RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 STX17P56962 302 aa13.8□□□□□ -0.2
SMPD4-213ENST00000454468 ZNF34Q8IZ26 560 aa13.8□□□□□ -0.2
SMPD4-213ENST00000454468 CCAR2Q8N163 923 aaKnown RBP13.8□□□□□ -0.2
SMPD4-213ENST00000454468 CPLX3Q8WVH0 158 aa13.8□□□□□ -0.2
SMPD4-213ENST00000454468 ZBTB9Q96C00 473 aa13.8□□□□□ -0.2
SMPD4-213ENST00000454468 IL17RAQ96F46 866 aa13.8□□□□□ -0.2
SMPD4-213ENST00000454468 LMO7Q8WWI1 1683 aa13.8□□□□□ -0.2
SMPD4-213ENST00000454468 ERVV-1B6SEH8 477 aa13.8□□□□□ -0.2
SMPD4-213ENST00000454468 COBLO75128 1261 aa13.8□□□□□ -0.2
SMPD4-213ENST00000454468 KLRK1P26718 216 aa13.8□□□□□ -0.2
SMPD4-213ENST00000454468 DHX8Q14562 1220 aaKnown RBP13.8□□□□□ -0.2
SMPD4-213ENST00000454468 ADALQ6DHV7 355 aa13.8□□□□□ -0.2
SMPD4-213ENST00000454468 GRAMD1CQ8IYS0 662 aa13.8□□□□□ -0.2
SMPD4-213ENST00000454468 GSG1L2A8MUP6 293 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 NMT2O60551 498 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 RPS8P62241 208 aaKnown RBP13.79□□□□□ -0.2
SMPD4-213ENST00000454468 ZNF174Q15697 407 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 TBC1D9BQ66K14 1250 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 BRAPQ7Z569 592 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 DHX58Q96C10 678 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 TMEM87BQ96K49 555 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 CNNM2Q9H8M5 875 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 RTCBQ9Y3I0 505 aaKnown RBP13.79□□□□□ -0.2
SMPD4-213ENST00000454468 TNKSO95271 1327 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 TPM3P06753 285 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 GOLGA8FQ08AF8 430 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 GOLGA8DPQ0D2H9 430 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 ZNF654Q8IZM8 581 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 CTCFLQ8NI51 663 aaPredicted RBP13.79□□□□□ -0.2
SMPD4-213ENST00000454468 SMARCC1Q92922 1105 aaPredicted RBP13.79□□□□□ -0.2
SMPD4-213ENST00000454468 PLIN2Q99541 437 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 ZMYM6O95789 1325 aa13.79□□□□□ -0.2
SMPD4-213ENST00000454468 C6orf229H3BNL8 230 aa13.78□□□□□ -0.2
SMPD4-213ENST00000454468 FOXP2O15409 715 aa13.78□□□□□ -0.2
SMPD4-213ENST00000454468 POLR2DO15514 142 aaKnown RBP13.78□□□□□ -0.2
SMPD4-213ENST00000454468 NLRP5P59047 1200 aa13.78□□□□□ -0.2
SMPD4-213ENST00000454468 TPTE2Q6XPS3 522 aa13.78□□□□□ -0.2
SMPD4-213ENST00000454468 TRMT44Q8IYL2 757 aaKnown RBP13.78□□□□□ -0.2
SMPD4-213ENST00000454468 CACTINQ8WUQ7 758 aaKnown RBP13.78□□□□□ -0.2
SMPD4-213ENST00000454468 DCCP43146 1447 aa13.78□□□□□ -0.2
SMPD4-213ENST00000454468 CCDC196A0A1B0GTZ2 297 aa13.78□□□□□ -0.2
SMPD4-213ENST00000454468 AK7Q96M32 723 aa13.78□□□□□ -0.2
SMPD4-213ENST00000454468 ALDH8A1Q9H2A2 487 aaPredicted RBP13.78□□□□□ -0.2
SMPD4-213ENST00000454468 CDHR2Q9BYE9 1310 aa13.78□□□□□ -0.2
SMPD4-213ENST00000454468 CAMTA2O94983 1202 aa13.78□□□□□ -0.2
SMPD4-213ENST00000454468 PRDX5P30044 214 aa13.78□□□□□ -0.2
SMPD4-213ENST00000454468 HIBADHP31937 336 aaKnown RBP13.78□□□□□ -0.2
SMPD4-213ENST00000454468 CCDC144BQ3MJ40 725 aa13.78□□□□□ -0.2
SMPD4-213ENST00000454468 WASF1Q92558 559 aa13.78□□□□□ -0.2
SMPD4-213ENST00000454468 FUCA2Q9BTY2 467 aa13.78□□□□□ -0.2
SMPD4-213ENST00000454468 KIAA1468Q9P260 1216 aa13.78□□□□□ -0.2
SMPD4-213ENST00000454468 TOM1O60784 492 aa13.77□□□□□ -0.2
SMPD4-213ENST00000454468 CYP2D6P10635 497 aa13.77□□□□□ -0.2
SMPD4-213ENST00000454468 PLA2G12BQ9BX93 195 aa13.77□□□□□ -0.2
SMPD4-213ENST00000454468 KCNF1Q9H3M0 494 aa13.77□□□□□ -0.2
SMPD4-213ENST00000454468 BRMS1Q9HCU9 246 aa13.77□□□□□ -0.2
SMPD4-213ENST00000454468 RTEL1Q9NZ71 1219 aa13.77□□□□□ -0.2
SMPD4-213ENST00000454468 WDHD1O75717 1129 aaPredicted RBP13.77□□□□□ -0.21
SMPD4-213ENST00000454468 SFPQP23246 707 aaKnown RBP eCLIP13.77□□□□□ -0.21
SMPD4-213ENST00000454468 ILDR1Q86SU0 546 aaPredicted RBP13.77□□□□□ -0.21
SMPD4-213ENST00000454468 AMOTL1Q8IY63 956 aa13.77□□□□□ -0.21
SMPD4-213ENST00000454468 PPIL4Q8WUA2 492 aaKnown RBP eCLIP13.77□□□□□ -0.21
SMPD4-213ENST00000454468 KCNH3Q9ULD8 1083 aa13.77□□□□□ -0.21
SMPD4-213ENST00000454468 RIMBP2O15034 1052 aa13.77□□□□□ -0.21
SMPD4-213ENST00000454468 FANCBQ8NB91 859 aa13.77□□□□□ -0.21
SMPD4-213ENST00000454468 OXER1Q8TDS5 423 aa13.77□□□□□ -0.21
SMPD4-213ENST00000454468 LY9Q9HBG7 655 aa13.77□□□□□ -0.21
SMPD4-213ENST00000454468 ADGRA1Q86SQ6 560 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 CCDC112Q8NEF3 446 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 UIMC1Q96RL1 719 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 XPO4Q9C0E2 1151 aaKnown RBP13.76□□□□□ -0.21
SMPD4-213ENST00000454468 HOOK1Q9UJC3 728 aaKnown RBP13.76□□□□□ -0.21
SMPD4-213ENST00000454468 SPDYE4A6NLX3 237 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 FOXN1O15353 648 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 CASP1P29466 404 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 EVX2Q03828 476 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 DIXDC1Q155Q3 683 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 PAXIP1Q6ZW49 1069 aaPredicted RBP13.76□□□□□ -0.21
SMPD4-213ENST00000454468 NBPF3Q9H094 633 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 ADAMTSL3P82987 1691 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 FAM205CA6NFA0 338 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 RIOK3O14730 519 aaKnown RBP13.76□□□□□ -0.21
SMPD4-213ENST00000454468 ATP1A3P13637 1013 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 UBASH3AP57075 661 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 PTPN14Q15678 1187 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 SLC51AQ86UW1 340 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 LINC00116Q8NCU8 138 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 MINPP1Q9UNW1 487 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 MAPK8IP1Q9UQF2 711 aa13.76□□□□□ -0.21
SMPD4-213ENST00000454468 C5P01031 1676 aa13.75□□□□□ -0.21
SMPD4-213ENST00000454468 MCM7P33993 719 aa13.75□□□□□ -0.21
SMPD4-213ENST00000454468 MAPK8IP2Q13387 824 aaPredicted RBP13.75□□□□□ -0.21
SMPD4-213ENST00000454468 RPGRQ92834 1020 aaKnown RBP13.75□□□□□ -0.21
SMPD4-213ENST00000454468 CRNKL1Q9BZJ0 848 aaKnown RBP13.75□□□□□ -0.21
SMPD4-213ENST00000454468 PDCL3Q9H2J4 239 aa13.75□□□□□ -0.21
SMPD4-213ENST00000454468 VWA3AA6NCI4 1184 aa13.75□□□□□ -0.21
SMPD4-213ENST00000454468 GNAT2P19087 354 aa13.75□□□□□ -0.21
SMPD4-213ENST00000454468 PICALMQ13492 652 aa13.75□□□□□ -0.21
SMPD4-213ENST00000454468 CDC25AP30304 524 aa13.75□□□□□ -0.21
SMPD4-213ENST00000454468 SNW1Q13573 536 aaKnown RBP13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms