RNA–Protein interactions for RNA: ENST00000459979.2

HOXD3-204, Transcript of homeobox D3, humanhuman

TSL 1 (best)

Gene HOXD3, Length 1,055 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-204ENST00000459979 RPAP1Q9BWH6 1393 aaPredicted RBP22.67■■□□□ 1.22
HOXD3-204ENST00000459979 TAF1CQ15572 869 aaPredicted RBP22.67■■□□□ 1.22
HOXD3-204ENST00000459979 FAM43AQ8N2R8 423 aa22.67■■□□□ 1.22
HOXD3-204ENST00000459979 GTF2A2P52657 109 aa22.66■■□□□ 1.22
HOXD3-204ENST00000459979 MECOMQ03112 1051 aa22.66■■□□□ 1.22
HOXD3-204ENST00000459979 ZNF384Q8TF68 577 aa22.66■■□□□ 1.22
HOXD3-204ENST00000459979 NSUN4Q96CB9 384 aaKnown RBP22.66■■□□□ 1.22
HOXD3-204ENST00000459979 TLR7Q9NYK1 1049 aaKnown RBP22.66■■□□□ 1.22
HOXD3-204ENST00000459979 SNCAIPQ9Y6H5 919 aa22.66■■□□□ 1.22
HOXD3-204ENST00000459979 TBC1D9Q6ZT07 1266 aa22.65■■□□□ 1.22
HOXD3-204ENST00000459979 AACSQ86V21 672 aa22.65■■□□□ 1.22
HOXD3-204ENST00000459979 CLASRPQ8N2M8 674 aaKnown RBP22.65■■□□□ 1.22
HOXD3-204ENST00000459979 FAM151AQ8WW52 585 aa22.65■■□□□ 1.22
HOXD3-204ENST00000459979 USP40Q9NVE5 1235 aa22.65■■□□□ 1.22
HOXD3-204ENST00000459979 MROH7-TTC4A0A0A0MT08 1334 aa22.64■■□□□ 1.22
HOXD3-204ENST00000459979 CENPFP49454 3210 aa22.64■■□□□ 1.22
HOXD3-204ENST00000459979 GPR75-ASB3A0A0A6YYF3 556 aa22.64■■□□□ 1.21
HOXD3-204ENST00000459979 LDHCP07864 332 aa22.64■■□□□ 1.21
HOXD3-204ENST00000459979 GSTO1P78417 241 aa22.64■■□□□ 1.21
HOXD3-204ENST00000459979 ZKSCAN4Q969J2 545 aaPredicted RBP22.64■■□□□ 1.21
HOXD3-204ENST00000459979 HOOK2Q96ED9 719 aa22.64■■□□□ 1.21
HOXD3-204ENST00000459979 WRNIP1Q96S55 665 aa22.64■■□□□ 1.21
HOXD3-204ENST00000459979 IDI2Q9BXS1 227 aa22.64■■□□□ 1.21
HOXD3-204ENST00000459979 ZFYVE28Q9HCC9 887 aa22.64■■□□□ 1.21
HOXD3-204ENST00000459979 SPDYE5A6NIY4 337 aa22.63■■□□□ 1.21
HOXD3-204ENST00000459979 MAP4K4O95819 1239 aaPredicted RBP22.63■■□□□ 1.21
HOXD3-204ENST00000459979 CYP2E1P05181 493 aaPredicted RBP22.63■■□□□ 1.21
HOXD3-204ENST00000459979 ARMC5Q96C12 935 aa22.63■■□□□ 1.21
HOXD3-204ENST00000459979 IL1RAPL2Q9NP60 686 aa22.63■■□□□ 1.21
HOXD3-204ENST00000459979 SNRKQ9NRH2 765 aa22.63■■□□□ 1.21
HOXD3-204ENST00000459979 EN2P19622 333 aaPredicted RBP22.62■■□□□ 1.21
HOXD3-204ENST00000459979 NFIAQ12857 509 aa22.62■■□□□ 1.21
HOXD3-204ENST00000459979 RAI14Q9P0K7 980 aa22.62■■□□□ 1.21
HOXD3-204ENST00000459979 LRP2BPQ9P2M1 347 aa22.62■■□□□ 1.21
HOXD3-204ENST00000459979 FAM198AQ9UFP1 575 aa22.62■■□□□ 1.21
HOXD3-204ENST00000459979 PTCH2Q9Y6C5 1203 aa22.62■■□□□ 1.21
HOXD3-204ENST00000459979 RFX7Q2KHR2 1363 aa22.62■■□□□ 1.21
HOXD3-204ENST00000459979 ENTPD3O75355 529 aa22.61■■□□□ 1.21
HOXD3-204ENST00000459979 NPM3O75607 178 aaKnown RBP22.61■■□□□ 1.21
HOXD3-204ENST00000459979 MIGA2Q7L4E1 593 aa22.61■■□□□ 1.21
HOXD3-204ENST00000459979 BTBD19C9JJ37 291 aa22.6■■□□□ 1.21
HOXD3-204ENST00000459979 IRF6O14896 467 aa22.6■■□□□ 1.21
HOXD3-204ENST00000459979 ECM2O94769 699 aaPredicted RBP22.6■■□□□ 1.21
HOXD3-204ENST00000459979 BTDP43251 543 aa22.6■■□□□ 1.21
HOXD3-204ENST00000459979 ZAP70P43403 619 aa22.6■■□□□ 1.21
HOXD3-204ENST00000459979 ERO1BQ86YB8 467 aa22.6■■□□□ 1.21
HOXD3-204ENST00000459979 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.6■■□□□ 1.21
HOXD3-204ENST00000459979 ARHGAP39Q9C0H5 1083 aa22.6■■□□□ 1.21
HOXD3-204ENST00000459979 MYO5AQ9Y4I1 1855 aaKnown RBP22.6■■□□□ 1.21
HOXD3-204ENST00000459979 MKI67P46013 3256 aaKnown RBP22.6■■□□□ 1.21
HOXD3-204ENST00000459979 MAST2Q6P0Q8 1798 aa22.59■■□□□ 1.21
HOXD3-204ENST00000459979 WDHD1O75717 1129 aaPredicted RBP22.59■■□□□ 1.21
HOXD3-204ENST00000459979 MYCP01106 439 aaPredicted RBP22.59■■□□□ 1.21
HOXD3-204ENST00000459979 CETPP11597 493 aa22.59■■□□□ 1.21
HOXD3-204ENST00000459979 RHBDL3P58872 404 aa22.59■■□□□ 1.21
HOXD3-204ENST00000459979 TMED8Q6PL24 325 aaPredicted RBP22.59■■□□□ 1.21
HOXD3-204ENST00000459979 DCTPP1Q9H773 170 aa22.59■■□□□ 1.21
HOXD3-204ENST00000459979 PCDH10Q9P2E7 1040 aa22.59■■□□□ 1.21
HOXD3-204ENST00000459979 APBB1O00213 710 aa22.58■■□□□ 1.21
HOXD3-204ENST00000459979 IFIT2P09913 472 aaKnown RBP22.58■■□□□ 1.21
HOXD3-204ENST00000459979 INPP5BP32019 993 aa22.58■■□□□ 1.21
HOXD3-204ENST00000459979 RGS3P49796 1198 aa22.58■■□□□ 1.21
HOXD3-204ENST00000459979 TCP10Q12799 353 aa22.58■■□□□ 1.21
HOXD3-204ENST00000459979 DCAF15Q66K64 600 aa22.58■■□□□ 1.21
HOXD3-204ENST00000459979 ZNF333Q96JL9 665 aa22.58■■□□□ 1.21
HOXD3-204ENST00000459979 PPP4CP60510 307 aa22.57■■□□□ 1.2
HOXD3-204ENST00000459979 PPIL2Q13356 520 aa22.57■■□□□ 1.2
HOXD3-204ENST00000459979 SNAPC2Q13487 334 aa22.57■■□□□ 1.2
HOXD3-204ENST00000459979 SLC9C1Q4G0N8 1177 aa22.57■■□□□ 1.2
HOXD3-204ENST00000459979 NAA16Q6N069 864 aaPredicted RBP22.57■■□□□ 1.2
HOXD3-204ENST00000459979 ZNF341Q9BYN7 854 aa22.57■■□□□ 1.2
HOXD3-204ENST00000459979 LRRCC1Q9C099 1032 aa22.57■■□□□ 1.2
HOXD3-204ENST00000459979 PIH1D3Q9NQM4 214 aaKnown RBP22.57■■□□□ 1.2
HOXD3-204ENST00000459979 BRCA2P51587 3418 aa22.56■■□□□ 1.2
HOXD3-204ENST00000459979 TLR2O60603 784 aa22.56■■□□□ 1.2
HOXD3-204ENST00000459979 ZFPM1Q8IX07 1006 aa22.56■■□□□ 1.2
HOXD3-204ENST00000459979 PCDHB15Q9Y5E8 787 aa22.56■■□□□ 1.2
HOXD3-204ENST00000459979 DOCK2Q92608 1830 aa22.56■■□□□ 1.2
HOXD3-204ENST00000459979 MAP3K10Q02779 954 aa22.55■■□□□ 1.2
HOXD3-204ENST00000459979 TMEM106CQ9BVX2 250 aa22.55■■□□□ 1.2
HOXD3-204ENST00000459979 ZNF112Q9UJU3 913 aa22.55■■□□□ 1.2
HOXD3-204ENST00000459979 ATRNL1Q5VV63 1379 aa22.54■■□□□ 1.2
HOXD3-204ENST00000459979 BAG3O95817 575 aa22.54■■□□□ 1.2
HOXD3-204ENST00000459979 LACTBP83111 547 aaPredicted RBP22.54■■□□□ 1.2
HOXD3-204ENST00000459979 ARHGEF6Q15052 776 aa22.54■■□□□ 1.2
HOXD3-204ENST00000459979 SH3TC2Q8TF17 1288 aa22.54■■□□□ 1.2
HOXD3-204ENST00000459979 CRBNQ96SW2 442 aa22.54■■□□□ 1.2
HOXD3-204ENST00000459979 DDX4Q9NQI0 724 aaKnown RBP22.54■■□□□ 1.2
HOXD3-204ENST00000459979 PLCG2P16885 1265 aa22.53■■□□□ 1.2
HOXD3-204ENST00000459979 AAMPQ13685 434 aa22.53■■□□□ 1.2
HOXD3-204ENST00000459979 TTF1Q15361 905 aaPredicted RBP22.53■■□□□ 1.2
HOXD3-204ENST00000459979 SLC4A8Q2Y0W8 1093 aa22.53■■□□□ 1.2
HOXD3-204ENST00000459979 SH3BP5LQ7L8J4 393 aa22.53■■□□□ 1.2
HOXD3-204ENST00000459979 COL2A1P02458 1487 aaPredicted RBP22.53■■□□□ 1.2
HOXD3-204ENST00000459979 ATP5JP18859 108 aa22.52■■□□□ 1.2
HOXD3-204ENST00000459979 PPATQ06203 517 aa22.52■■□□□ 1.2
HOXD3-204ENST00000459979 MAP3K12Q12852 859 aa22.52■■□□□ 1.2
HOXD3-204ENST00000459979 KIF22Q14807 665 aa22.52■■□□□ 1.2
HOXD3-204ENST00000459979 ADGRA1Q86SQ6 560 aa22.52■■□□□ 1.2
HOXD3-204ENST00000459979 NBPF11Q86T75 865 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms