RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 FCHSD1Q86WN1 690 aa15.77■□□□□ 0.11
COL6A3-207ENST00000433762 SPATA5Q8NB90 893 aa15.77■□□□□ 0.11
COL6A3-207ENST00000433762 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.77■□□□□ 0.11
COL6A3-207ENST00000433762 ZNF330Q9Y3S2 320 aaPredicted RBP15.77■□□□□ 0.11
COL6A3-207ENST00000433762 CDC27P30260 824 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 MYL5Q02045 173 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 SSRP1Q08945 709 aaKnown RBP15.76■□□□□ 0.11
COL6A3-207ENST00000433762 SART3Q15020 963 aaKnown RBP15.76■□□□□ 0.11
COL6A3-207ENST00000433762 TMEM67Q5HYA8 995 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 IFNL3Q8IZI9 196 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 ERO1AQ96HE7 468 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 BCL11BQ9C0K0 894 aaPredicted RBP15.76■□□□□ 0.11
COL6A3-207ENST00000433762 NAPBQ9H115 298 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 FAM217BQ9NTX9 383 aaPredicted RBP15.76■□□□□ 0.11
COL6A3-207ENST00000433762 UBN2Q6ZU65 1347 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 DOT1LQ8TEK3 1739 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 CCDC196A0A1B0GTZ2 297 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 B4E1Z4 1266 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 APPP05067 770 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 AKNAD1Q5T1N1 836 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 SHC4Q6S5L8 630 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 ZNF579Q8NAF0 562 aaKnown RBP15.76■□□□□ 0.11
COL6A3-207ENST00000433762 NACAP1Q9BZK3 213 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 FOXP1Q9H334 677 aaPredicted RBP15.76■□□□□ 0.11
COL6A3-207ENST00000433762 IFNKQ9P0W0 207 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 WWC3Q9ULE0 1092 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 SLC12A7Q9Y666 1083 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 MYH6P13533 1939 aa15.76■□□□□ 0.11
COL6A3-207ENST00000433762 GPTP24298 496 aa15.75■□□□□ 0.11
COL6A3-207ENST00000433762 GNL2Q13823 731 aaKnown RBP15.75■□□□□ 0.11
COL6A3-207ENST00000433762 CT47A1Q5JQC4 288 aaPredicted RBP15.75■□□□□ 0.11
COL6A3-207ENST00000433762 CCDC85AQ96PX6 553 aaPredicted RBP15.75■□□□□ 0.11
COL6A3-207ENST00000433762 RNF41Q9H4P4 317 aaPredicted RBP15.75■□□□□ 0.11
COL6A3-207ENST00000433762 A0A1B0GUL6 1792 aa15.75■□□□□ 0.11
COL6A3-207ENST00000433762 DLEC1Q9Y238 1755 aa15.75■□□□□ 0.11
COL6A3-207ENST00000433762 FANCCQ00597 558 aa15.75■□□□□ 0.11
COL6A3-207ENST00000433762 ARID5BQ14865 1188 aa15.75■□□□□ 0.11
COL6A3-207ENST00000433762 SAFBQ15424 915 aaKnown RBP eCLIP15.75■□□□□ 0.11
COL6A3-207ENST00000433762 PARP10Q53GL7 1025 aa15.75■□□□□ 0.11
COL6A3-207ENST00000433762 RILPL1Q5EBL4 403 aa15.75■□□□□ 0.11
COL6A3-207ENST00000433762 TMED8Q6PL24 325 aaPredicted RBP15.75■□□□□ 0.11
COL6A3-207ENST00000433762 NFXL1Q6ZNB6 911 aa15.75■□□□□ 0.11
COL6A3-207ENST00000433762 DZIP3Q86Y13 1208 aaKnown RBP15.75■□□□□ 0.11
COL6A3-207ENST00000433762 KRI1Q8N9T8 703 aaKnown RBP15.75■□□□□ 0.11
COL6A3-207ENST00000433762 L2HGDHQ9H9P8 463 aa15.75■□□□□ 0.11
COL6A3-207ENST00000433762 SLIT2O94813 1529 aa15.74■□□□□ 0.11
COL6A3-207ENST00000433762 RANBP6O60518 1105 aaKnown RBP15.74■□□□□ 0.11
COL6A3-207ENST00000433762 SMC2O95347 1197 aa15.74■□□□□ 0.11
COL6A3-207ENST00000433762 NT5DC1Q5TFE4 455 aa15.74■□□□□ 0.11
COL6A3-207ENST00000433762 OLFM4Q6UX06 510 aa15.74■□□□□ 0.11
COL6A3-207ENST00000433762 KRBA2Q6ZNG9 492 aa15.74■□□□□ 0.11
COL6A3-207ENST00000433762 NOSTRINQ8IVI9 506 aa15.74■□□□□ 0.11
COL6A3-207ENST00000433762 TRIM22Q8IYM9 498 aa15.74■□□□□ 0.11
COL6A3-207ENST00000433762 TRIML1Q8N9V2 468 aa15.74■□□□□ 0.11
COL6A3-207ENST00000433762 SLC4A9Q96Q91 983 aa15.74■□□□□ 0.11
COL6A3-207ENST00000433762 EPB41L4AQ9HCS5 686 aaPredicted RBP15.74■□□□□ 0.11
COL6A3-207ENST00000433762 OGFRQ9NZT2 677 aa15.74■□□□□ 0.11
COL6A3-207ENST00000433762 ZBTB1Q9Y2K1 713 aa15.74■□□□□ 0.11
COL6A3-207ENST00000433762 ZNF831Q5JPB2 1677 aa15.74■□□□□ 0.11
COL6A3-207ENST00000433762 PPFIA3O75145 1194 aa15.73■□□□□ 0.11
COL6A3-207ENST00000433762 MMP1P03956 469 aa15.73■□□□□ 0.11
COL6A3-207ENST00000433762 ARMCX5Q6P1M9 558 aa15.73■□□□□ 0.11
COL6A3-207ENST00000433762 TMC6Q7Z403 805 aa15.73■□□□□ 0.11
COL6A3-207ENST00000433762 MICU3Q86XE3 530 aa15.73■□□□□ 0.11
COL6A3-207ENST00000433762 SYNE4Q8N205 404 aa15.73■□□□□ 0.11
COL6A3-207ENST00000433762 GTPBP4Q9BZE4 634 aaKnown RBP15.73■□□□□ 0.11
COL6A3-207ENST00000433762 USP27XA6NNY8 438 aa15.73■□□□□ 0.11
COL6A3-207ENST00000433762 IFIT3O14879 490 aaKnown RBP15.73■□□□□ 0.11
COL6A3-207ENST00000433762 E4F1Q66K89 784 aaPredicted RBP15.73■□□□□ 0.11
COL6A3-207ENST00000433762 KANK3Q6NY19 840 aa15.73■□□□□ 0.11
COL6A3-207ENST00000433762 MFSD6Q6ZSS7 791 aa15.73■□□□□ 0.11
COL6A3-207ENST00000433762 HSD3B7Q9H2F3 369 aa15.73■□□□□ 0.11
COL6A3-207ENST00000433762 GJB4Q9NTQ9 266 aa15.73■□□□□ 0.11
COL6A3-207ENST00000433762 DACH1Q9UI36 760 aa15.73■□□□□ 0.11
COL6A3-207ENST00000433762 CEP131Q9UPN4 1083 aa15.73■□□□□ 0.11
COL6A3-207ENST00000433762 GSG1L2A8MUP6 293 aa15.72■□□□□ 0.11
COL6A3-207ENST00000433762 DEXIO95424 95 aa15.72■□□□□ 0.11
COL6A3-207ENST00000433762 MARCKSP29966 332 aaPredicted RBP15.72■□□□□ 0.11
COL6A3-207ENST00000433762 CDCA7Q9BWT1 371 aaPredicted RBP15.72■□□□□ 0.11
COL6A3-207ENST00000433762 ZSWIM5Q9P217 1185 aa15.72■□□□□ 0.11
COL6A3-207ENST00000433762 ANAPC4Q9UJX5 808 aa15.72■□□□□ 0.11
COL6A3-207ENST00000433762 KCNH3Q9ULD8 1083 aa15.72■□□□□ 0.11
COL6A3-207ENST00000433762 MBD4O95243 580 aa15.72■□□□□ 0.11
COL6A3-207ENST00000433762 PCP11498 1178 aaKnown RBP15.72■□□□□ 0.11
COL6A3-207ENST00000433762 PTPREP23469 700 aa15.72■□□□□ 0.11
COL6A3-207ENST00000433762 EIF5P55010 431 aaKnown RBP15.72■□□□□ 0.11
COL6A3-207ENST00000433762 RASGRF1Q13972 1273 aa15.72■□□□□ 0.11
COL6A3-207ENST00000433762 ERCC4Q92889 916 aaPredicted RBP15.72■□□□□ 0.11
COL6A3-207ENST00000433762 AIFM3Q96NN9 605 aa15.72■□□□□ 0.11
COL6A3-207ENST00000433762 TMX1Q9H3N1 280 aa15.72■□□□□ 0.11
COL6A3-207ENST00000433762 BCL9LQ86UU0 1499 aa15.72■□□□□ 0.11
COL6A3-207ENST00000433762 A0A087WWV3 80 aa15.71■□□□□ 0.11
COL6A3-207ENST00000433762 SLU7O95391 586 aaKnown RBP15.71■□□□□ 0.11
COL6A3-207ENST00000433762 MAGEB6Q8N7X4 407 aa15.71■□□□□ 0.11
COL6A3-207ENST00000433762 ZNF397Q8NF99 534 aaPredicted RBP15.71■□□□□ 0.11
COL6A3-207ENST00000433762 PHKBQ93100 1093 aa15.71■□□□□ 0.11
COL6A3-207ENST00000433762 PPP1R13BQ96KQ4 1090 aa15.71■□□□□ 0.11
COL6A3-207ENST00000433762 PHLPP2Q6ZVD8 1323 aa15.71■□□□□ 0.11
COL6A3-207ENST00000433762 ERICH2A1L162 156 aa15.71■□□□□ 0.11
COL6A3-207ENST00000433762 DMTNQ08495 405 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms