RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 STRCP1A6NGW2 1772 aa15.46■□□□□ 0.06
VPS54-203ENST00000409558 EP400Q96L91 3159 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 POLR2DO15514 142 aaKnown RBP15.45■□□□□ 0.06
VPS54-203ENST00000409558 CYP2D6P10635 497 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 CDC25AP30304 524 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 MYRIPQ8NFW9 859 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 IGDCC4Q8TDY8 1250 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 AGXT2Q9BYV1 514 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 ZMYM6O95789 1325 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 SALL1Q9NSC2 1324 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 ARFGEF2Q9Y6D5 1785 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 MAGEB6P1A0A0J9YX57 407 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 USP17L12C9JPN9 530 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 USP17L21D6R901 530 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 UBE3CQ15386 1083 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 PPP4R3BQ5MIZ7 849 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 EEF2KMTQ96G04 330 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 PLIN2Q99541 437 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 PCDHB6Q9Y5E3 794 aa15.45■□□□□ 0.06
VPS54-203ENST00000409558 CDKL5O76039 1030 aa15.44■□□□□ 0.06
VPS54-203ENST00000409558 EIF5P55010 431 aaKnown RBP15.44■□□□□ 0.06
VPS54-203ENST00000409558 SHC4Q6S5L8 630 aa15.44■□□□□ 0.06
VPS54-203ENST00000409558 ZNF34Q8IZ26 560 aa15.44■□□□□ 0.06
VPS54-203ENST00000409558 PLA2G4DQ86XP0 818 aa15.44■□□□□ 0.06
VPS54-203ENST00000409558 ALS2Q96Q42 1657 aa15.44■□□□□ 0.06
VPS54-203ENST00000409558 GNPATO15228 680 aa15.44■□□□□ 0.06
VPS54-203ENST00000409558 ZNF174Q15697 407 aa15.44■□□□□ 0.06
VPS54-203ENST00000409558 NBPF5PQ86XG9 351 aaPredicted RBP15.44■□□□□ 0.06
VPS54-203ENST00000409558 LRRC8AQ8IWT6 810 aa15.44■□□□□ 0.06
VPS54-203ENST00000409558 SMYD4Q8IYR2 804 aaPredicted RBP15.44■□□□□ 0.06
VPS54-203ENST00000409558 DHX58Q96C10 678 aa15.44■□□□□ 0.06
VPS54-203ENST00000409558 UIMC1Q96RL1 719 aa15.44■□□□□ 0.06
VPS54-203ENST00000409558 PDCL3Q9H2J4 239 aa15.44■□□□□ 0.06
VPS54-203ENST00000409558 KCPQ6ZWJ8 1503 aa15.44■□□□□ 0.06
VPS54-203ENST00000409558 PES1O00541 588 aaKnown RBP15.44■□□□□ 0.06
VPS54-203ENST00000409558 CTAGE5O15320 804 aa15.44■□□□□ 0.06
VPS54-203ENST00000409558 RAD21O60216 631 aa15.44■□□□□ 0.06
VPS54-203ENST00000409558 PDIA4P13667 645 aaKnown RBP15.44■□□□□ 0.06
VPS54-203ENST00000409558 PLEKHA8P1O95397 391 aa15.43■□□□□ 0.06
VPS54-203ENST00000409558 PRDX5P30044 214 aa15.43■□□□□ 0.06
VPS54-203ENST00000409558 PPARAQ07869 468 aa15.43■□□□□ 0.06
VPS54-203ENST00000409558 CAVIN4Q5BKX8 364 aa15.43■□□□□ 0.06
VPS54-203ENST00000409558 RASSF8Q8NHQ8 419 aa15.43■□□□□ 0.06
VPS54-203ENST00000409558 DPF2Q92785 391 aa15.43■□□□□ 0.06
VPS54-203ENST00000409558 ANKIB1Q9P2G1 1089 aa15.43■□□□□ 0.06
VPS54-203ENST00000409558 MAPK8IP1Q9UQF2 711 aa15.43■□□□□ 0.06
VPS54-203ENST00000409558 TNKSO95271 1327 aa15.43■□□□□ 0.06
VPS54-203ENST00000409558 DYNC1I1O14576 645 aa15.43■□□□□ 0.06
VPS54-203ENST00000409558 U2AF2P26368 475 aaKnown RBP eCLIP15.43■□□□□ 0.062e-9■■□□□ 11.8
VPS54-203ENST00000409558 MROH5Q6ZUA9 1318 aa15.43■□□□□ 0.06
VPS54-203ENST00000409558 LMTK3Q96Q04 1460 aa15.43■□□□□ 0.06
VPS54-203ENST00000409558 CCDC112Q8NEF3 446 aa15.43■□□□□ 0.06
VPS54-203ENST00000409558 CPVLQ9H3G5 476 aa15.43■□□□□ 0.06
VPS54-203ENST00000409558 CAMTA2O94983 1202 aa15.42■□□□□ 0.06
VPS54-203ENST00000409558 ZNF654Q8IZM8 581 aa15.42■□□□□ 0.06
VPS54-203ENST00000409558 PLA2G12BQ9BX93 195 aa15.42■□□□□ 0.06
VPS54-203ENST00000409558 FAM217BQ9NTX9 383 aaPredicted RBP15.42■□□□□ 0.06
VPS54-203ENST00000409558 KCNH3Q9ULD8 1083 aa15.42■□□□□ 0.06
VPS54-203ENST00000409558 PCDHA5Q9Y5H7 936 aa15.42■□□□□ 0.06
VPS54-203ENST00000409558 TCRBV5S4A2TA0A5A2 114 aa15.42■□□□□ 0.06
VPS54-203ENST00000409558 PTPN14Q15678 1187 aa15.42■□□□□ 0.06
VPS54-203ENST00000409558 TBC1D9BQ66K14 1250 aa15.42■□□□□ 0.06
VPS54-203ENST00000409558 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.42■□□□□ 0.06
VPS54-203ENST00000409558 TMEM232C9JQI7 657 aa15.42■□□□□ 0.06
VPS54-203ENST00000409558 FANCLQ9NW38 375 aa15.42■□□□□ 0.06
VPS54-203ENST00000409558 SERTAD1Q9UHV2 236 aa15.42■□□□□ 0.06
VPS54-203ENST00000409558 IFIT1BQ5T764 474 aaKnown RBP15.42■□□□□ 0.06
VPS54-203ENST00000409558 BRAPQ7Z569 592 aa15.42■□□□□ 0.06
VPS54-203ENST00000409558 TXNRD3Q86VQ6 643 aa15.42■□□□□ 0.06
VPS54-203ENST00000409558 PRR29P0C7W0 189 aa15.41■□□□□ 0.06
VPS54-203ENST00000409558 VEGFAP15692 232 aaPredicted RBP15.41■□□□□ 0.06
VPS54-203ENST00000409558 UBASH3AP57075 661 aa15.41■□□□□ 0.06
VPS54-203ENST00000409558 SLC39A14Q15043 492 aa15.41■□□□□ 0.06
VPS54-203ENST00000409558 AXDND1Q5T1B0 1012 aaPredicted RBP15.41■□□□□ 0.06
VPS54-203ENST00000409558 CEP135Q66GS9 1140 aa15.41■□□□□ 0.06
VPS54-203ENST00000409558 GPIHBP1Q8IV16 184 aa15.41■□□□□ 0.06
VPS54-203ENST00000409558 CDC5LQ99459 802 aaKnown RBP15.41■□□□□ 0.06
VPS54-203ENST00000409558 SAP30BPQ9UHR5 308 aaKnown RBP15.41■□□□□ 0.06
VPS54-203ENST00000409558 KIF1AQ12756 1690 aa15.41■□□□□ 0.06
VPS54-203ENST00000409558 TPM4P67936 248 aa15.41■□□□□ 0.06
VPS54-203ENST00000409558 OLFM4Q6UX06 510 aa15.41■□□□□ 0.06
VPS54-203ENST00000409558 ZNF710Q8N1W2 664 aa15.41■□□□□ 0.06
VPS54-203ENST00000409558 RASGRP4Q8TDF6 673 aa15.41■□□□□ 0.06
VPS54-203ENST00000409558 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.41■□□□□ 0.06
VPS54-203ENST00000409558 MRC1P22897 1456 aa15.41■□□□□ 0.06
VPS54-203ENST00000409558 SFPQP23246 707 aaKnown RBP eCLIP15.41■□□□□ 0.06
VPS54-203ENST00000409558 CCAR2Q8N163 923 aaKnown RBP15.41■□□□□ 0.06
VPS54-203ENST00000409558 RFX7Q2KHR2 1363 aa15.4■□□□□ 0.06
VPS54-203ENST00000409558 CDHR2Q9BYE9 1310 aa15.4■□□□□ 0.06
VPS54-203ENST00000409558 EPSTI1Q96J88 318 aa15.4■□□□□ 0.06
VPS54-203ENST00000409558 POLR3EQ9NVU0 708 aa15.4■□□□□ 0.06
VPS54-203ENST00000409558 SIPA1L3O60292 1781 aaPredicted RBP15.4■□□□□ 0.06
VPS54-203ENST00000409558 BCL9O00512 1426 aa15.4■□□□□ 0.06
VPS54-203ENST00000409558 ZNF142P52746 1687 aaPredicted RBP15.4■□□□□ 0.06
VPS54-203ENST00000409558 DHX8Q14562 1220 aaKnown RBP15.4■□□□□ 0.06
VPS54-203ENST00000409558 FANCBQ8NB91 859 aa15.4■□□□□ 0.06
VPS54-203ENST00000409558 VAT1LQ9HCJ6 419 aa15.4■□□□□ 0.06
VPS54-203ENST00000409558 GNL3LQ9NVN8 582 aaKnown RBP15.4■□□□□ 0.06
VPS54-203ENST00000409558 PHRF1Q9P1Y6 1649 aaKnown RBP15.4■□□□□ 0.06
VPS54-203ENST00000409558 ARID4AP29374 1257 aaPredicted RBP15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms