RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 SSC5DA1L4H1 1573 aa17.66■□□□□ 0.42
LIMS1-206ENST00000414829 ZNF157P51786 506 aaPredicted RBP17.66■□□□□ 0.42
LIMS1-206ENST00000414829 ADGRA1Q86SQ6 560 aa17.66■□□□□ 0.42
LIMS1-206ENST00000414829 ANKRD13AQ8IZ07 590 aa17.66■□□□□ 0.42
LIMS1-206ENST00000414829 DNAJC5GQ8N7S2 189 aa17.66■□□□□ 0.42
LIMS1-206ENST00000414829 MIGA1Q8NAN2 632 aa17.66■□□□□ 0.42
LIMS1-206ENST00000414829 SH3RF3Q8TEJ3 882 aaPredicted RBP17.66■□□□□ 0.42
LIMS1-206ENST00000414829 FSD1Q9BTV5 496 aa17.66■□□□□ 0.42
LIMS1-206ENST00000414829 ZNF341Q9BYN7 854 aa17.66■□□□□ 0.42
LIMS1-206ENST00000414829 OSBPL5Q9H0X9 879 aaPredicted RBP17.66■□□□□ 0.42
LIMS1-206ENST00000414829 CSADQ9Y600 493 aa17.66■□□□□ 0.42
LIMS1-206ENST00000414829 MYH2Q9UKX2 1941 aa17.65■□□□□ 0.42
LIMS1-206ENST00000414829 TCRBV5S4A2TA0A5A2 114 aa17.65■□□□□ 0.42
LIMS1-206ENST00000414829 HLA-DOAP06340 250 aa17.65■□□□□ 0.42
LIMS1-206ENST00000414829 USP5P45974 858 aa17.65■□□□□ 0.42
LIMS1-206ENST00000414829 LDLRAD1Q5T700 205 aa17.65■□□□□ 0.42
LIMS1-206ENST00000414829 REM2Q8IYK8 340 aaPredicted RBP17.65■□□□□ 0.42
LIMS1-206ENST00000414829 APPBP2Q92624 585 aa17.65■□□□□ 0.42
LIMS1-206ENST00000414829 AIDAQ96BJ3 306 aa17.65■□□□□ 0.42
LIMS1-206ENST00000414829 TAOK2Q9UL54 1235 aa17.65■□□□□ 0.42
LIMS1-206ENST00000414829 FLT1P17948 1338 aa17.65■□□□□ 0.42
LIMS1-206ENST00000414829 WDR33Q9C0J8 1336 aaKnown RBP17.65■□□□□ 0.42
LIMS1-206ENST00000414829 DOCK2Q92608 1830 aa17.65■□□□□ 0.42
LIMS1-206ENST00000414829 MAP2K2P36507 400 aa17.64■□□□□ 0.41
LIMS1-206ENST00000414829 AMOTL1Q8IY63 956 aa17.64■□□□□ 0.41
LIMS1-206ENST00000414829 TGFBRAP1Q8WUH2 860 aa17.64■□□□□ 0.41
LIMS1-206ENST00000414829 RIOK1Q9BRS2 568 aaKnown RBP17.64■□□□□ 0.41
LIMS1-206ENST00000414829 DDX4Q9NQI0 724 aaKnown RBP17.64■□□□□ 0.41
LIMS1-206ENST00000414829 UBE2Q2LH0YL09 131 aa17.63■□□□□ 0.41
LIMS1-206ENST00000414829 RNF113AO15541 343 aaKnown RBP17.63■□□□□ 0.41
LIMS1-206ENST00000414829 SLC10A3P09131 477 aa17.63■□□□□ 0.41
LIMS1-206ENST00000414829 VEGFBP49765 207 aa17.63■□□□□ 0.41
LIMS1-206ENST00000414829 PRKG1Q13976 671 aa17.63■□□□□ 0.41
LIMS1-206ENST00000414829 PLEKHM2Q8IWE5 1019 aa17.63■□□□□ 0.41
LIMS1-206ENST00000414829 JMYQ8N9B5 988 aa17.63■□□□□ 0.41
LIMS1-206ENST00000414829 CCDC136Q96JN2 1154 aa17.63■□□□□ 0.41
LIMS1-206ENST00000414829 WRNIP1Q96S55 665 aa17.63■□□□□ 0.41
LIMS1-206ENST00000414829 TRIM34Q9BYJ4 488 aa17.63■□□□□ 0.41
LIMS1-206ENST00000414829 PI4KBQ9UBF8 816 aa17.63■□□□□ 0.41
LIMS1-206ENST00000414829 HERC5Q9UII4 1024 aaKnown RBP17.63■□□□□ 0.41
LIMS1-206ENST00000414829 TBC1D12O60347 775 aa17.62■□□□□ 0.41
LIMS1-206ENST00000414829 GNAT2P19087 354 aa17.62■□□□□ 0.41
LIMS1-206ENST00000414829 MAP3K9P80192 1104 aa17.62■□□□□ 0.41
LIMS1-206ENST00000414829 MAP2K1Q02750 393 aaPredicted RBP17.62■□□□□ 0.41
LIMS1-206ENST00000414829 CYP4F22Q6NT55 531 aa17.62■□□□□ 0.41
LIMS1-206ENST00000414829 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.62■□□□□ 0.41
LIMS1-206ENST00000414829 SLC10A4Q96EP9 437 aa17.62■□□□□ 0.41
LIMS1-206ENST00000414829 ATP8A2Q9NTI2 1148 aa17.62■□□□□ 0.41
LIMS1-206ENST00000414829 CEP350Q5VT06 3117 aa17.61■□□□□ 0.41
LIMS1-206ENST00000414829 USP2O75604 605 aaPredicted RBP17.61■□□□□ 0.41
LIMS1-206ENST00000414829 MBD4O95243 580 aa17.61■□□□□ 0.41
LIMS1-206ENST00000414829 ZBTB48P10074 688 aaPredicted RBP17.61■□□□□ 0.41
LIMS1-206ENST00000414829 DYNLL1P63167 89 aaKnown RBP17.61■□□□□ 0.41
LIMS1-206ENST00000414829 GRM1Q13255 1194 aa17.61■□□□□ 0.41
LIMS1-206ENST00000414829 TTC6Q86TZ1 520 aa17.61■□□□□ 0.41
LIMS1-206ENST00000414829 RASAL3Q86YV0 1011 aa17.61■□□□□ 0.41
LIMS1-206ENST00000414829 MAPKAPK5Q8IW41 473 aa17.61■□□□□ 0.41
LIMS1-206ENST00000414829 TRIM6-TRIM34B2RNG4 842 aa17.6■□□□□ 0.41
LIMS1-206ENST00000414829 HIP1O00291 1037 aa17.6■□□□□ 0.41
LIMS1-206ENST00000414829 MOB2Q70IA6 237 aa17.6■□□□□ 0.41
LIMS1-206ENST00000414829 CDAN1Q8IWY9 1227 aa17.6■□□□□ 0.41
LIMS1-206ENST00000414829 BEGAINQ9BUH8 593 aa17.6■□□□□ 0.41
LIMS1-206ENST00000414829 POLR2AP24928 1970 aaKnown RBP17.59■□□□□ 0.41
LIMS1-206ENST00000414829 DDTLA6NHG4 134 aaPredicted RBP17.59■□□□□ 0.41
LIMS1-206ENST00000414829 CA12O43570 354 aa17.59■□□□□ 0.41
LIMS1-206ENST00000414829 MAP3K10Q02779 954 aa17.59■□□□□ 0.41
LIMS1-206ENST00000414829 VGLL4Q14135 290 aa17.59■□□□□ 0.41
LIMS1-206ENST00000414829 FOXP4Q8IVH2 680 aaPredicted RBP17.59■□□□□ 0.41
LIMS1-206ENST00000414829 LCORLQ8N3X6 602 aa17.59■□□□□ 0.41
LIMS1-206ENST00000414829 CRACR2BQ8N4Y2 399 aaPredicted RBP17.59■□□□□ 0.41
LIMS1-206ENST00000414829 EHD4Q9H223 541 aa17.59■□□□□ 0.41
LIMS1-206ENST00000414829 ZNF112Q9UJU3 913 aa17.59■□□□□ 0.41
LIMS1-206ENST00000414829 THSD7BQ9C0I4 1608 aa17.58■□□□□ 0.41
LIMS1-206ENST00000414829 FAM155AB1AL88 458 aaPredicted RBP17.58■□□□□ 0.4
LIMS1-206ENST00000414829 SREBF2Q12772 1141 aa17.58■□□□□ 0.4
LIMS1-206ENST00000414829 NOL9Q5SY16 702 aaKnown RBP17.58■□□□□ 0.4
LIMS1-206ENST00000414829 GIMAP6Q6P9H5 292 aa17.58■□□□□ 0.4
LIMS1-206ENST00000414829 MIGA2Q7L4E1 593 aa17.58■□□□□ 0.4
LIMS1-206ENST00000414829 SH3BP5LQ7L8J4 393 aa17.58■□□□□ 0.4
LIMS1-206ENST00000414829 ZFPM1Q8IX07 1006 aa17.58■□□□□ 0.4
LIMS1-206ENST00000414829 ARMT1Q9H993 441 aa17.58■□□□□ 0.4
LIMS1-206ENST00000414829 XPO5Q9HAV4 1204 aaKnown RBP eCLIP17.58■□□□□ 0.4
LIMS1-206ENST00000414829 PICK1Q9NRD5 415 aa17.58■□□□□ 0.4
LIMS1-206ENST00000414829 CTNND1O60716 968 aaKnown RBP17.57■□□□□ 0.4
LIMS1-206ENST00000414829 POLR3DP05423 398 aaPredicted RBP17.57■□□□□ 0.4
LIMS1-206ENST00000414829 MFAP1P55081 439 aaKnown RBP17.57■□□□□ 0.4
LIMS1-206ENST00000414829 INHBEP58166 350 aa17.57■□□□□ 0.4
LIMS1-206ENST00000414829 ZMYM1Q5SVZ6 1142 aa17.57■□□□□ 0.4
LIMS1-206ENST00000414829 SPRYD7Q5W111 196 aa17.57■□□□□ 0.4
LIMS1-206ENST00000414829 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.57■□□□□ 0.4
LIMS1-206ENST00000414829 ERO1BQ86YB8 467 aa17.57■□□□□ 0.4
LIMS1-206ENST00000414829 RILPL2Q969X0 211 aa17.57■□□□□ 0.4
LIMS1-206ENST00000414829 TBC1D2Q9BYX2 928 aa17.57■□□□□ 0.4
LIMS1-206ENST00000414829 NACAP1Q9BZK3 213 aa17.57■□□□□ 0.4
LIMS1-206ENST00000414829 GINM1Q9NU53 330 aa17.57■□□□□ 0.4
LIMS1-206ENST00000414829 MCM9Q9NXL9 1143 aa17.57■□□□□ 0.4
LIMS1-206ENST00000414829 MANSC4A6NHS7 340 aaPredicted RBP17.56■□□□□ 0.4
LIMS1-206ENST00000414829 SPDYE5A6NIY4 337 aa17.56■□□□□ 0.4
LIMS1-206ENST00000414829 GPAA1O43292 621 aa17.56■□□□□ 0.4
LIMS1-206ENST00000414829 METTL16Q86W50 562 aaKnown RBP17.56■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms