RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 ZNF174Q15697 407 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 CDC27P30260 824 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 NR5A1Q13285 461 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 JAKMIP3Q5VZ66 844 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 ILDR1Q86SU0 546 aaPredicted RBP13.56□□□□□ -0.24
MSH6-204ENST00000445503 MB21D2Q8IYB1 491 aaPredicted RBP13.56□□□□□ -0.24
MSH6-204ENST00000445503 CAGE1Q8TC20 777 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 TMEM87BQ96K49 555 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 PIH1D3Q9NQM4 214 aaKnown RBP13.56□□□□□ -0.24
MSH6-204ENST00000445503 PPP2R2CQ9Y2T4 447 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 TRIM75PA6NK02 468 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 PRKAB2O43741 272 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 LMAN1P49257 510 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 CLCN6P51797 869 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 ZNF569Q5MCW4 686 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 PAXIP1Q6ZW49 1069 aaPredicted RBP13.56□□□□□ -0.24
MSH6-204ENST00000445503 KRT23Q9C075 422 aa13.56□□□□□ -0.24
MSH6-204ENST00000445503 PSDA5PKW4 1024 aaPredicted RBP13.55□□□□□ -0.24
MSH6-204ENST00000445503 CADPS2Q86UW7 1296 aa13.55□□□□□ -0.24
MSH6-204ENST00000445503 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.55□□□□□ -0.245e-7■■■□□ 15
MSH6-204ENST00000445503 ARHGAP6O43182 974 aa13.55□□□□□ -0.24
MSH6-204ENST00000445503 RHOXF2BP0C7M4 288 aa13.55□□□□□ -0.24
MSH6-204ENST00000445503 RHOXF2Q9BQY4 288 aa13.55□□□□□ -0.24
MSH6-204ENST00000445503 VPS54Q9P1Q0 977 aa13.55□□□□□ -0.24
MSH6-204ENST00000445503 ANTXR2P58335 489 aa13.55□□□□□ -0.24
MSH6-204ENST00000445503 NLRP5P59047 1200 aa13.55□□□□□ -0.24
MSH6-204ENST00000445503 FAM193AP78312 1265 aa13.55□□□□□ -0.24
MSH6-204ENST00000445503 SYCP1Q15431 976 aa13.55□□□□□ -0.24
MSH6-204ENST00000445503 RRAGBQ5VZM2 374 aa13.55□□□□□ -0.24
MSH6-204ENST00000445503 SHC4Q6S5L8 630 aa13.55□□□□□ -0.24
MSH6-204ENST00000445503 NOSTRINQ8IVI9 506 aa13.55□□□□□ -0.24
MSH6-204ENST00000445503 OSBPL5Q9H0X9 879 aaPredicted RBP13.55□□□□□ -0.24
MSH6-204ENST00000445503 HEG1Q9ULI3 1381 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 VWA3AA6NCI4 1184 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 CIAO1O76071 339 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 CCDC175P0C221 793 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 NUTM2AQ8IVF1 878 aaPredicted RBP13.54□□□□□ -0.24
MSH6-204ENST00000445503 IGSF22Q8N9C0 903 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.54□□□□□ -0.24
MSH6-204ENST00000445503 AKAP12Q02952 1782 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 PHACTR2O75167 634 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 DZIP3Q86Y13 1208 aaKnown RBP13.54□□□□□ -0.24
MSH6-204ENST00000445503 IFNL3Q8IZI9 196 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 ZSWIM5Q9P217 1185 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 V9GY48 417 aaPredicted RBP13.54□□□□□ -0.24
MSH6-204ENST00000445503 ADGRL3Q9HAR2 1447 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 CASP1P29466 404 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 SPECC1LQ69YQ0 1117 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 NYAP1Q6ZVC0 841 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 CATIPQ7Z7H3 387 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 SMYD4Q8IYR2 804 aaPredicted RBP13.54□□□□□ -0.24
MSH6-204ENST00000445503 LRRN4CLQ8ND94 238 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 TIGD1Q96MW7 591 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 PLIN2Q99541 437 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 SRRTQ9BXP5 876 aaKnown RBP13.54□□□□□ -0.24
MSH6-204ENST00000445503 VPS16Q9H269 839 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 RNF41Q9H4P4 317 aaPredicted RBP13.54□□□□□ -0.24
MSH6-204ENST00000445503 CNNM2Q9H8M5 875 aa13.54□□□□□ -0.24
MSH6-204ENST00000445503 SAMSN1Q9NSI8 373 aaKnown RBP13.54□□□□□ -0.24
MSH6-204ENST00000445503 GOLGA6L9A6NEM1 432 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 ADD2P35612 726 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 AK7Q96M32 723 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 CALCOCO1Q9P1Z2 691 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 AKR1B15C9JRZ8 316 aaPredicted RBP13.53□□□□□ -0.24
MSH6-204ENST00000445503 SH2B2O14492 632 aaPredicted RBP13.53□□□□□ -0.24
MSH6-204ENST00000445503 TXLNAP40222 546 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 NBPF11Q86T75 865 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 IQCA1Q86XH1 822 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 HPS5Q9UPZ3 1129 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 JAG2Q9Y219 1238 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 MROH7-TTC4A0A0A0MT08 1334 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 HLFQ16534 295 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 RILPL1Q5EBL4 403 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 ZBTB38Q8NAP3 1195 aaPredicted RBP13.53□□□□□ -0.24
MSH6-204ENST00000445503 SPATA5Q8NB90 893 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 GNL3LQ9NVN8 582 aaKnown RBP13.53□□□□□ -0.24
MSH6-204ENST00000445503 KANK3Q6NY19 840 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 SDR42E1Q8WUS8 393 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 BLZF1Q9H2G9 400 aa13.53□□□□□ -0.24
MSH6-204ENST00000445503 IKBKBO14920 756 aa13.52□□□□□ -0.24
MSH6-204ENST00000445503 TERF2Q15554 542 aa13.52□□□□□ -0.24
MSH6-204ENST00000445503 AKNAD1Q5T1N1 836 aa13.52□□□□□ -0.24
MSH6-204ENST00000445503 IFIT1BQ5T764 474 aaKnown RBP13.52□□□□□ -0.24
MSH6-204ENST00000445503 TAF3Q5VWG9 929 aa13.52□□□□□ -0.24
MSH6-204ENST00000445503 CTCFLQ8NI51 663 aaPredicted RBP13.52□□□□□ -0.24
MSH6-204ENST00000445503 GOLGA1Q92805 767 aa13.52□□□□□ -0.24
MSH6-204ENST00000445503 TEX13AQ9BXU3 409 aaPredicted RBP13.52□□□□□ -0.24
MSH6-204ENST00000445503 MAGEC2Q9UBF1 373 aaPredicted RBP13.52□□□□□ -0.24
MSH6-204ENST00000445503 PALLDQ8WX93 1383 aa13.52□□□□□ -0.24
MSH6-204ENST00000445503 ERLIN1O75477 346 aa13.52□□□□□ -0.25
MSH6-204ENST00000445503 PCCAP05165 728 aaPredicted RBP13.52□□□□□ -0.25
MSH6-204ENST00000445503 NAP1L1P55209 391 aaKnown RBP13.52□□□□□ -0.25
MSH6-204ENST00000445503 NEK11Q8NG66 645 aa13.52□□□□□ -0.25
MSH6-204ENST00000445503 PCDHB6Q9Y5E3 794 aa13.52□□□□□ -0.25
MSH6-204ENST00000445503 BCAMP50895 628 aa13.52□□□□□ -0.25
MSH6-204ENST00000445503 HSPA2P54652 639 aa13.52□□□□□ -0.25
MSH6-204ENST00000445503 EIF5P55010 431 aaKnown RBP13.52□□□□□ -0.25
MSH6-204ENST00000445503 CTSWP56202 376 aa13.52□□□□□ -0.25
MSH6-204ENST00000445503 AXDND1Q5T1B0 1012 aaPredicted RBP13.52□□□□□ -0.25
MSH6-204ENST00000445503 MLKLQ8NB16 471 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms