RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 RAC1P63000 192 aa6.44□□□□□ -1.38
BRCA1-204ENST00000412061 RPL6Q02878 288 aaKnown RBP6.44□□□□□ -1.38
BRCA1-204ENST00000412061 CCDC144BQ3MJ40 725 aa6.44□□□□□ -1.38
BRCA1-204ENST00000412061 MPRIPQ6WCQ1 1025 aa6.44□□□□□ -1.38
BRCA1-204ENST00000412061 REC114Q7Z4M0 266 aa6.44□□□□□ -1.38
BRCA1-204ENST00000412061 DHX37Q8IY37 1157 aaKnown RBP6.44□□□□□ -1.38
BRCA1-204ENST00000412061 GPBAR1Q8TDU6 330 aa6.44□□□□□ -1.38
BRCA1-204ENST00000412061 CCDC86Q9H6F5 360 aaKnown RBP6.44□□□□□ -1.38
BRCA1-204ENST00000412061 SBNO2Q9Y2G9 1366 aa6.43□□□□□ -1.38
BRCA1-204ENST00000412061 LOC100289279A0A1B0GTE1 492 aa6.43□□□□□ -1.38
BRCA1-204ENST00000412061 SPDYE3A6NKU9 549 aa6.43□□□□□ -1.38
BRCA1-204ENST00000412061 PIK3R2O00459 728 aa6.43□□□□□ -1.38
BRCA1-204ENST00000412061 DEAF1O75398 565 aaPredicted RBP6.43□□□□□ -1.38
BRCA1-204ENST00000412061 ECEL1O95672 775 aa6.43□□□□□ -1.38
BRCA1-204ENST00000412061 PTPN11Q06124 597 aaPredicted RBP6.43□□□□□ -1.38
BRCA1-204ENST00000412061 FOXD4L6Q3SYB3 417 aaPredicted RBP6.43□□□□□ -1.38
BRCA1-204ENST00000412061 FOXD4L3Q6VB84 417 aaPredicted RBP6.43□□□□□ -1.38
BRCA1-204ENST00000412061 FBXO11Q86XK2 927 aa6.43□□□□□ -1.38
BRCA1-204ENST00000412061 PCDHA4Q9UN74 947 aa6.43□□□□□ -1.38
BRCA1-204ENST00000412061 WDR3Q9UNX4 943 aaKnown RBP eCLIP6.43□□□□□ -1.38
BRCA1-204ENST00000412061 A0A0A0MRY4 1105 aa6.42□□□□□ -1.38
BRCA1-204ENST00000412061 DDX3YO15523 660 aaKnown RBP6.42□□□□□ -1.38
BRCA1-204ENST00000412061 ADAM11O75078 769 aa6.42□□□□□ -1.38
BRCA1-204ENST00000412061 CTSBP07858 339 aa6.42□□□□□ -1.38
BRCA1-204ENST00000412061 MCM4P33991 863 aa6.42□□□□□ -1.38
BRCA1-204ENST00000412061 ZNF165P49910 485 aa6.42□□□□□ -1.38
BRCA1-204ENST00000412061 FMR1NBQ8N0W7 255 aaPredicted RBP6.42□□□□□ -1.38
BRCA1-204ENST00000412061 PMFBP1Q8TBY8 1022 aa6.42□□□□□ -1.38
BRCA1-204ENST00000412061 CPLX3Q8WVH0 158 aa6.42□□□□□ -1.38
BRCA1-204ENST00000412061 TRIM11Q96F44 468 aa6.42□□□□□ -1.38
BRCA1-204ENST00000412061 BRMS1Q9HCU9 246 aa6.42□□□□□ -1.38
BRCA1-204ENST00000412061 GNB5O14775 395 aa6.41□□□□□ -1.38
BRCA1-204ENST00000412061 ZNF862O60290 1169 aa6.41□□□□□ -1.38
BRCA1-204ENST00000412061 MARCH6O60337 910 aa6.41□□□□□ -1.38
BRCA1-204ENST00000412061 LIG1P18858 919 aa6.41□□□□□ -1.38
BRCA1-204ENST00000412061 DUOXA2Q1HG44 320 aa6.41□□□□□ -1.38
BRCA1-204ENST00000412061 KIF4BQ2VIQ3 1234 aa6.41□□□□□ -1.38
BRCA1-204ENST00000412061 SOGA3Q5TF21 947 aa6.41□□□□□ -1.38
BRCA1-204ENST00000412061 PDZRN4Q6ZMN7 1036 aaPredicted RBP6.41□□□□□ -1.38
BRCA1-204ENST00000412061 NOL8Q76FK4 1167 aaKnown RBP6.41□□□□□ -1.38
BRCA1-204ENST00000412061 REXO1Q8N1G1 1221 aaKnown RBP6.41□□□□□ -1.38
BRCA1-204ENST00000412061 FERD3LQ96RJ6 166 aa6.41□□□□□ -1.38
BRCA1-204ENST00000412061 PLVAPQ9BX97 442 aa6.41□□□□□ -1.38
BRCA1-204ENST00000412061 SRRTQ9BXP5 876 aaKnown RBP6.41□□□□□ -1.38
BRCA1-204ENST00000412061 KCNK4Q9NYG8 393 aa6.41□□□□□ -1.38
BRCA1-204ENST00000412061 MKL2Q9ULH7 1088 aa6.41□□□□□ -1.38
BRCA1-204ENST00000412061 SNCAIPQ9Y6H5 919 aa6.41□□□□□ -1.38
BRCA1-204ENST00000412061 DLL1O00548 723 aa6.4□□□□□ -1.39
BRCA1-204ENST00000412061 SLFN14P0C7P3 912 aa6.4□□□□□ -1.39
BRCA1-204ENST00000412061 SNRPNP63162 240 aaKnown RBP6.4□□□□□ -1.39
BRCA1-204ENST00000412061 RBL2Q08999 1139 aa6.4□□□□□ -1.39
BRCA1-204ENST00000412061 WIPI1Q5MNZ9 446 aaPredicted RBP6.4□□□□□ -1.39
BRCA1-204ENST00000412061 SDE2Q6IQ49 451 aa6.4□□□□□ -1.39
BRCA1-204ENST00000412061 LINC00114Q6XXX2 140 aa6.4□□□□□ -1.39
BRCA1-204ENST00000412061 HDXQ7Z353 690 aa6.4□□□□□ -1.39
BRCA1-204ENST00000412061 BEND7Q8N7W2 519 aaPredicted RBP6.4□□□□□ -1.39
BRCA1-204ENST00000412061 ELMO3Q96BJ8 720 aa6.4□□□□□ -1.39
BRCA1-204ENST00000412061 AOC2O75106 756 aa6.39□□□□□ -1.39
BRCA1-204ENST00000412061 IMPDH2P12268 514 aa6.39□□□□□ -1.39
BRCA1-204ENST00000412061 TRIM28Q13263 835 aaKnown RBP6.39□□□□□ -1.39
BRCA1-204ENST00000412061 EXOSC6Q5RKV6 272 aaKnown RBP6.39□□□□□ -1.39
BRCA1-204ENST00000412061 GK5Q6ZS86 529 aa6.39□□□□□ -1.39
BRCA1-204ENST00000412061 CKAP2LQ8IYA6 745 aa6.39□□□□□ -1.39
BRCA1-204ENST00000412061 UBASH3BQ8TF42 649 aa6.39□□□□□ -1.39
BRCA1-204ENST00000412061 WDR89Q96FK6 387 aaPredicted RBP6.39□□□□□ -1.39
BRCA1-204ENST00000412061 PLPPR2Q96GM1 343 aa6.39□□□□□ -1.39
BRCA1-204ENST00000412061 CRBNQ96SW2 442 aa6.39□□□□□ -1.39
BRCA1-204ENST00000412061 WDR18Q9BV38 432 aa6.39□□□□□ -1.39
BRCA1-204ENST00000412061 PIF1Q9H611 641 aa6.39□□□□□ -1.39
BRCA1-204ENST00000412061 ZNF408Q9H9D4 720 aa6.39□□□□□ -1.39
BRCA1-204ENST00000412061 RAD18Q9NS91 495 aa6.39□□□□□ -1.39
BRCA1-204ENST00000412061 PPT2Q9UMR5 302 aa6.39□□□□□ -1.39
BRCA1-204ENST00000412061 TACC3Q9Y6A5 838 aa6.39□□□□□ -1.39
BRCA1-204ENST00000412061 SYNGAP1Q96PV0 1343 aa6.39□□□□□ -1.39
BRCA1-204ENST00000412061 GFRA2O00451 464 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 DLGAP3O95886 979 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 SELPP16109 830 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 CDK8P49336 464 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 EIF6P56537 245 aaKnown RBP6.38□□□□□ -1.39
BRCA1-204ENST00000412061 CLCQ05315 142 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 INPP5AQ14642 412 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 PRRT3Q5FWE3 981 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 FBXW10Q5XX13 1052 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 EGFLAMQ63HQ2 1017 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 LRFN4Q6PJG9 635 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 CCDC81Q6ZN84 652 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 PODNQ7Z5L7 613 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 CERS3Q8IU89 383 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 ANAPC16Q96DE5 110 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 SHDQ96IW2 340 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 RUSC1Q9BVN2 902 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 ZSWIM4Q9H7M6 989 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 EHMT1Q9H9B1 1298 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 NOP53Q9NZM5 478 aaKnown RBP6.38□□□□□ -1.39
BRCA1-204ENST00000412061 ZNRF3Q9ULT6 936 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 POLR3KQ9Y2Y1 108 aaPredicted RBP6.38□□□□□ -1.39
BRCA1-204ENST00000412061 PCDHB14Q9Y5E9 798 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 MRVI1Q9Y6F6 885 aa6.38□□□□□ -1.39
BRCA1-204ENST00000412061 MEGF11A6BM72 1044 aa6.37□□□□□ -1.39
BRCA1-204ENST00000412061 DCDC2CA8MYV0 355 aa6.37□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms