RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 EZH2Q15910 746 aaKnown RBP7.1□□□□□ -1.27
CLK1-202ENST00000409403 DTHD1Q6ZMT9 781 aa7.1□□□□□ -1.27
CLK1-202ENST00000409403 OXCT2Q9BYC2 517 aaPredicted RBP7.1□□□□□ -1.27
CLK1-202ENST00000409403 MBIPQ9NS73 344 aa7.1□□□□□ -1.27
CLK1-202ENST00000409403 CEP152O94986 1710 aa7.1□□□□□ -1.27
CLK1-202ENST00000409403 DISP2A7MBM2 1401 aa7.1□□□□□ -1.27
CLK1-202ENST00000409403 NFKBIEO00221 500 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 EIF2AK2P19525 551 aaKnown RBP7.09□□□□□ -1.27
CLK1-202ENST00000409403 RAD51AP2Q09MP3 1159 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 HS2ST1Q7LGA3 356 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 GPR161Q8N6U8 529 aaKnown RBP7.09□□□□□ -1.27
CLK1-202ENST00000409403 TMEM102Q8N9M5 508 aaPredicted RBP7.09□□□□□ -1.27
CLK1-202ENST00000409403 PBX4Q9BYU1 374 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 BHLHE41Q9C0J9 482 aaPredicted RBP7.09□□□□□ -1.27
CLK1-202ENST00000409403 PPM1HQ9ULR3 514 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 TTF2Q9UNY4 1162 aaKnown RBP7.09□□□□□ -1.27
CLK1-202ENST00000409403 ARHGAP35Q9NRY4 1499 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 KIAA1210Q9ULL0 1709 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 ADARB2-AS1A8MUL3 147 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 PDE2AO00408 941 aaPredicted RBP7.09□□□□□ -1.27
CLK1-202ENST00000409403 WIPF1O43516 503 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 KCNQ2O43526 872 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 HNRNPUQ00839 825 aaKnown RBP eCLIP7.09□□□□□ -1.27
CLK1-202ENST00000409403 PTPN12Q05209 780 aaKnown RBP7.09□□□□□ -1.27
CLK1-202ENST00000409403 FAM35AQ86V20 835 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 NXPE3Q969Y0 559 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 LRRC59Q96AG4 307 aaKnown RBP7.09□□□□□ -1.27
CLK1-202ENST00000409403 HHIPQ96QV1 700 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 RASSF4Q9H2L5 321 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 ZFYVE1Q9HBF4 777 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 KLF15Q9UIH9 416 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 SLC6A14Q9UN76 642 aa7.09□□□□□ -1.27
CLK1-202ENST00000409403 DLC1Q96QB1 1528 aa7.08□□□□□ -1.28
CLK1-202ENST00000409403 SMNDC1O75940 238 aaKnown RBP eCLIP7.08□□□□□ -1.28
CLK1-202ENST00000409403 VSIG8P0DPA2 414 aa7.08□□□□□ -1.28
CLK1-202ENST00000409403 ADH7P40394 386 aa7.08□□□□□ -1.28
CLK1-202ENST00000409403 GRIA4P48058 902 aa7.08□□□□□ -1.28
CLK1-202ENST00000409403 ATP11AP98196 1134 aa7.08□□□□□ -1.28
CLK1-202ENST00000409403 TGIF2Q9GZN2 237 aa7.08□□□□□ -1.28
CLK1-202ENST00000409403 GGT7Q9UJ14 662 aa7.08□□□□□ -1.28
CLK1-202ENST00000409403 AKAP2Q9Y2D5 859 aa7.08□□□□□ -1.28
CLK1-202ENST00000409403 NEURL1BA8MQ27 555 aa7.07□□□□□ -1.28
CLK1-202ENST00000409403 CPB1P15086 417 aa7.07□□□□□ -1.28
CLK1-202ENST00000409403 ITPKAP23677 461 aa7.07□□□□□ -1.28
CLK1-202ENST00000409403 ANKRD24Q8TF21 1146 aa7.07□□□□□ -1.28
CLK1-202ENST00000409403 NOC4LQ9BVI4 516 aaKnown RBP7.07□□□□□ -1.28
CLK1-202ENST00000409403 A0A096LPE4 126 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 A0A1W2PPZ6 126 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 METTL12A8MUP2 240 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 RRP9O43818 475 aaKnown RBP7.06□□□□□ -1.28
CLK1-202ENST00000409403 CEP135Q66GS9 1140 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 KRT27Q7Z3Y8 459 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 FCHSD1Q86WN1 690 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 MICALL1Q8N3F8 863 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 ASAP3Q8TDY4 903 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 PLD4Q96BZ4 506 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 MDFIQ99750 246 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 CCSER2Q9H7U1 834 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 NAGPAQ9UK23 515 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 PLCH1Q4KWH8 1693 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 TROQ12816 1431 aaPredicted RBP7.06□□□□□ -1.28
CLK1-202ENST00000409403 LAMC1P11047 1609 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 SPRED3Q2MJR0 410 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 NAALADL2Q58DX5 795 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 PERM1Q5SV97 790 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 USP48Q86UV5 1035 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 DNAJC5GQ8N7S2 189 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 SLC16A10Q8TF71 515 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 COL25A1Q9BXS0 654 aaPredicted RBP7.06□□□□□ -1.28
CLK1-202ENST00000409403 GGA1Q9UJY5 639 aa7.06□□□□□ -1.28
CLK1-202ENST00000409403 EPB41L3Q9Y2J2 1087 aaPredicted RBP7.06□□□□□ -1.28
CLK1-202ENST00000409403 CCNB3Q8WWL7 1395 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 NALCNQ8IZF0 1738 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 MST1RQ04912 1400 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 ELOA3CA0A087WX78 387 aaPredicted RBP7.05□□□□□ -1.28
CLK1-202ENST00000409403 ELOA3DA6NLF2 546 aaPredicted RBP7.05□□□□□ -1.28
CLK1-202ENST00000409403 ATF3P18847 181 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 CCDC85BQ15834 202 aaPredicted RBP7.05□□□□□ -1.28
CLK1-202ENST00000409403 ELOA3BQ3SY89 546 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 ZNF394Q53GI3 561 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 RNFT1Q5M7Z0 435 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 ELMSAN1Q6PJG2 1045 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 ERMP1Q7Z2K6 904 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 GOLGA6L1Q8N7Z2 621 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 ELOA3Q8NG57 546 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 POP1Q99575 1024 aaKnown RBP7.05□□□□□ -1.28
CLK1-202ENST00000409403 FRRS1LQ9P0K9 344 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 DDX41Q9UJV9 622 aaKnown RBP7.05□□□□□ -1.28
CLK1-202ENST00000409403 GDF2Q9UK05 429 aaPredicted RBP7.05□□□□□ -1.28
CLK1-202ENST00000409403 EID1Q9Y6B2 187 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 MYOM2P54296 1465 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 ZBED9Q6R2W3 1325 aa7.05□□□□□ -1.28
CLK1-202ENST00000409403 TMEM2Q9UHN6 1383 aa7.04□□□□□ -1.28
CLK1-202ENST00000409403 ATP10DQ9P241 1426 aa7.04□□□□□ -1.28
CLK1-202ENST00000409403 SLCO4C1Q6ZQN7 724 aa7.04□□□□□ -1.28
CLK1-202ENST00000409403 BSNDQ8WZ55 320 aa7.04□□□□□ -1.28
CLK1-202ENST00000409403 LPIN3Q9BQK8 851 aa7.04□□□□□ -1.28
CLK1-202ENST00000409403 CEP44Q9C0F1 390 aa7.04□□□□□ -1.28
CLK1-202ENST00000409403 SMG9Q9H0W8 520 aaKnown RBP7.04□□□□□ -1.28
CLK1-202ENST00000409403 ZNF576Q9H609 170 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms