RNA–Protein interactions for RNA: ENST00000402434.6

RTN4-207, Transcript of reticulon 4, humanhuman

TSL 5 BASIC

Gene RTN4, Length 1,456 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-207ENST00000402434 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.3■■□□□ 1.321e-15■■□□□ 12.1
RTN4-207ENST00000402434 ZBTB47Q9UFB7 747 aaPredicted RBP23.3■■□□□ 1.32
RTN4-207ENST00000402434 HSPA1AP0DMV8 641 aaKnown RBP23.3■■□□□ 1.32
RTN4-207ENST00000402434 HSPA1BP0DMV9 641 aaKnown RBP23.3■■□□□ 1.32
RTN4-207ENST00000402434 PICALMQ13492 652 aa23.3■■□□□ 1.32
RTN4-207ENST00000402434 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.3■■□□□ 1.32
RTN4-207ENST00000402434 SLC10A4Q96EP9 437 aa23.3■■□□□ 1.32
RTN4-207ENST00000402434 CLMNQ96JQ2 1002 aa23.3■■□□□ 1.32
RTN4-207ENST00000402434 ATRNL1Q5VV63 1379 aa23.29■■□□□ 1.32
RTN4-207ENST00000402434 AK9Q5TCS8 1911 aa23.29■■□□□ 1.32
RTN4-207ENST00000402434 TCRBV5S4A2TA0A5A2 114 aa23.29■■□□□ 1.32
RTN4-207ENST00000402434 DDTLA6NHG4 134 aaPredicted RBP23.29■■□□□ 1.32
RTN4-207ENST00000402434 MAP3K9P80192 1104 aa23.29■■□□□ 1.32
RTN4-207ENST00000402434 MAP3K10Q02779 954 aa23.29■■□□□ 1.32
RTN4-207ENST00000402434 TSHZ3Q63HK5 1081 aa23.29■■□□□ 1.32
RTN4-207ENST00000402434 KIF23Q02241 960 aaPredicted RBP23.28■■□□□ 1.32
RTN4-207ENST00000402434 MIGA2Q7L4E1 593 aa23.28■■□□□ 1.32
RTN4-207ENST00000402434 MIGA1Q8NAN2 632 aa23.28■■□□□ 1.32
RTN4-207ENST00000402434 PI4K2BQ8TCG2 481 aa23.28■■□□□ 1.32
RTN4-207ENST00000402434 CSRNP1Q96S65 589 aa23.28■■□□□ 1.32
RTN4-207ENST00000402434 OSBPL5Q9H0X9 879 aaPredicted RBP23.28■■□□□ 1.32
RTN4-207ENST00000402434 ZNF112Q9UJU3 913 aa23.28■■□□□ 1.32
RTN4-207ENST00000402434 COL2A1P02458 1487 aaPredicted RBP23.28■■□□□ 1.32
RTN4-207ENST00000402434 ZNF532Q9HCE3 1301 aa23.27■■□□□ 1.32
RTN4-207ENST00000402434 ERC2O15083 957 aa23.27■■□□□ 1.32
RTN4-207ENST00000402434 MX1P20591 662 aa23.27■■□□□ 1.32
RTN4-207ENST00000402434 DYNLL1P63167 89 aaKnown RBP23.27■■□□□ 1.32
RTN4-207ENST00000402434 SPRYD7Q5W111 196 aa23.27■■□□□ 1.32
RTN4-207ENST00000402434 ZNF341Q9BYN7 854 aa23.27■■□□□ 1.32
RTN4-207ENST00000402434 DDX24Q9GZR7 859 aaKnown RBP eCLIP23.27■■□□□ 1.32
RTN4-207ENST00000402434 GLRX3O76003 335 aaKnown RBP23.26■■□□□ 1.31
RTN4-207ENST00000402434 ADD2P35612 726 aa23.26■■□□□ 1.31
RTN4-207ENST00000402434 VGLL4Q14135 290 aa23.26■■□□□ 1.31
RTN4-207ENST00000402434 ZSCAN29Q8IWY8 852 aaPredicted RBP23.26■■□□□ 1.31
RTN4-207ENST00000402434 REM2Q8IYK8 340 aaPredicted RBP23.26■■□□□ 1.31
RTN4-207ENST00000402434 TGFBRAP1Q8WUH2 860 aa23.26■■□□□ 1.31
RTN4-207ENST00000402434 RIOK1Q9BRS2 568 aaKnown RBP23.26■■□□□ 1.31
RTN4-207ENST00000402434 STAP2Q9UGK3 403 aa23.26■■□□□ 1.31
RTN4-207ENST00000402434 OTOFQ9HC10 1997 aa23.25■■□□□ 1.31
RTN4-207ENST00000402434 ZBTB48P10074 688 aaPredicted RBP23.25■■□□□ 1.31
RTN4-207ENST00000402434 NUCB1Q02818 461 aa23.25■■□□□ 1.31
RTN4-207ENST00000402434 WRNIP1Q96S55 665 aa23.25■■□□□ 1.31
RTN4-207ENST00000402434 UBE3CQ15386 1083 aa23.24■■□□□ 1.31
RTN4-207ENST00000402434 KBTBD3Q8NAB2 608 aa23.24■■□□□ 1.31
RTN4-207ENST00000402434 DHX36Q9H2U1 1008 aaKnown RBP23.24■■□□□ 1.31
RTN4-207ENST00000402434 CSADQ9Y600 493 aa23.24■■□□□ 1.31
RTN4-207ENST00000402434 FLT1P17948 1338 aa23.24■■□□□ 1.31
RTN4-207ENST00000402434 CDK5RAP2Q96SN8 1893 aa23.24■■□□□ 1.31
RTN4-207ENST00000402434 TBC1D12O60347 775 aa23.24■■□□□ 1.31
RTN4-207ENST00000402434 CHD1LQ86WJ1 897 aa23.24■■□□□ 1.31
RTN4-207ENST00000402434 ZKSCAN4Q969J2 545 aaPredicted RBP23.24■■□□□ 1.31
RTN4-207ENST00000402434 WNK4Q96J92 1243 aa23.24■■□□□ 1.31
RTN4-207ENST00000402434 LNPKQ9C0E8 428 aa23.24■■□□□ 1.31
RTN4-207ENST00000402434 MAGEB6P1A0A0J9YX57 407 aa23.23■■□□□ 1.31
RTN4-207ENST00000402434 PHF20L1A8MW92 1017 aa23.23■■□□□ 1.31
RTN4-207ENST00000402434 FOXN1O15353 648 aa23.23■■□□□ 1.31
RTN4-207ENST00000402434 PDE1AP54750 535 aa23.23■■□□□ 1.31
RTN4-207ENST00000402434 B4GALNT3Q6L9W6 998 aa23.23■■□□□ 1.31
RTN4-207ENST00000402434 ZSCAN25Q6NSZ9 544 aa23.23■■□□□ 1.31
RTN4-207ENST00000402434 MAPKAPK5Q8IW41 473 aa23.23■■□□□ 1.31
RTN4-207ENST00000402434 AIDAQ96BJ3 306 aa23.23■■□□□ 1.31
RTN4-207ENST00000402434 BEGAINQ9BUH8 593 aa23.23■■□□□ 1.31
RTN4-207ENST00000402434 ELP3Q9H9T3 547 aa23.23■■□□□ 1.31
RTN4-207ENST00000402434 SNCAIPQ9Y6H5 919 aa23.23■■□□□ 1.31
RTN4-207ENST00000402434 FOCADQ5VW36 1801 aa23.23■■□□□ 1.31
RTN4-207ENST00000402434 CA12O43570 354 aa23.22■■□□□ 1.31
RTN4-207ENST00000402434 INPP5BP32019 993 aa23.22■■□□□ 1.31
RTN4-207ENST00000402434 GJA5P36382 358 aa23.22■■□□□ 1.31
RTN4-207ENST00000402434 TM4SF4P48230 202 aa23.22■■□□□ 1.31
RTN4-207ENST00000402434 SLFNL1Q499Z3 407 aa23.22■■□□□ 1.31
RTN4-207ENST00000402434 MKRN3Q13064 507 aaKnown RBP23.21■■□□□ 1.31
RTN4-207ENST00000402434 OPTNQ96CV9 577 aa23.21■■□□□ 1.31
RTN4-207ENST00000402434 PI4KBQ9UBF8 816 aa23.21■■□□□ 1.31
RTN4-207ENST00000402434 CHGBP05060 677 aa23.2■■□□□ 1.3
RTN4-207ENST00000402434 NOL9Q5SY16 702 aaKnown RBP23.2■■□□□ 1.3
RTN4-207ENST00000402434 METTL16Q86W50 562 aaKnown RBP23.2■■□□□ 1.3
RTN4-207ENST00000402434 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.2■■□□□ 1.3
RTN4-207ENST00000402434 MYH7P12883 1935 aa23.2■■□□□ 1.3
RTN4-207ENST00000402434 MANSC4A6NHS7 340 aaPredicted RBP23.19■■□□□ 1.3
RTN4-207ENST00000402434 SPDYE5A6NIY4 337 aa23.19■■□□□ 1.3
RTN4-207ENST00000402434 SLURP2P0DP57 97 aa23.19■■□□□ 1.3
RTN4-207ENST00000402434 USP5P45974 858 aa23.19■■□□□ 1.3
RTN4-207ENST00000402434 INHBEP58166 350 aa23.19■■□□□ 1.3
RTN4-207ENST00000402434 ERO1BQ86YB8 467 aa23.19■■□□□ 1.3
RTN4-207ENST00000402434 CNKSR2Q8WXI2 1034 aa23.19■■□□□ 1.3
RTN4-207ENST00000402434 HERC5Q9UII4 1024 aaKnown RBP23.19■■□□□ 1.3
RTN4-207ENST00000402434 PALD1Q9ULE6 856 aa23.19■■□□□ 1.3
RTN4-207ENST00000402434 ZFYP08048 801 aaPredicted RBP23.18■■□□□ 1.3
RTN4-207ENST00000402434 CTCFP49711 727 aaPredicted RBP23.18■■□□□ 1.3
RTN4-207ENST00000402434 SREBF2Q12772 1141 aa23.18■■□□□ 1.3
RTN4-207ENST00000402434 LCORLQ8N3X6 602 aa23.18■■□□□ 1.3
RTN4-207ENST00000402434 CRNKL1Q9BZJ0 848 aaKnown RBP23.18■■□□□ 1.3
RTN4-207ENST00000402434 FOXP4Q8IVH2 680 aaPredicted RBP23.17■■□□□ 1.3
RTN4-207ENST00000402434 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.17■■□□□ 1.3
RTN4-207ENST00000402434 SAGE1Q9NXZ1 904 aa23.17■■□□□ 1.3
RTN4-207ENST00000402434 LAMB1P07942 1786 aa23.17■■□□□ 1.3
RTN4-207ENST00000402434 RNF113AO15541 343 aaKnown RBP23.17■■□□□ 1.3
RTN4-207ENST00000402434 CTNND1O60716 968 aaKnown RBP23.17■■□□□ 1.3
RTN4-207ENST00000402434 PLEKHM2Q8IWE5 1019 aa23.17■■□□□ 1.3
RTN4-207ENST00000402434 MS4A4AQ96JQ5 239 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms