RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 SPDYE5A6NIY4 337 aa11□□□□□ -0.65
CAPN3-208ENST00000397204 CETPP11597 493 aa11□□□□□ -0.65
CAPN3-208ENST00000397204 EN2P19622 333 aaPredicted RBP11□□□□□ -0.65
CAPN3-208ENST00000397204 CAMK2BQ13554 666 aa11□□□□□ -0.65
CAPN3-208ENST00000397204 METTL24Q5JXM2 366 aa11□□□□□ -0.65
CAPN3-208ENST00000397204 HHIPL2Q6UWX4 724 aa11□□□□□ -0.65
CAPN3-208ENST00000397204 ZNF333Q96JL9 665 aa11□□□□□ -0.65
CAPN3-208ENST00000397204 ZDHHC15Q96MV8 337 aa11□□□□□ -0.65
CAPN3-208ENST00000397204 TMOD2Q9NZR1 351 aa11□□□□□ -0.65
CAPN3-208ENST00000397204 GNRH1P01148 92 aa10.99□□□□□ -0.65
CAPN3-208ENST00000397204 BCAMP50895 628 aa10.99□□□□□ -0.65
CAPN3-208ENST00000397204 CHAF1AQ13111 956 aaPredicted RBP10.99□□□□□ -0.65
CAPN3-208ENST00000397204 SNAPC2Q13487 334 aa10.99□□□□□ -0.65
CAPN3-208ENST00000397204 KIF22Q14807 665 aa10.99□□□□□ -0.65
CAPN3-208ENST00000397204 GRIK5Q16478 980 aa10.99□□□□□ -0.65
CAPN3-208ENST00000397204 SLC9C1Q4G0N8 1177 aa10.99□□□□□ -0.65
CAPN3-208ENST00000397204 LRRC24Q50LG9 513 aa10.99□□□□□ -0.65
CAPN3-208ENST00000397204 HABP4Q5JVS0 413 aaKnown RBP10.99□□□□□ -0.65
CAPN3-208ENST00000397204 ZNF687Q8N1G0 1237 aa10.99□□□□□ -0.65
CAPN3-208ENST00000397204 FAM43AQ8N2R8 423 aa10.99□□□□□ -0.65
CAPN3-208ENST00000397204 KRTAP3-3Q9BYR6 98 aa10.99□□□□□ -0.65
CAPN3-208ENST00000397204 KRTAP3-2Q9BYR7 98 aa10.99□□□□□ -0.65
CAPN3-208ENST00000397204 BICC1Q9H694 974 aaKnown RBP10.99□□□□□ -0.65
CAPN3-208ENST00000397204 WDR70Q9NW82 654 aa10.99□□□□□ -0.65
CAPN3-208ENST00000397204 IQSEC3Q9UPP2 1182 aaPredicted RBP10.99□□□□□ -0.65
CAPN3-208ENST00000397204 TLR2O60603 784 aa10.98□□□□□ -0.65
CAPN3-208ENST00000397204 IFIT1P09914 478 aaKnown RBP10.98□□□□□ -0.65
CAPN3-208ENST00000397204 PRMT2P55345 433 aa10.98□□□□□ -0.65
CAPN3-208ENST00000397204 CAP1Q01518 475 aa10.98□□□□□ -0.65
CAPN3-208ENST00000397204 DCAF15Q66K64 600 aa10.98□□□□□ -0.65
CAPN3-208ENST00000397204 APOBEC3HQ6NTF7 200 aaKnown RBP10.98□□□□□ -0.65
CAPN3-208ENST00000397204 VGLL2Q8N8G2 317 aa10.98□□□□□ -0.65
CAPN3-208ENST00000397204 MAST3O60307 1309 aa10.98□□□□□ -0.65
CAPN3-208ENST00000397204 KIF16BQ96L93 1317 aa10.98□□□□□ -0.65
CAPN3-208ENST00000397204 BTBD19C9JJ37 291 aa10.97□□□□□ -0.65
CAPN3-208ENST00000397204 IRF6O14896 467 aa10.97□□□□□ -0.65
CAPN3-208ENST00000397204 EVI5O60447 810 aa10.97□□□□□ -0.65
CAPN3-208ENST00000397204 FGFR2P21802 821 aa10.97□□□□□ -0.65
CAPN3-208ENST00000397204 PPATQ06203 517 aa10.97□□□□□ -0.65
CAPN3-208ENST00000397204 PPIL2Q13356 520 aa10.97□□□□□ -0.65
CAPN3-208ENST00000397204 PUM3Q15397 648 aaKnown RBP10.97□□□□□ -0.65
CAPN3-208ENST00000397204 SLC4A8Q2Y0W8 1093 aa10.97□□□□□ -0.65
CAPN3-208ENST00000397204 MRPL50Q8N5N7 158 aaKnown RBP10.97□□□□□ -0.65
CAPN3-208ENST00000397204 ANKRD44Q8N8A2 993 aa10.97□□□□□ -0.65
CAPN3-208ENST00000397204 WDR66Q8TBY9 1149 aa10.97□□□□□ -0.65
CAPN3-208ENST00000397204 ZKSCAN4Q969J2 545 aaPredicted RBP10.97□□□□□ -0.65
CAPN3-208ENST00000397204 WRNIP1Q96S55 665 aa10.97□□□□□ -0.65
CAPN3-208ENST00000397204 USP44Q9H0E7 712 aa10.97□□□□□ -0.65
CAPN3-208ENST00000397204 PTCH2Q9Y6C5 1203 aa10.97□□□□□ -0.65
CAPN3-208ENST00000397204 SNCAIPQ9Y6H5 919 aa10.97□□□□□ -0.65
CAPN3-208ENST00000397204 PTPRCP08575 1304 aa10.97□□□□□ -0.65
CAPN3-208ENST00000397204 CACNB3P54284 484 aa10.96□□□□□ -0.65
CAPN3-208ENST00000397204 LACTBP83111 547 aaPredicted RBP10.96□□□□□ -0.65
CAPN3-208ENST00000397204 FAM9BQ8IZU0 186 aa10.96□□□□□ -0.65
CAPN3-208ENST00000397204 FAM151AQ8WW52 585 aa10.96□□□□□ -0.65
CAPN3-208ENST00000397204 LPIN2Q92539 896 aa10.96□□□□□ -0.65
CAPN3-208ENST00000397204 ZNF341Q9BYN7 854 aa10.96□□□□□ -0.65
CAPN3-208ENST00000397204 EYA2O00167 538 aa10.95□□□□□ -0.66
CAPN3-208ENST00000397204 DPYSL4O14531 572 aa10.95□□□□□ -0.66
CAPN3-208ENST00000397204 HOXD10P28358 340 aa10.95□□□□□ -0.66
CAPN3-208ENST00000397204 C17orf99Q6UX52 265 aa10.95□□□□□ -0.66
CAPN3-208ENST00000397204 MIGA2Q7L4E1 593 aa10.95□□□□□ -0.66
CAPN3-208ENST00000397204 PLSCR2Q9NRY7 297 aa10.95□□□□□ -0.66
CAPN3-208ENST00000397204 ZNF112Q9UJU3 913 aa10.95□□□□□ -0.66
CAPN3-208ENST00000397204 ECM29Q5VYK3 1845 aa10.95□□□□□ -0.66
CAPN3-208ENST00000397204 RANBP2P49792 3224 aaKnown RBP10.95□□□□□ -0.66
CAPN3-208ENST00000397204 ZNF521Q96K83 1311 aa10.94□□□□□ -0.66
CAPN3-208ENST00000397204 SLC5A1P13866 664 aa10.94□□□□□ -0.66
CAPN3-208ENST00000397204 E2F4Q16254 413 aa10.94□□□□□ -0.66
CAPN3-208ENST00000397204 ANKRD23Q86SG2 305 aa10.94□□□□□ -0.66
CAPN3-208ENST00000397204 KLHDC4Q8TBB5 520 aa10.94□□□□□ -0.66
CAPN3-208ENST00000397204 KCNH4Q9UQ05 1017 aa10.94□□□□□ -0.66
CAPN3-208ENST00000397204 RPAP1Q9BWH6 1393 aaPredicted RBP10.93□□□□□ -0.66
CAPN3-208ENST00000397204 INPP5BP32019 993 aa10.93□□□□□ -0.66
CAPN3-208ENST00000397204 ZEB1P37275 1124 aaPredicted RBP10.93□□□□□ -0.66
CAPN3-208ENST00000397204 RFX5P48382 616 aaPredicted RBP10.93□□□□□ -0.66
CAPN3-208ENST00000397204 CDC42EP5Q6NZY7 148 aa10.93□□□□□ -0.66
CAPN3-208ENST00000397204 SH3TC2Q8TF17 1288 aa10.93□□□□□ -0.66
CAPN3-208ENST00000397204 SSH1Q8WYL5 1049 aa10.93□□□□□ -0.66
CAPN3-208ENST00000397204 ARHGAP39Q9C0H5 1083 aa10.93□□□□□ -0.66
CAPN3-208ENST00000397204 GNL3LQ9NVN8 582 aaKnown RBP10.93□□□□□ -0.66
CAPN3-208ENST00000397204 SRRDQ9UH36 339 aa10.93□□□□□ -0.66
CAPN3-208ENST00000397204 LAMB1P07942 1786 aa10.93□□□□□ -0.66
CAPN3-208ENST00000397204 TRIOBPQ9H2D6 2365 aa10.92□□□□□ -0.66
CAPN3-208ENST00000397204 E9PSI1 815 aa10.92□□□□□ -0.66
CAPN3-208ENST00000397204 PDHXO00330 501 aa10.92□□□□□ -0.66
CAPN3-208ENST00000397204 CXCL11O14625 94 aa10.92□□□□□ -0.66
CAPN3-208ENST00000397204 PSMC4P43686 418 aa10.92□□□□□ -0.66
CAPN3-208ENST00000397204 ATG9AQ7Z3C6 839 aa10.92□□□□□ -0.66
CAPN3-208ENST00000397204 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.92□□□□□ -0.66
CAPN3-208ENST00000397204 NKX2-3Q8TAU0 364 aa10.92□□□□□ -0.66
CAPN3-208ENST00000397204 USP40Q9NVE5 1235 aa10.92□□□□□ -0.66
CAPN3-208ENST00000397204 CEP126Q9P2H0 1117 aa10.92□□□□□ -0.66
CAPN3-208ENST00000397204 HDAC5Q9UQL6 1122 aa10.92□□□□□ -0.66
CAPN3-208ENST00000397204 DAGLAQ9Y4D2 1042 aa10.92□□□□□ -0.66
CAPN3-208ENST00000397204 SEMA3EO15041 775 aa10.91□□□□□ -0.66
CAPN3-208ENST00000397204 CIAO1O76071 339 aa10.91□□□□□ -0.66
CAPN3-208ENST00000397204 LDHBP07195 334 aaKnown RBP10.91□□□□□ -0.66
CAPN3-208ENST00000397204 FXR1P51114 621 aaKnown RBP eCLIP10.91□□□□□ -0.66
CAPN3-208ENST00000397204 TCP10Q12799 353 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms