RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 TOMM22Q9NS69 142 aa14.33□□□□□ -0.12
HDAC4-208ENST00000463007 FOXN1O15353 648 aa14.33□□□□□ -0.12
HDAC4-208ENST00000463007 PNMA6AP0CW24 399 aaPredicted RBP14.33□□□□□ -0.12
HDAC4-208ENST00000463007 ITGA6P23229 1130 aa14.33□□□□□ -0.12
HDAC4-208ENST00000463007 IRX2Q9BZI1 471 aaPredicted RBP14.33□□□□□ -0.12
HDAC4-208ENST00000463007 FANCLQ9NW38 375 aa14.33□□□□□ -0.12
HDAC4-208ENST00000463007 CCDC66A2RUB6 948 aa14.32□□□□□ -0.12
HDAC4-208ENST00000463007 WDHD1O75717 1129 aaPredicted RBP14.32□□□□□ -0.12
HDAC4-208ENST00000463007 ZFYP08048 801 aaPredicted RBP14.32□□□□□ -0.12
HDAC4-208ENST00000463007 MCAMP43121 646 aa14.32□□□□□ -0.12
HDAC4-208ENST00000463007 SYKP43405 635 aa14.32□□□□□ -0.12
HDAC4-208ENST00000463007 SYCP1Q15431 976 aa14.32□□□□□ -0.12
HDAC4-208ENST00000463007 SPATA31A1Q5TZJ5 1347 aa14.32□□□□□ -0.12
HDAC4-208ENST00000463007 COBLO75128 1261 aa14.32□□□□□ -0.12
HDAC4-208ENST00000463007 TOP1P11387 765 aaKnown RBP14.32□□□□□ -0.12
HDAC4-208ENST00000463007 FGFR2P21802 821 aa14.32□□□□□ -0.12
HDAC4-208ENST00000463007 ZAP70P43403 619 aa14.32□□□□□ -0.12
HDAC4-208ENST00000463007 EIF5P55010 431 aaKnown RBP14.32□□□□□ -0.12
HDAC4-208ENST00000463007 MYSM1Q5VVJ2 828 aa14.32□□□□□ -0.12
HDAC4-208ENST00000463007 INTS5Q6P9B9 1019 aaKnown RBP14.32□□□□□ -0.12
HDAC4-208ENST00000463007 TIGD1Q96MW7 591 aa14.32□□□□□ -0.12
HDAC4-208ENST00000463007 NBPF3Q9H094 633 aa14.32□□□□□ -0.12
HDAC4-208ENST00000463007 ST5P78524 1137 aa14.31□□□□□ -0.12
HDAC4-208ENST00000463007 CCDC158Q5M9N0 1113 aa14.31□□□□□ -0.12
HDAC4-208ENST00000463007 KLHL10Q6JEL2 608 aa14.31□□□□□ -0.12
HDAC4-208ENST00000463007 CMTR1Q8N1G2 835 aaKnown RBP14.31□□□□□ -0.12
HDAC4-208ENST00000463007 CHD4Q14839 1912 aa14.31□□□□□ -0.12
HDAC4-208ENST00000463007 ARID4AP29374 1257 aaPredicted RBP14.31□□□□□ -0.12
HDAC4-208ENST00000463007 HNRNPH2P55795 449 aaKnown RBP14.31□□□□□ -0.12
HDAC4-208ENST00000463007 ETF1P62495 437 aaKnown RBP14.31□□□□□ -0.12
HDAC4-208ENST00000463007 IRX5P78411 483 aaPredicted RBP14.31□□□□□ -0.12
HDAC4-208ENST00000463007 NFXL1Q6ZNB6 911 aa14.31□□□□□ -0.12
HDAC4-208ENST00000463007 GRAMD1CQ8IYS0 662 aa14.31□□□□□ -0.12
HDAC4-208ENST00000463007 APPBP2Q92624 585 aa14.31□□□□□ -0.12
HDAC4-208ENST00000463007 ZNF274Q96GC6 653 aaPredicted RBP14.31□□□□□ -0.12
HDAC4-208ENST00000463007 PUS7LQ9H0K6 701 aaKnown RBP14.31□□□□□ -0.12
HDAC4-208ENST00000463007 FHOD1Q9Y613 1164 aa14.31□□□□□ -0.12
HDAC4-208ENST00000463007 MROH7-TTC4A0A0A0MT08 1334 aa14.31□□□□□ -0.12
HDAC4-208ENST00000463007 TAF7LQ5H9L4 462 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 ANO1Q5XXA6 986 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 AK7Q96M32 723 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 LZTFL1Q9NQ48 299 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 IRS4O14654 1257 aaPredicted RBP14.3□□□□□ -0.12
HDAC4-208ENST00000463007 FANCGO15287 622 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 FGAP02671 866 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 GPTP24298 496 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 GTF2E1P29083 439 aaPredicted RBP14.3□□□□□ -0.12
HDAC4-208ENST00000463007 TTC39AQ5SRH9 613 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 MB21D2Q8IYB1 491 aaPredicted RBP14.3□□□□□ -0.12
HDAC4-208ENST00000463007 CCDC150Q8NCX0 1101 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 CHMP4CQ96CF2 233 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 WDR24Q96S15 920 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 SCN7AQ01118 1682 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 TCRBV5S4A2TA0A5A2 114 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 EXOC5O00471 708 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 PDE8AO60658 829 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 TFRCP02786 760 aaKnown RBP14.3□□□□□ -0.12
HDAC4-208ENST00000463007 PLA2G4AP47712 749 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 FBXO18Q8NFZ0 1043 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 SENP2Q9HC62 589 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 PUF60Q9UHX1 559 aaKnown RBP14.3□□□□□ -0.12
HDAC4-208ENST00000463007 RTL9Q8NET4 1388 aa14.3□□□□□ -0.12
HDAC4-208ENST00000463007 WDR19Q8NEZ3 1342 aa14.29□□□□□ -0.12
HDAC4-208ENST00000463007 RRP12Q5JTH9 1297 aaKnown RBP14.29□□□□□ -0.12
HDAC4-208ENST00000463007 NKX2-3Q8TAU0 364 aa14.29□□□□□ -0.12
HDAC4-208ENST00000463007 TMEM51Q9NW97 253 aa14.29□□□□□ -0.12
HDAC4-208ENST00000463007 ARGLU1Q9NWB6 273 aaPredicted RBP14.29□□□□□ -0.12
HDAC4-208ENST00000463007 RNF216Q9NWF9 866 aaPredicted RBP14.29□□□□□ -0.12
HDAC4-208ENST00000463007 RTEL1Q9NZ71 1219 aa14.29□□□□□ -0.12
HDAC4-208ENST00000463007 THRAP3Q9Y2W1 955 aaKnown RBP14.29□□□□□ -0.12
HDAC4-208ENST00000463007 PDE8BO95263 885 aa14.29□□□□□ -0.12
HDAC4-208ENST00000463007 ADD2P35612 726 aa14.29□□□□□ -0.12
HDAC4-208ENST00000463007 ANTXR2P58335 489 aa14.29□□□□□ -0.12
HDAC4-208ENST00000463007 NLRP12P59046 1061 aa14.29□□□□□ -0.12
HDAC4-208ENST00000463007 IMMTQ16891 758 aaKnown RBP14.29□□□□□ -0.12
HDAC4-208ENST00000463007 KCNG4Q8TDN1 519 aa14.29□□□□□ -0.12
HDAC4-208ENST00000463007 ALG1Q9BT22 464 aa14.29□□□□□ -0.12
HDAC4-208ENST00000463007 NCAPHQ15003 741 aa14.28□□□□□ -0.12
HDAC4-208ENST00000463007 DZIP3Q86Y13 1208 aaKnown RBP14.28□□□□□ -0.12
HDAC4-208ENST00000463007 CNNM3Q8NE01 707 aa14.28□□□□□ -0.12
HDAC4-208ENST00000463007 CDCA7Q9BWT1 371 aaPredicted RBP14.28□□□□□ -0.12
HDAC4-208ENST00000463007 OSBPL5Q9H0X9 879 aaPredicted RBP14.28□□□□□ -0.12
HDAC4-208ENST00000463007 STX17P56962 302 aa14.28□□□□□ -0.12
HDAC4-208ENST00000463007 MCM6Q14566 821 aa14.28□□□□□ -0.12
HDAC4-208ENST00000463007 MTF1Q14872 753 aa14.28□□□□□ -0.12
HDAC4-208ENST00000463007 OLFM4Q6UX06 510 aa14.28□□□□□ -0.12
HDAC4-208ENST00000463007 LDHAL6AQ6ZMR3 332 aa14.28□□□□□ -0.12
HDAC4-208ENST00000463007 HPS5Q9UPZ3 1129 aa14.28□□□□□ -0.12
HDAC4-208ENST00000463007 ANKRD18BA2A2Z9 1011 aa14.28□□□□□ -0.12
HDAC4-208ENST00000463007 PHACTR2O75167 634 aa14.28□□□□□ -0.12
HDAC4-208ENST00000463007 IDH1O75874 414 aaKnown RBP14.28□□□□□ -0.12
HDAC4-208ENST00000463007 PIH1D3Q9NQM4 214 aaKnown RBP14.28□□□□□ -0.12
HDAC4-208ENST00000463007 KIF2AO00139 706 aaPredicted RBP14.27□□□□□ -0.12
HDAC4-208ENST00000463007 ZNF213O14771 459 aa14.27□□□□□ -0.12
HDAC4-208ENST00000463007 CDC27P30260 824 aa14.27□□□□□ -0.12
HDAC4-208ENST00000463007 LONRF3Q496Y0 759 aa14.27□□□□□ -0.12
HDAC4-208ENST00000463007 METTL24Q5JXM2 366 aa14.27□□□□□ -0.12
HDAC4-208ENST00000463007 VPS37DQ86XT2 251 aa14.27□□□□□ -0.12
HDAC4-208ENST00000463007 ZKSCAN3Q9BRR0 538 aa14.27□□□□□ -0.12
HDAC4-208ENST00000463007 A0A0U1RQJ8 604 aa14.27□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms