RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 UBE4AQ14139 1066 aa3.4□□□□□ -1.86
MCF2-204ENST00000414978 GALEQ14376 348 aa3.4□□□□□ -1.86
MCF2-204ENST00000414978 GRIN2CQ14957 1233 aa3.4□□□□□ -1.86
MCF2-204ENST00000414978 DALRD3Q5D0E6 543 aaKnown RBP3.4□□□□□ -1.86
MCF2-204ENST00000414978 TJAP1Q5JTD0 557 aa3.4□□□□□ -1.86
MCF2-204ENST00000414978 RUFY4Q6ZNE9 571 aa3.4□□□□□ -1.86
MCF2-204ENST00000414978 FERMT3Q86UX7 667 aa3.4□□□□□ -1.86
MCF2-204ENST00000414978 CACTIN-AS1Q8N1I8 211 aa3.4□□□□□ -1.86
MCF2-204ENST00000414978 C1QTNF2Q9BXJ5 285 aa3.4□□□□□ -1.86
MCF2-204ENST00000414978 SLC4A5Q9BY07 1137 aa3.4□□□□□ -1.86
MCF2-204ENST00000414978 MAP3K5Q99683 1374 aa3.4□□□□□ -1.86
MCF2-204ENST00000414978 ABCC5O15440 1437 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 MLLT1Q03111 559 aaPredicted RBP3.4□□□□□ -1.87
MCF2-204ENST00000414978 NFX1Q12986 1120 aaKnown RBP3.4□□□□□ -1.87
MCF2-204ENST00000414978 GRM2Q14416 872 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 NFE2L2Q16236 605 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 MTERF2Q49AM1 385 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 NCAPG2Q86XI2 1143 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 PRPF38AQ8NAV1 312 aaKnown RBP3.4□□□□□ -1.87
MCF2-204ENST00000414978 SVIPQ8NHG7 77 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 ALS2Q96Q42 1657 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 APBA2Q99767 749 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 CBX8Q9HC52 389 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 FAM8A1Q9UBU6 413 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 WASF2Q9Y6W5 498 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 ADGRL2O95490 1459 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 POTEMA6NI47 508 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 M0R2N6 131 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 EXOC5O00471 708 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 CREB3O43889 395 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 DNAJC6O75061 913 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 ZIC2O95409 532 aaPredicted RBP3.4□□□□□ -1.87
MCF2-204ENST00000414978 GNALP38405 381 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 WDR4P57081 412 aaKnown RBP3.4□□□□□ -1.87
MCF2-204ENST00000414978 SQSTM1Q13501 440 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 HFE2Q6ZVN8 426 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 SPATC1Q76KD6 591 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 PGBD3Q8N328 593 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 EAF1Q96JC9 268 aaPredicted RBP3.4□□□□□ -1.87
MCF2-204ENST00000414978 SLKQ9H2G2 1235 aaPredicted RBP3.4□□□□□ -1.87
MCF2-204ENST00000414978 SPC25Q9HBM1 224 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 PRDM10Q9NQV6 1147 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 TMEM260Q9NX78 707 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 GPN3Q9UHW5 284 aaPredicted RBP3.4□□□□□ -1.87
MCF2-204ENST00000414978 CD2APQ9Y5K6 639 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 KIAA1210Q9ULL0 1709 aa3.4□□□□□ -1.87
MCF2-204ENST00000414978 E9PCH4 1651 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 CICQ96RK0 1608 aaPredicted RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 NRKQ7Z2Y5 1582 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 USP31Q70CQ4 1352 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 KLRG2A4D1S0 409 aaPredicted RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 VARSP26640 1264 aaKnown RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 POU4F2Q12837 409 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 FOXD4Q12950 439 aaPredicted RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 TSHZ1Q6ZSZ6 1077 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 JAMLQ86YT9 394 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 RELL1Q8IUW5 271 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 MPHOSPH6Q99547 160 aaKnown RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 UBA5Q9GZZ9 404 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 ANKIB1Q9P2G1 1089 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 TRPC5Q9UL62 973 aaPredicted RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 PCDHB10Q9UN67 800 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 RRBP1Q9P2E9 1410 aaKnown RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 DCDC2BA2VCK2 349 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 ADH1CP00326 375 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 PF4P02776 101 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 FOXK2Q01167 660 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 NNTQ13423 1086 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 SIM2Q14190 667 aaPredicted RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 KANK3Q6NY19 840 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 BNC2Q6ZN30 1099 aaPredicted RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 LGR4Q9BXB1 951 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 OXCT2Q9BYC2 517 aaPredicted RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 RUBCNLQ9H714 662 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 IL21Q9HBE4 155 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 PAPPAQ13219 1627 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 WDR90Q96KV7 1748 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 CAPNS1P04632 268 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 DHX9Q08211 1270 aaKnown RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 FOXD4L6Q3SYB3 417 aaPredicted RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 C4orf17Q53FE4 359 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 FOXD4L3Q6VB84 417 aaPredicted RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 KDF1Q8NAX2 398 aaPredicted RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 RELTQ969Z4 430 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 TRIM52Q96A61 297 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 CRBNQ96SW2 442 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 GAS2L1Q99501 681 aaPredicted RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 SENP7Q9BQF6 1050 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 TNKS2Q9H2K2 1166 aa3.39□□□□□ -1.87
MCF2-204ENST00000414978 AVENQ9NQS1 362 aaPredicted RBP3.39□□□□□ -1.87
MCF2-204ENST00000414978 TRPM1Q7Z4N2 1603 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 PAGE1O75459 146 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 LTKP29376 864 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 MEX3CQ5U5Q3 659 aaKnown RBP3.38□□□□□ -1.87
MCF2-204ENST00000414978 SNX29Q8TEQ0 813 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 C7orf43Q8WVR3 580 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 SUSD3Q96L08 255 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 MAPK8IP1Q9UQF2 711 aa3.38□□□□□ -1.87
MCF2-204ENST00000414978 ARHGEF28Q8N1W1 1705 aaKnown RBP3.38□□□□□ -1.87
MCF2-204ENST00000414978 CENPBP07199 599 aaPredicted RBP3.38□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms