RNA–Protein interactions for RNA: ENST00000419472.1

VPS13A-207, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 1 (best)

Gene VPS13A, Length 2,781 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-207ENST00000419472 CHPFQ8IZ52 775 aa6.55□□□□□ -1.36
VPS13A-207ENST00000419472 PTPN5P54829 565 aa6.55□□□□□ -1.36
VPS13A-207ENST00000419472 EXOC2Q96KP1 924 aa6.55□□□□□ -1.36
VPS13A-207ENST00000419472 OSMRQ99650 979 aa6.55□□□□□ -1.36
VPS13A-207ENST00000419472 TRIM8Q9BZR9 551 aa6.55□□□□□ -1.36
VPS13A-207ENST00000419472 ZCCHC2Q9C0B9 1178 aaKnown RBP6.55□□□□□ -1.36
VPS13A-207ENST00000419472 GRIP2Q9C0E4 1043 aa6.55□□□□□ -1.36
VPS13A-207ENST00000419472 FAM83GA6ND36 823 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 FAM86C2PA6NEL3 165 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 MMP20O60882 483 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 CILPO75339 1184 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 EYA4O95677 639 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 SDSP20132 328 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 STRN3Q13033 797 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 YOD1Q5VVQ6 348 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-207ENST00000419472 MRGPRX2Q96LB1 330 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 CEP63Q96MT8 703 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 SPATA9Q9BWV2 254 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 NCOA5Q9HCD5 579 aaKnown RBP6.54□□□□□ -1.36
VPS13A-207ENST00000419472 ZDHHC3Q9NYG2 299 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 GPN3Q9UHW5 284 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-207ENST00000419472 POLR3KQ9Y2Y1 108 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-207ENST00000419472 ERCC6L2Q5T890 1561 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 ROBO2Q9HCK4 1378 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 IFRD1O00458 451 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-207ENST00000419472 GTF2E1P29083 439 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-207ENST00000419472 ITKQ08881 620 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 NNTQ13423 1086 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 HDAC1Q13547 482 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-207ENST00000419472 CLEC4GQ6UXB4 293 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-207ENST00000419472 MPNDQ8N594 471 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 ZBTB38Q8NAP3 1195 aaPredicted RBP6.54□□□□□ -1.36
VPS13A-207ENST00000419472 OR6P1Q8NGX9 317 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 PMEPA1Q969W9 287 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 ZIC5Q96T25 663 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 CEP44Q9C0F1 390 aa6.54□□□□□ -1.36
VPS13A-207ENST00000419472 CLSPNQ9HAW4 1339 aa6.53□□□□□ -1.36
VPS13A-207ENST00000419472 KIAA0586Q9BVV6 1533 aa6.53□□□□□ -1.36
VPS13A-207ENST00000419472 TATP17735 454 aaPredicted RBP6.53□□□□□ -1.36
VPS13A-207ENST00000419472 CDC27P30260 824 aa6.53□□□□□ -1.36
VPS13A-207ENST00000419472 PTPN11Q06124 597 aaPredicted RBP6.53□□□□□ -1.36
VPS13A-207ENST00000419472 SAMD3Q8N6K7 520 aa6.53□□□□□ -1.36
VPS13A-207ENST00000419472 RBBP8NLQ8NC74 664 aaPredicted RBP6.53□□□□□ -1.36
VPS13A-207ENST00000419472 PRDM10Q9NQV6 1147 aa6.53□□□□□ -1.36
VPS13A-207ENST00000419472 IGF1RP08069 1367 aa6.53□□□□□ -1.36
VPS13A-207ENST00000419472 CCNFP41002 786 aa6.53□□□□□ -1.36
VPS13A-207ENST00000419472 SLC10A6Q3KNW5 377 aa6.53□□□□□ -1.36
VPS13A-207ENST00000419472 DIEXFQ68CQ4 756 aaKnown RBP6.53□□□□□ -1.36
VPS13A-207ENST00000419472 MPRIPQ6WCQ1 1025 aa6.53□□□□□ -1.36
VPS13A-207ENST00000419472 LRRTM3Q86VH5 581 aa6.53□□□□□ -1.36
VPS13A-207ENST00000419472 REXO1Q8N1G1 1221 aaKnown RBP6.53□□□□□ -1.36
VPS13A-207ENST00000419472 HOOK2Q96ED9 719 aa6.53□□□□□ -1.36
VPS13A-207ENST00000419472 YIPF4Q9BSR8 244 aa6.53□□□□□ -1.36
VPS13A-207ENST00000419472 BSDC1Q9NW68 430 aaPredicted RBP6.53□□□□□ -1.36
VPS13A-207ENST00000419472 KHNYNO15037 678 aaKnown RBP6.52□□□□□ -1.37
VPS13A-207ENST00000419472 EGFRP00533 1210 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 RPS26P62854 115 aaKnown RBP6.52□□□□□ -1.37
VPS13A-207ENST00000419472 GRIN3AQ8TCU5 1115 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 LEO1Q8WVC0 666 aaPredicted RBP6.52□□□□□ -1.37
VPS13A-207ENST00000419472 INSM2Q96T92 566 aaPredicted RBP6.52□□□□□ -1.37
VPS13A-207ENST00000419472 CDH19Q9H159 772 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 EEA1Q15075 1411 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 FOSP01100 380 aaPredicted RBP6.52□□□□□ -1.37
VPS13A-207ENST00000419472 LMNB1P20700 586 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 CDK8P49336 464 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 PIN1Q13526 163 aaPredicted RBP6.52□□□□□ -1.37
VPS13A-207ENST00000419472 FAM209AQ5JX71 171 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 EEPD1Q7L9B9 569 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 TMTC2Q8N394 836 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 STK35Q8TDR2 534 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 PTPRHQ9HD43 1115 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 AVENQ9NQS1 362 aaPredicted RBP6.52□□□□□ -1.37
VPS13A-207ENST00000419472 PHF20L1A8MW92 1017 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 ZIC2O95409 532 aaPredicted RBP6.52□□□□□ -1.37
VPS13A-207ENST00000419472 ITPKAP23677 461 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 ERICH6BQ5W0A0 696 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 WWC2Q6AWC2 1192 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 NCAPG2Q86XI2 1143 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 TIFAQ96CG3 184 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 PPCSQ9HAB8 311 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 BRD7Q9NPI1 651 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 AASDHPPTQ9NRN7 309 aa6.52□□□□□ -1.37
VPS13A-207ENST00000419472 LTBP3Q9NS15 1303 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 LMOD3Q0VAK6 560 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 HGSNATQ68CP4 663 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 ASAP3Q8TDY4 903 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 ZFATQ9P243 1243 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 CTTNBP2Q8WZ74 1663 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 KIF4AO95239 1232 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 ALDH1A1P00352 501 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 EPB42P16452 691 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 BMP6P22004 513 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 POU4F2Q12837 409 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 MLC1Q15049 377 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 VHLLQ6RSH7 139 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 NYAP1Q6ZVC0 841 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 OR13H1Q8NG92 308 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 RIN3Q8TB24 985 aa6.51□□□□□ -1.37
VPS13A-207ENST00000419472 PNISRQ8TF01 805 aaKnown RBP6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms