RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 CHRM1P11229 460 aaPredicted RBP13.01□□□□□ -0.33
USP4-205ENST00000431357 GPTP24298 496 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 MAP3K12Q12852 859 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 MICU3Q86XE3 530 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 AIFM3Q96NN9 605 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 L2HGDHQ9H9P8 463 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 STRN4Q9NRL3 753 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 TRMT112Q9UI30 125 aaKnown RBP13.01□□□□□ -0.33
USP4-205ENST00000431357 DDX41Q9UJV9 622 aaKnown RBP13.01□□□□□ -0.33
USP4-205ENST00000431357 ZNF215Q9UL58 517 aaPredicted RBP13.01□□□□□ -0.33
USP4-205ENST00000431357 SLC12A7Q9Y666 1083 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 SPDYE4A6NLX3 237 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 IFNAR1P17181 557 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 FGFR2P21802 821 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 PHKA1P46020 1223 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 UBASH3AP57075 661 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 SAFBQ15424 915 aaKnown RBP eCLIP13.01□□□□□ -0.33
USP4-205ENST00000431357 KRBA2Q6ZNG9 492 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 IFNL3Q8IZI9 196 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 NAPBQ9H115 298 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 PRDM10Q9NQV6 1147 aa13.01□□□□□ -0.33
USP4-205ENST00000431357 ANKRD36CQ5JPF3 1778 aa13□□□□□ -0.33
USP4-205ENST00000431357 IFIT3O14879 490 aaKnown RBP13□□□□□ -0.33
USP4-205ENST00000431357 SLC5A1P13866 664 aa13□□□□□ -0.33
USP4-205ENST00000431357 GNAT2P19087 354 aa13□□□□□ -0.33
USP4-205ENST00000431357 LMOD1P29536 600 aaPredicted RBP13□□□□□ -0.33
USP4-205ENST00000431357 FCHSD1Q86WN1 690 aa13□□□□□ -0.33
USP4-205ENST00000431357 SYNE4Q8N205 404 aa13□□□□□ -0.33
USP4-205ENST00000431357 KRI1Q8N9T8 703 aaKnown RBP13□□□□□ -0.33
USP4-205ENST00000431357 PHKBQ93100 1093 aa13□□□□□ -0.33
USP4-205ENST00000431357 FAM217BQ9NTX9 383 aaPredicted RBP13□□□□□ -0.33
USP4-205ENST00000431357 KCNH3Q9ULD8 1083 aa13□□□□□ -0.33
USP4-205ENST00000431357 WWC3Q9ULE0 1092 aa13□□□□□ -0.33
USP4-205ENST00000431357 MORC2Q9Y6X9 1032 aaPredicted RBP13□□□□□ -0.33
USP4-205ENST00000431357 MYH3P11055 1940 aa13□□□□□ -0.33
USP4-205ENST00000431357 LRP6O75581 1613 aa13□□□□□ -0.33
USP4-205ENST00000431357 UBN2Q6ZU65 1347 aa13□□□□□ -0.33
USP4-205ENST00000431357 RANBP6O60518 1105 aaKnown RBP13□□□□□ -0.33
USP4-205ENST00000431357 SERPINC1P01008 464 aa13□□□□□ -0.33
USP4-205ENST00000431357 CYP19A1P11511 503 aaPredicted RBP13□□□□□ -0.33
USP4-205ENST00000431357 RCAN1P53805 252 aa13□□□□□ -0.33
USP4-205ENST00000431357 TMTC2Q8N394 836 aa13□□□□□ -0.33
USP4-205ENST00000431357 SPATA5Q8NB90 893 aa13□□□□□ -0.33
USP4-205ENST00000431357 CNNM3Q8NE01 707 aa13□□□□□ -0.33
USP4-205ENST00000431357 HSD3B7Q9H2F3 369 aa13□□□□□ -0.33
USP4-205ENST00000431357 DENND2AQ9ULE3 1009 aa13□□□□□ -0.33
USP4-205ENST00000431357 RXRAP19793 462 aa12.99□□□□□ -0.33
USP4-205ENST00000431357 NAA30Q147X3 362 aaPredicted RBP12.99□□□□□ -0.33
USP4-205ENST00000431357 SART3Q15020 963 aaKnown RBP12.99□□□□□ -0.33
USP4-205ENST00000431357 AKNAD1Q5T1N1 836 aa12.99□□□□□ -0.33
USP4-205ENST00000431357 NOSTRINQ8IVI9 506 aa12.99□□□□□ -0.33
USP4-205ENST00000431357 TRIM22Q8IYM9 498 aa12.99□□□□□ -0.33
USP4-205ENST00000431357 SLC26A6Q9BXS9 759 aa12.99□□□□□ -0.33
USP4-205ENST00000431357 NACAP1Q9BZK3 213 aa12.99□□□□□ -0.33
USP4-205ENST00000431357 DACH1Q9UI36 760 aa12.99□□□□□ -0.33
USP4-205ENST00000431357 ZHX1Q9UKY1 873 aaPredicted RBP12.99□□□□□ -0.33
USP4-205ENST00000431357 ABCA3Q99758 1704 aa12.99□□□□□ -0.33
USP4-205ENST00000431357 LRP5O75197 1615 aa12.99□□□□□ -0.33
USP4-205ENST00000431357 TIAM2Q8IVF5 1701 aa12.99□□□□□ -0.33
USP4-205ENST00000431357 ARAP2Q8WZ64 1704 aa12.99□□□□□ -0.33
USP4-205ENST00000431357 PHLPP2Q6ZVD8 1323 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 CCDC196A0A1B0GTZ2 297 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 GABPB1Q06547 395 aaPredicted RBP12.98□□□□□ -0.33
USP4-205ENST00000431357 PNOCQ13519 176 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 RILPL1Q5EBL4 403 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 MFSD6Q6ZSS7 791 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 VSTM4Q8IW00 320 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 FOXP1Q9H334 677 aaPredicted RBP12.98□□□□□ -0.33
USP4-205ENST00000431357 TMX1Q9H3N1 280 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 SENP2Q9HC62 589 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 ZSWIM5Q9P217 1185 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 MBD4O95243 580 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 MMP1P03956 469 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 IL6STP40189 918 aaPredicted RBP12.98□□□□□ -0.33
USP4-205ENST00000431357 CFAP100Q494V2 611 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 LONRF3Q496Y0 759 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 METTL16Q86W50 562 aaKnown RBP12.98□□□□□ -0.33
USP4-205ENST00000431357 ZNF34Q8IZ26 560 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 ZNF579Q8NAF0 562 aaKnown RBP12.98□□□□□ -0.33
USP4-205ENST00000431357 NKX2-3Q8TAU0 364 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 STAG1Q8WVM7 1258 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 EPB41L4AQ9HCS5 686 aaPredicted RBP12.98□□□□□ -0.33
USP4-205ENST00000431357 SLAIN2Q9P270 581 aa12.98□□□□□ -0.33
USP4-205ENST00000431357 XIRP1Q702N8 1843 aaKnown RBP12.97□□□□□ -0.33
USP4-205ENST00000431357 PNPLA7Q6ZV29 1317 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 ERICH2A1L162 156 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 ZSCAN12O43309 604 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 TOP1P11387 765 aaKnown RBP12.97□□□□□ -0.33
USP4-205ENST00000431357 ATP1A3P13637 1013 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 PTPREP23469 700 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 ETF1P62495 437 aaKnown RBP12.97□□□□□ -0.33
USP4-205ENST00000431357 CCDC93Q567U6 631 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 ISM2Q6H9L7 571 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 KANK3Q6NY19 840 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 MAGEB6Q8N7X4 407 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 TRIML1Q8N9V2 468 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 CLIC6Q96NY7 704 aa12.97□□□□□ -0.33
USP4-205ENST00000431357 SRRTQ9BXP5 876 aaKnown RBP12.97□□□□□ -0.33
USP4-205ENST00000431357 RNF41Q9H4P4 317 aaPredicted RBP12.97□□□□□ -0.33
USP4-205ENST00000431357 CEP131Q9UPN4 1083 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms