RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 ZNF24P17028 368 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 FLIIQ13045 1269 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 CNTROBQ8N137 903 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 NOP53Q9NZM5 478 aaKnown RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 LIMCH1Q9UPQ0 1083 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 C2CD2Q9Y426 696 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 TUBB4AP04350 444 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 STK38Q15208 465 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 TRIM27P14373 513 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 CCDC170Q8IYT3 715 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 HSP90AA5PQ58FG0 334 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 E4F1Q66K89 784 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 GRAMD4Q6IC98 578 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 TTC30AQ86WT1 665 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 RAB11FIP4Q86YS3 637 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 IQUBQ8NA54 791 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 ALDH3A1P30838 453 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 PRPF40BQ6NWY9 871 aaKnown RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 GSPT2Q8IYD1 628 aaKnown RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 FTOQ9C0B1 505 aaKnown RBP eCLIP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 GBP1P32455 592 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 LONP2Q86WA8 852 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 PLVAPQ9BX97 442 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 SCAF11Q99590 1463 aaKnown RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 NYAP1Q6ZVC0 841 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 ELOA2Q8IYF1 753 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 STK24Q9Y6E0 443 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 SH2D4BQ5SQS7 431 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 PLCB1Q9NQ66 1216 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 SERPINA10Q9UK55 444 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 CORO1CQ9ULV4 474 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 NSD2O96028 1365 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 TEKT1Q969V4 418 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 HAUS1Q96CS2 278 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 XPO4Q9C0E2 1151 aaKnown RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 ELP1O95163 1332 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 COG7P83436 770 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 C11orf57Q6ZUT1 292 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 GCC1Q96CN9 775 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 DUSP9Q99956 384 aaKnown RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 CLCN2P51788 898 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 CCDC80Q76M96 950 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 ARHGAP30Q7Z6I6 1101 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 ATP6V0A1Q93050 837 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 PHF20L1A8MW92 1017 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 DIAPH1O60610 1272 aaKnown RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 PPP1R14BQ96C90 147 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 SPZ1Q9BXG8 430 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 SNAPC4Q5SXM2 1469 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 CPP00450 1065 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 NNTQ13423 1086 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 NAA16Q6N069 864 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 MTA3Q9BTC8 594 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 ZFYP08048 801 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 FOXD4Q12950 439 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 NAPGQ99747 312 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 TTLL13PA6NNM8 815 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 TSNAXIP1Q2TAA8 658 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 PTF1AQ7RTS3 328 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 NR1H4Q96RI1 486 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 PALMDQ9NP74 551 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 ANKIB1Q9P2G1 1089 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 SPDYE3A6NKU9 549 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 RHBDL3P58872 404 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 HDLBPQ00341 1268 aaKnown RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 TMEM62Q0P6H9 643 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 TBC1D25Q3MII6 688 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 FUT4P22083 530 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 ARMCX5Q6P1M9 558 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 CCT8L2Q96SF2 557 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 CCDC57Q2TAC2 916 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 TTC14Q96N46 770 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 NLRP3Q96P20 1036 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 AASDHPPTQ9NRN7 309 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 LARP7Q4G0J3 582 aaKnown RBP eCLIP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 MAP7D3Q8IWC1 876 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 GUCA1BQ9UMX6 200 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 PSMA5P28066 241 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 FANCCQ00597 558 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 CACNA2D3Q8IZS8 1091 aa3.82□□□□□ -1.8
SYNE1-212ENST00000423061 FBXO9Q9UK97 447 aaPredicted RBP3.82□□□□□ -1.8
SYNE1-212ENST00000423061 SMAPO00193 183 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 GNAT2P19087 354 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 SETDB1Q15047 1291 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 ATF7IPQ6VMQ6 1270 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 REXO1L1PQ8IX06 675 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 MAGI1Q96QZ7 1491 aaPredicted RBP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 UBE4AQ14139 1066 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 MUM1Q2TAK8 710 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 KLHL10Q6JEL2 608 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 IGSF22Q8N9C0 903 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 MAIP1Q8WWC4 291 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 PREBQ9HCU5 417 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 CCDC113Q9H0I3 377 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 NOD2Q9HC29 1040 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 OPHN1O60890 802 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 F13A1P00488 732 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 SUGP2Q8IX01 1082 aaKnown RBP eCLIP3.81□□□□□ -1.8
SYNE1-212ENST00000423061 SLC39A2Q9NP94 309 aa3.81□□□□□ -1.8
SYNE1-212ENST00000423061 DDX20Q9UHI6 824 aaKnown RBP3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms