RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 EPXP11678 715 aa9.21□□□□□ -0.94
USP40-202ENST00000409945 C20orf204Q6ZNR8 217 aa9.21□□□□□ -0.94
USP40-202ENST00000409945 TGIF2Q9GZN2 237 aa9.21□□□□□ -0.94
USP40-202ENST00000409945 RPRD2Q5VT52 1461 aaKnown RBP9.21□□□□□ -0.94
USP40-202ENST00000409945 BAG6P46379 1132 aa9.2□□□□□ -0.94
USP40-202ENST00000409945 LCE2AQ5TA79 106 aaPredicted RBP9.2□□□□□ -0.94
USP40-202ENST00000409945 SLCO4C1Q6ZQN7 724 aa9.2□□□□□ -0.94
USP40-202ENST00000409945 WHAMMQ8TF30 809 aa9.2□□□□□ -0.94
USP40-202ENST00000409945 EID1Q9Y6B2 187 aa9.2□□□□□ -0.94
USP40-202ENST00000409945 CFAP65Q6ZU64 1925 aaKnown RBP9.2□□□□□ -0.94
USP40-202ENST00000409945 NUP155O75694 1391 aa9.19□□□□□ -0.94
USP40-202ENST00000409945 MPRIPQ6WCQ1 1025 aa9.19□□□□□ -0.94
USP40-202ENST00000409945 NECAB3Q96P71 396 aaPredicted RBP9.19□□□□□ -0.94
USP40-202ENST00000409945 SLC52A1Q9NWF4 448 aa9.19□□□□□ -0.94
USP40-202ENST00000409945 ADAMTS1Q9UHI8 967 aa9.19□□□□□ -0.94
USP40-202ENST00000409945 EFCAB6Q5THR3 1501 aa9.19□□□□□ -0.94
USP40-202ENST00000409945 STRCQ7RTU9 1775 aa9.19□□□□□ -0.94
USP40-202ENST00000409945 MINDY4BA8MYZ0 360 aa9.19□□□□□ -0.94
USP40-202ENST00000409945 GMPRP36959 345 aa9.19□□□□□ -0.94
USP40-202ENST00000409945 MAP2K3P46734 347 aa9.19□□□□□ -0.94
USP40-202ENST00000409945 BSNDQ8WZ55 320 aa9.19□□□□□ -0.94
USP40-202ENST00000409945 UNC13BO14795 1591 aa9.18□□□□□ -0.94
USP40-202ENST00000409945 VWDEQ8N2E2 1590 aa9.18□□□□□ -0.94
USP40-202ENST00000409945 TET3O43151 1660 aa9.18□□□□□ -0.94
USP40-202ENST00000409945 SMNDC1O75940 238 aaKnown RBP eCLIP9.18□□□□□ -0.94
USP40-202ENST00000409945 SRSF11Q05519 484 aaKnown RBP9.18□□□□□ -0.94
USP40-202ENST00000409945 C8orf37Q96NL8 207 aa9.18□□□□□ -0.94
USP40-202ENST00000409945 CAPN10Q9HC96 672 aa9.18□□□□□ -0.94
USP40-202ENST00000409945 USP35Q9P2H5 1018 aa9.18□□□□□ -0.94
USP40-202ENST00000409945 FAM160A1Q05DH4 1040 aa9.17□□□□□ -0.94
USP40-202ENST00000409945 NOC4LQ9BVI4 516 aaKnown RBP9.17□□□□□ -0.94
USP40-202ENST00000409945 CCSER2Q9H7U1 834 aa9.17□□□□□ -0.94
USP40-202ENST00000409945 JPH1Q9HDC5 661 aaPredicted RBP9.17□□□□□ -0.94
USP40-202ENST00000409945 GCC2Q8IWJ2 1684 aa9.17□□□□□ -0.94
USP40-202ENST00000409945 AFF1P51825 1210 aaKnown RBP9.17□□□□□ -0.94
USP40-202ENST00000409945 GALNT6Q8NCL4 622 aa9.17□□□□□ -0.94
USP40-202ENST00000409945 CLEC4MQ9H2X3 399 aaPredicted RBP9.17□□□□□ -0.94
USP40-202ENST00000409945 PPM1HQ9ULR3 514 aa9.17□□□□□ -0.94
USP40-202ENST00000409945 POLR1AO95602 1720 aaPredicted RBP9.16□□□□□ -0.94
USP40-202ENST00000409945 ECEL1O95672 775 aa9.16□□□□□ -0.94
USP40-202ENST00000409945 PCDH1Q08174 1060 aa9.16□□□□□ -0.94
USP40-202ENST00000409945 COL9A3Q14050 684 aaPredicted RBP9.16□□□□□ -0.94
USP40-202ENST00000409945 MICALL1Q8N3F8 863 aa9.16□□□□□ -0.94
USP40-202ENST00000409945 PHC3Q8NDX5 983 aa9.16□□□□□ -0.94
USP40-202ENST00000409945 FBXO41Q8TF61 875 aa9.16□□□□□ -0.94
USP40-202ENST00000409945 RHOVQ96L33 236 aa9.16□□□□□ -0.94
USP40-202ENST00000409945 ADAM19Q9H013 955 aa9.16□□□□□ -0.94
USP40-202ENST00000409945 GPN3Q9UHW5 284 aaPredicted RBP9.16□□□□□ -0.94
USP40-202ENST00000409945 IQGAP3Q86VI3 1631 aa9.16□□□□□ -0.94
USP40-202ENST00000409945 HFM1A2PYH4 1435 aa9.16□□□□□ -0.94
USP40-202ENST00000409945 M0R082 166 aa9.15□□□□□ -0.94
USP40-202ENST00000409945 ESRRAP11474 423 aaPredicted RBP9.15□□□□□ -0.94
USP40-202ENST00000409945 XRCC5P13010 732 aaKnown RBP9.15□□□□□ -0.94
USP40-202ENST00000409945 HOXB4P17483 251 aaPredicted RBP9.15□□□□□ -0.94
USP40-202ENST00000409945 FBXL19Q6PCT2 694 aa9.15□□□□□ -0.94
USP40-202ENST00000409945 LYPD4Q6UWN0 246 aa9.15□□□□□ -0.94
USP40-202ENST00000409945 GOLGA6L1Q8N7Z2 621 aa9.15□□□□□ -0.94
USP40-202ENST00000409945 ZNF417Q8TAU3 575 aa9.15□□□□□ -0.94
USP40-202ENST00000409945 GRIN3AQ8TCU5 1115 aa9.15□□□□□ -0.94
USP40-202ENST00000409945 IRF7Q92985 503 aa9.15□□□□□ -0.94
USP40-202ENST00000409945 ZNF587Q96SQ5 575 aaPredicted RBP9.15□□□□□ -0.94
USP40-202ENST00000409945 PPP4R2Q9NY27 417 aa9.15□□□□□ -0.94
USP40-202ENST00000409945 TM4SF5O14894 197 aa9.15□□□□□ -0.95
USP40-202ENST00000409945 RGS9O75916 674 aaPredicted RBP9.15□□□□□ -0.95
USP40-202ENST00000409945 B3GALT4O96024 378 aa9.15□□□□□ -0.95
USP40-202ENST00000409945 TFE3P19532 575 aaPredicted RBP9.15□□□□□ -0.95
USP40-202ENST00000409945 PAK2Q13177 524 aa9.15□□□□□ -0.95
USP40-202ENST00000409945 PCSK7Q16549 785 aa9.15□□□□□ -0.95
USP40-202ENST00000409945 RBSNQ9H1K0 784 aa9.15□□□□□ -0.95
USP40-202ENST00000409945 PCDHB5Q9Y5E4 795 aa9.15□□□□□ -0.95
USP40-202ENST00000409945 NAIPQ13075 1403 aa9.14□□□□□ -0.95
USP40-202ENST00000409945 KDM5AP29375 1690 aaKnown RBP9.14□□□□□ -0.95
USP40-202ENST00000409945 SOX1O00570 391 aaPredicted RBP9.14□□□□□ -0.95
USP40-202ENST00000409945 GARTP22102 1010 aa9.14□□□□□ -0.95
USP40-202ENST00000409945 GBP2P32456 591 aaPredicted RBP9.14□□□□□ -0.95
USP40-202ENST00000409945 CRKP46108 304 aa9.14□□□□□ -0.95
USP40-202ENST00000409945 LIG3P49916 1009 aa9.14□□□□□ -0.95
USP40-202ENST00000409945 IDI1Q13907 227 aa9.14□□□□□ -0.95
USP40-202ENST00000409945 CHSY3Q70JA7 882 aa9.14□□□□□ -0.95
USP40-202ENST00000409945 ANKRD24Q8TF21 1146 aa9.14□□□□□ -0.95
USP40-202ENST00000409945 EDARADDQ8WWZ3 215 aa9.14□□□□□ -0.95
USP40-202ENST00000409945 FRRS1LQ9P0K9 344 aa9.14□□□□□ -0.95
USP40-202ENST00000409945 NPHP4O75161 1426 aaPredicted RBP9.14□□□□□ -0.95
USP40-202ENST00000409945 NOS1P29475 1434 aa9.14□□□□□ -0.95
USP40-202ENST00000409945 UBR1Q8IWV7 1749 aa9.14□□□□□ -0.95
USP40-202ENST00000409945 SLURP2P0DP57 97 aa9.13□□□□□ -0.95
USP40-202ENST00000409945 PTPRAP18433 802 aa9.13□□□□□ -0.95
USP40-202ENST00000409945 PTPN11Q06124 597 aaPredicted RBP9.13□□□□□ -0.95
USP40-202ENST00000409945 PCNX4Q63HM2 1172 aa9.13□□□□□ -0.95
USP40-202ENST00000409945 TTBK2Q6IQ55 1244 aa9.13□□□□□ -0.95
USP40-202ENST00000409945 ZNF775Q96BV0 537 aaPredicted RBP9.13□□□□□ -0.95
USP40-202ENST00000409945 TMEM74Q96NL1 305 aa9.13□□□□□ -0.95
USP40-202ENST00000409945 CARD10Q9BWT7 1032 aa9.13□□□□□ -0.95
USP40-202ENST00000409945 NSFL1CQ9UNZ2 370 aaKnown RBP9.13□□□□□ -0.95
USP40-202ENST00000409945 SCAF11Q99590 1463 aaKnown RBP9.13□□□□□ -0.95
USP40-202ENST00000409945 BMP6P22004 513 aa9.13□□□□□ -0.95
USP40-202ENST00000409945 ZNF654Q8IZM8 581 aa9.13□□□□□ -0.95
USP40-202ENST00000409945 IL22RA1Q8N6P7 574 aa9.13□□□□□ -0.95
USP40-202ENST00000409945 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.13□□□□□ -0.95
USP40-202ENST00000409945 GDF2Q9UK05 429 aaPredicted RBP9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms