RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 MRRFQ96E11 262 aaKnown RBP8.03□□□□□ -1.12
UPF2-203ENST00000397053 CAPZA3Q96KX2 299 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 ADPGKQ9BRR6 497 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 DACT1Q9NYF0 836 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 TRPC6Q9Y210 931 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 EXOC3O60645 756 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 SYT1P21579 422 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 CCDC141Q6ZP82 1450 aa8.03□□□□□ -1.12
UPF2-203ENST00000397053 CAPN9O14815 690 aa8.02□□□□□ -1.12
UPF2-203ENST00000397053 TXKP42681 527 aa8.02□□□□□ -1.12
UPF2-203ENST00000397053 DIXDC1Q155Q3 683 aa8.02□□□□□ -1.12
UPF2-203ENST00000397053 ZNF174Q15697 407 aa8.02□□□□□ -1.12
UPF2-203ENST00000397053 CWF19L2Q2TBE0 894 aaKnown RBP8.02□□□□□ -1.12
UPF2-203ENST00000397053 CEP128Q6ZU80 1094 aa8.02□□□□□ -1.12
UPF2-203ENST00000397053 TMX3Q96JJ7 454 aa8.02□□□□□ -1.12
UPF2-203ENST00000397053 USP21Q9UK80 565 aa8.02□□□□□ -1.12
UPF2-203ENST00000397053 PDE1AP54750 535 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 TBC1D8BQ0IIM8 1120 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 NMIQ13287 307 aaPredicted RBP8.02□□□□□ -1.13
UPF2-203ENST00000397053 USH1GQ495M9 461 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 HERC4Q5GLZ8 1057 aaPredicted RBP8.02□□□□□ -1.13
UPF2-203ENST00000397053 PPFIBP2Q8ND30 876 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 PRDM1O75626 825 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 PDE4DQ08499 809 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 TSTA3Q13630 321 aaPredicted RBP8.02□□□□□ -1.13
UPF2-203ENST00000397053 BSPRYQ5W0U4 402 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 CCDC24Q8N4L8 307 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 CCDC26Q8TAB7 109 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 TBC1D22AQ8WUA7 517 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 CHURC1Q8WUH1 139 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 NUF2Q9BZD4 464 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 ATP8B2P98198 1209 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 APOBRQ0VD83 1088 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 ANO6Q4KMQ2 910 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 DHX32Q7L7V1 743 aaKnown RBP8.02□□□□□ -1.13
UPF2-203ENST00000397053 DEPTORQ8TB45 409 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 PARD3BQ8TEW8 1205 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 SAMD15Q9P1V8 674 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 USTQ9Y2C2 406 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 RTL1A6NKG5 1358 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 DENND4BO75064 1496 aaPredicted RBP8.02□□□□□ -1.13
UPF2-203ENST00000397053 TNNI1P19237 187 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 IFRD2Q12894 506 aaPredicted RBP8.02□□□□□ -1.13
UPF2-203ENST00000397053 SEPT6Q14141 434 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 NOP9Q86U38 636 aaKnown RBP8.02□□□□□ -1.13
UPF2-203ENST00000397053 ZNF526Q8TF50 670 aaPredicted RBP8.02□□□□□ -1.13
UPF2-203ENST00000397053 NOC4LQ9BVI4 516 aaKnown RBP8.02□□□□□ -1.13
UPF2-203ENST00000397053 DNM3Q9UQ16 869 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 PPME1Q9Y570 386 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 NUB1Q9Y5A7 615 aa8.02□□□□□ -1.13
UPF2-203ENST00000397053 SDSP20132 328 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 TFCP2Q12800 502 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 LGSNQ5TDP6 509 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 GADL1Q6ZQY3 521 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 CCDC121Q6ZUS5 278 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 TAOK1Q7L7X3 1001 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 FLAD1Q8NFF5 587 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 MED10Q9BTT4 135 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 ACTN4O43707 911 aaKnown RBP8.01□□□□□ -1.13
UPF2-203ENST00000397053 ZEB2O60315 1214 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 UVSSAQ2YD98 709 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 ZNF569Q5MCW4 686 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 INTS8Q75QN2 995 aaKnown RBP8.01□□□□□ -1.13
UPF2-203ENST00000397053 BRAPQ7Z569 592 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 ZBTB8OSQ8IWT0 167 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 ANKRD35Q8N283 1001 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 PAXBP1Q9Y5B6 917 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 STK24Q9Y6E0 443 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 MRC2Q9UBG0 1479 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 CALUO43852 315 aaPredicted RBP8.01□□□□□ -1.13
UPF2-203ENST00000397053 ITGA6P23229 1130 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 PRIM1P49642 420 aaKnown RBP8.01□□□□□ -1.13
UPF2-203ENST00000397053 YWHAEP62258 255 aaKnown RBP8.01□□□□□ -1.13
UPF2-203ENST00000397053 MAP7Q14244 749 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 RBBP5Q15291 538 aaKnown RBP8.01□□□□□ -1.13
UPF2-203ENST00000397053 RPS6KA2Q15349 733 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 PUM3Q15397 648 aaKnown RBP8.01□□□□□ -1.13
UPF2-203ENST00000397053 KIAA1841Q6NSI8 718 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 MYCT1Q8N699 235 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 STMN2Q93045 179 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 DNAJC25Q9H1X3 360 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 NSD2O96028 1365 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 CSPG5O95196 566 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 MYCP01106 439 aaPredicted RBP8.01□□□□□ -1.13
UPF2-203ENST00000397053 CNNM4Q6P4Q7 775 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 CCDC186Q7Z3E2 898 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 SNX29Q8TEQ0 813 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 CHMP6Q96FZ7 201 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 C14orf93Q9H972 538 aaKnown RBP8.01□□□□□ -1.13
UPF2-203ENST00000397053 LZTFL1Q9NQ48 299 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 ZNF277Q9NRM2 450 aaPredicted RBP8.01□□□□□ -1.13
UPF2-203ENST00000397053 CTTNBP2NLQ9P2B4 639 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 LRWD1Q9UFC0 647 aa8.01□□□□□ -1.13
UPF2-203ENST00000397053 KIF21BO75037 1637 aa8□□□□□ -1.13
UPF2-203ENST00000397053 TESPA1A2RU30 521 aaPredicted RBP8□□□□□ -1.13
UPF2-203ENST00000397053 CIB2O75838 187 aa8□□□□□ -1.13
UPF2-203ENST00000397053 IVLP07476 585 aa8□□□□□ -1.13
UPF2-203ENST00000397053 OTUD6AQ7L8S5 288 aa8□□□□□ -1.13
UPF2-203ENST00000397053 DPP9Q86TI2 863 aa8□□□□□ -1.13
UPF2-203ENST00000397053 SKA2Q8WVK7 121 aaPredicted RBP8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms