCDC88B-204ENST00000463837 SETDB1Q15047 1291 aa21.3■■□□□ 1
CCDC88B-204ENST00000463837 STAP2Q9UGK3 403 aa21.3■■□□□ 1
CCDC88B-204ENST00000463837 SERPINA10Q9UK55 444 aa21.3■■□□□ 1
CCDC88B-204ENST00000463837 ZNF174Q15697 407 aa21.3■■□□□ 1
CCDC88B-204ENST00000463837 PPP1R14CQ8TAE6 165 aa21.3■■□□□ 1
CCDC88B-204ENST00000463837 SREK1Q8WXA9 508 aaKnown RBP21.3■■□□□ 1
CCDC88B-204ENST00000463837 IFT74Q96LB3 600 aa21.3■■□□□ 1
CCDC88B-204ENST00000463837 NOX5Q96PH1 765 aa21.3■■□□□ 1
CCDC88B-204ENST00000463837 PLIN2Q99541 437 aa21.3■■□□□ 1
CCDC88B-204ENST00000463837 ATP8B1O43520 1251 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 RUFY4Q6ZNE9 571 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 A0A1B0GUA9 196 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 CEP128Q6ZU80 1094 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 WWC3Q9ULE0 1092 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 JAK2O60674 1132 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 LACTBP83111 547 aaPredicted RBP21.29■■□□□ 1
CCDC88B-204ENST00000463837 MTX1Q13505 466 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 KRT40Q6A162 431 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 HS2ST1Q7LGA3 356 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 FCHSD1Q86WN1 690 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 CCDC65Q8IXS2 484 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 TDRD7Q8NHU6 1098 aaKnown RBP21.29■■□□□ 1
CCDC88B-204ENST00000463837 EIF4G3O43432 1585 aaKnown RBP21.29■■□□□ 1
CCDC88B-204ENST00000463837 PLCG2P16885 1265 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 ETF1P62495 437 aaKnown RBP21.29■■□□□ 1
CCDC88B-204ENST00000463837 CALCOCO2Q13137 446 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 GRIPAP1Q4V328 841 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 OGFOD1Q8N543 542 aa21.29■■□□□ 1
CCDC88B-204ENST00000463837 B4E1Z4 1266 aa21.28■■□□□ 1
CCDC88B-204ENST00000463837 RBM6P78332 1123 aaKnown RBP21.28■■□□□ 1
CCDC88B-204ENST00000463837 NYXQ9GZU5 481 aa21.28■■□□□ 1
CCDC88B-204ENST00000463837 MBD4O95243 580 aa21.28■■□□□ 1
CCDC88B-204ENST00000463837 ATP7AQ04656 1500 aa21.28■■□□□ 1
CCDC88B-204ENST00000463837 IRS4O14654 1257 aaPredicted RBP21.28■■□□□ 1
CCDC88B-204ENST00000463837 PKP1Q13835 747 aa21.28■■□□□ 1
CCDC88B-204ENST00000463837 UBLCP1Q8WVY7 318 aaPredicted RBP21.28■■□□□ 1
CCDC88B-204ENST00000463837 OTUD7BQ6GQQ9 843 aa21.28■■□□□ 1
CCDC88B-204ENST00000463837 PFKFB2O60825 505 aa21.27■■□□□ 1
CCDC88B-204ENST00000463837 MYSM1Q5VVJ2 828 aa21.27■■□□□ 1
CCDC88B-204ENST00000463837 RGS22Q8NE09 1264 aa21.27■■□□□ 1
CCDC88B-204ENST00000463837 LRRC59Q96AG4 307 aaKnown RBP21.27■■□□□ 1
CCDC88B-204ENST00000463837 SAMM50Q9Y512 469 aa21.27■■□□□ 1
CCDC88B-204ENST00000463837 GIGYF1O75420 1035 aaPredicted RBP21.27■■□□□ 1
CCDC88B-204ENST00000463837 IL2RBP14784 551 aa21.27■■□□□ 1
CCDC88B-204ENST00000463837 KRT9P35527 623 aa21.27■■□□□ 1
CCDC88B-204ENST00000463837 DMTNQ08495 405 aa21.27■■□□□ 1
CCDC88B-204ENST00000463837 PAK2Q13177 524 aa21.27■■□□□ 1
CCDC88B-204ENST00000463837 CUL4AQ13619 759 aa21.27■■□□□ 1
CCDC88B-204ENST00000463837 KIAA1524Q8TCG1 905 aa21.27■■□□□ 1
CCDC88B-204ENST00000463837 PALD1Q9ULE6 856 aa21.27■■□□□ 1
CCDC88B-204ENST00000463837 MXRA7P84157 204 aa21.27■■□□□ 1
CCDC88B-204ENST00000463837 ZNF215Q9UL58 517 aaPredicted RBP21.27■■□□□ 1
CCDC88B-204ENST00000463837 TMEM110-MUSTN1A8MSY1 372 aa21.27■□□□□ 0.99
CCDC88B-204ENST00000463837 NR1I2O75469 434 aa21.27■□□□□ 0.99
CCDC88B-204ENST00000463837 CLUL1Q15846 466 aa21.27■□□□□ 0.99
CCDC88B-204ENST00000463837 ZSCAN26Q16670 478 aa21.27■□□□□ 0.99
CCDC88B-204ENST00000463837 CSGALNACT2Q8N6G5 542 aa21.27■□□□□ 0.99
CCDC88B-204ENST00000463837 SUCLG2Q96I99 432 aa21.27■□□□□ 0.99
CCDC88B-204ENST00000463837 PDE4DQ08499 809 aa21.26■□□□□ 0.99
CCDC88B-204ENST00000463837 TRIML1Q8N9V2 468 aa21.26■□□□□ 0.99
CCDC88B-204ENST00000463837 TSNARE1Q96NA8 513 aa21.26■□□□□ 0.99
CCDC88B-204ENST00000463837 RABEP2Q9H5N1 569 aa21.26■□□□□ 0.99
CCDC88B-204ENST00000463837 GPAA1O43292 621 aa21.26■□□□□ 0.99
CCDC88B-204ENST00000463837 TTC38Q5R3I4 469 aa21.26■□□□□ 0.99
CCDC88B-204ENST00000463837 HPDP32754 393 aaPredicted RBP21.26■□□□□ 0.99
CCDC88B-204ENST00000463837 MAP3K9P80192 1104 aa21.26■□□□□ 0.99
CCDC88B-204ENST00000463837 TRIM7Q9C029 511 aa21.26■□□□□ 0.99
CCDC88B-204ENST00000463837 ACTN4O43707 911 aaKnown RBP21.25■□□□□ 0.99
CCDC88B-204ENST00000463837 SEL1L2Q5TEA6 688 aa21.25■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms