RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 NCAPHQ15003 741 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 APOA5Q6Q788 366 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 NYAP1Q6ZVC0 841 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 KCNG4Q8TDN1 519 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 IRS4O14654 1257 aaPredicted RBP9.93□□□□□ -0.82
USP40-203ENST00000427112 CCDC102BQ68D86 513 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 TMCO3Q6UWJ1 677 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 RBM43Q6ZSC3 357 aaKnown RBP9.93□□□□□ -0.82
USP40-203ENST00000427112 LRP10Q7Z4F1 713 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.93□□□□□ -0.82
USP40-203ENST00000427112 TMOD3Q9NYL9 352 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 RAI14Q9P0K7 980 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 ANGEL1Q9UNK9 670 aaKnown RBP9.93□□□□□ -0.82
USP40-203ENST00000427112 SLC4A4Q9Y6R1 1079 aa9.93□□□□□ -0.82
USP40-203ENST00000427112 WNT7AO00755 349 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 KIF6Q6ZMV9 814 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 MB21D2Q8IYB1 491 aaPredicted RBP9.92□□□□□ -0.82
USP40-203ENST00000427112 RASGRP4Q8TDF6 673 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 PSMB7Q99436 277 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 TACC3Q9Y6A5 838 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 DHX16O60231 1041 aaKnown RBP9.92□□□□□ -0.82
USP40-203ENST00000427112 VEGFAP15692 232 aaPredicted RBP9.92□□□□□ -0.82
USP40-203ENST00000427112 ACRBPQ8NEB7 543 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 APPBP2Q92624 585 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 IL17RAQ96F46 866 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 ERO1AQ96HE7 468 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 CAPZA3Q96KX2 299 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 DRC1Q96MC2 740 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 CDC5LQ99459 802 aaKnown RBP9.92□□□□□ -0.82
USP40-203ENST00000427112 CPVLQ9H3G5 476 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 RGPD1P0DJD0 1748 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 VWA3AA6NCI4 1184 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 ENC1O14682 589 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 EPB41L2O43491 1005 aaKnown RBP9.92□□□□□ -0.82
USP40-203ENST00000427112 PDE6AP16499 860 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 CASQ1P31415 396 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 MYL5Q02045 173 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 TERF2Q15554 542 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 EARS2Q5JPH6 523 aaKnown RBP9.92□□□□□ -0.82
USP40-203ENST00000427112 FAM47AQ5JRC9 791 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 CPLX2Q6PUV4 134 aaKnown RBP9.92□□□□□ -0.82
USP40-203ENST00000427112 GPATCH11Q8N954 259 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 ZNF274Q96GC6 653 aaPredicted RBP9.92□□□□□ -0.82
USP40-203ENST00000427112 SRRTQ9BXP5 876 aaKnown RBP9.92□□□□□ -0.82
USP40-203ENST00000427112 ZBTB1Q9Y2K1 713 aa9.92□□□□□ -0.82
USP40-203ENST00000427112 LMTK3Q96Q04 1460 aa9.91□□□□□ -0.82
USP40-203ENST00000427112 LMAN1P49257 510 aa9.91□□□□□ -0.82
USP40-203ENST00000427112 SSRP1Q08945 709 aaKnown RBP9.91□□□□□ -0.82
USP40-203ENST00000427112 ENOX2Q16206 610 aaKnown RBP9.91□□□□□ -0.82
USP40-203ENST00000427112 RABL6Q3YEC7 729 aaPredicted RBP9.91□□□□□ -0.82
USP40-203ENST00000427112 LCORLQ8N3X6 602 aa9.91□□□□□ -0.82
USP40-203ENST00000427112 BAG1Q99933 345 aaPredicted RBP9.91□□□□□ -0.82
USP40-203ENST00000427112 LLPHQ9BRT6 129 aaKnown RBP9.91□□□□□ -0.82
USP40-203ENST00000427112 FMN2Q9NZ56 1722 aa9.91□□□□□ -0.82
USP40-203ENST00000427112 MPHOSPH8Q99549 860 aa9.91□□□□□ -0.82
USP40-203ENST00000427112 GTPBP4Q9BZE4 634 aaKnown RBP9.91□□□□□ -0.82
USP40-203ENST00000427112 TRIM10Q9UDY6 481 aa9.91□□□□□ -0.82
USP40-203ENST00000427112 PPP2R2CQ9Y2T4 447 aa9.91□□□□□ -0.82
USP40-203ENST00000427112 V9GY48 417 aaPredicted RBP9.91□□□□□ -0.82
USP40-203ENST00000427112 SH3TC1Q8TE82 1336 aa9.91□□□□□ -0.82
USP40-203ENST00000427112 PNMA6AP0CW24 399 aaPredicted RBP9.91□□□□□ -0.82
USP40-203ENST00000427112 GYG1P46976 350 aa9.91□□□□□ -0.82
USP40-203ENST00000427112 ETF1P62495 437 aaKnown RBP9.91□□□□□ -0.82
USP40-203ENST00000427112 DYNLL1P63167 89 aaKnown RBP9.91□□□□□ -0.82
USP40-203ENST00000427112 TSGA10IPQ3SY00 556 aa9.91□□□□□ -0.82
USP40-203ENST00000427112 KLHL34Q8N239 644 aa9.91□□□□□ -0.82
USP40-203ENST00000427112 CSRNP2Q9H175 543 aa9.91□□□□□ -0.82
USP40-203ENST00000427112 MRPL44Q9H9J2 332 aaKnown RBP9.91□□□□□ -0.82
USP40-203ENST00000427112 INTS13Q9NVM9 706 aa9.91□□□□□ -0.82
USP40-203ENST00000427112 UTYO14607 1347 aa9.9□□□□□ -0.82
USP40-203ENST00000427112 PXDNLA1KZ92 1463 aa9.9□□□□□ -0.82
USP40-203ENST00000427112 SLC39A14Q15043 492 aa9.9□□□□□ -0.82
USP40-203ENST00000427112 SAFBQ15424 915 aaKnown RBP eCLIP9.9□□□□□ -0.82
USP40-203ENST00000427112 KIF4BQ2VIQ3 1234 aa9.9□□□□□ -0.82
USP40-203ENST00000427112 ZNF569Q5MCW4 686 aa9.9□□□□□ -0.82
USP40-203ENST00000427112 PCNTO95613 3336 aa9.9□□□□□ -0.82
USP40-203ENST00000427112 UBN2Q6ZU65 1347 aa9.9□□□□□ -0.82
USP40-203ENST00000427112 ADAMTS3O15072 1205 aa9.9□□□□□ -0.82
USP40-203ENST00000427112 N4BP1O75113 896 aaKnown RBP9.9□□□□□ -0.82
USP40-203ENST00000427112 ZPR1O75312 459 aa9.9□□□□□ -0.82
USP40-203ENST00000427112 GSDMDP57764 484 aa9.9□□□□□ -0.82
USP40-203ENST00000427112 AKAP17AQ02040 695 aaKnown RBP9.9□□□□□ -0.82
USP40-203ENST00000427112 PTPROQ16827 1216 aa9.9□□□□□ -0.82
USP40-203ENST00000427112 HSD3B7Q9H2F3 369 aa9.9□□□□□ -0.82
USP40-203ENST00000427112 RAD21O60216 631 aa9.9□□□□□ -0.83
USP40-203ENST00000427112 MCM7P33993 719 aa9.9□□□□□ -0.83
USP40-203ENST00000427112 MATR3P43243 847 aaKnown RBP eCLIP9.9□□□□□ -0.831e-6■■■■□ 22
USP40-203ENST00000427112 MFSD6Q6ZSS7 791 aa9.9□□□□□ -0.83
USP40-203ENST00000427112 GSPT2Q8IYD1 628 aaKnown RBP9.9□□□□□ -0.83
USP40-203ENST00000427112 SMARCE1Q969G3 411 aa9.9□□□□□ -0.83
USP40-203ENST00000427112 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.9□□□□□ -0.83
USP40-203ENST00000427112 EPB41L4AQ9HCS5 686 aaPredicted RBP9.9□□□□□ -0.83
USP40-203ENST00000427112 TAB2Q9NYJ8 693 aa9.9□□□□□ -0.83
USP40-203ENST00000427112 MAN1B1Q9UKM7 699 aa9.9□□□□□ -0.83
USP40-203ENST00000427112 ANKRD18BA2A2Z9 1011 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 SASH3O75995 380 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 OAS2P29728 719 aaKnown RBP9.89□□□□□ -0.83
USP40-203ENST00000427112 KRBA2Q6ZNG9 492 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 RASGRP2Q7LDG7 609 aa9.89□□□□□ -0.83
USP40-203ENST00000427112 UBR1Q8IWV7 1749 aa9.89□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms