RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 XDHP47989 1333 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 ATP2B4P23634 1241 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 TIMM10P62072 90 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 FAM193AP78312 1265 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 HDLBPQ00341 1268 aaKnown RBP6.26□□□□□ -1.41
VPS41-203ENST00000395969 ME3Q16798 604 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 METTL16Q86W50 562 aaKnown RBP6.26□□□□□ -1.41
VPS41-203ENST00000395969 TMTC2Q8N394 836 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 ZNF594Q96JF6 807 aaPredicted RBP6.26□□□□□ -1.41
VPS41-203ENST00000395969 FAM84BQ96KN1 310 aaPredicted RBP6.26□□□□□ -1.41
VPS41-203ENST00000395969 SETDB2Q96T68 719 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 KCNF1Q9H3M0 494 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 GNL3LQ9NVN8 582 aaKnown RBP6.26□□□□□ -1.41
VPS41-203ENST00000395969 USP25Q9UHP3 1055 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 CCDC66A2RUB6 948 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 TPM3P06753 285 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 ZAP70P43403 619 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 RPS8P62241 208 aaKnown RBP6.26□□□□□ -1.41
VPS41-203ENST00000395969 MAP3K12Q12852 859 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 TERF2Q15554 542 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 CCDC178Q5BJE1 867 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 DNAJC2Q99543 621 aaKnown RBP6.26□□□□□ -1.41
VPS41-203ENST00000395969 NOL10Q9BSC4 688 aaKnown RBP6.26□□□□□ -1.41
VPS41-203ENST00000395969 ATP8A2Q9NTI2 1148 aa6.26□□□□□ -1.41
VPS41-203ENST00000395969 PIP4K2AP48426 406 aaPredicted RBP6.25□□□□□ -1.41
VPS41-203ENST00000395969 CHAF1AQ13111 956 aaPredicted RBP6.25□□□□□ -1.41
VPS41-203ENST00000395969 NFIXQ14938 502 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 SPTY2D1Q68D10 685 aaPredicted RBP6.25□□□□□ -1.41
VPS41-203ENST00000395969 PRPF40BQ6NWY9 871 aaKnown RBP6.25□□□□□ -1.41
VPS41-203ENST00000395969 IGDCC4Q8TDY8 1250 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 NLRP3Q96P20 1036 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 KRT23Q9C075 422 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 TMX1Q9H3N1 280 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 BCCIPQ9P287 314 aaKnown RBP eCLIP6.25□□□□□ -1.41
VPS41-203ENST00000395969 TBC1D2BQ9UPU7 963 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 HPS5Q9UPZ3 1129 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 UNCXA6NJT0 531 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 GSG1L2A8MUP6 293 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 SH2B2O14492 632 aaPredicted RBP6.25□□□□□ -1.41
VPS41-203ENST00000395969 F13A1P00488 732 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 CASTP20810 708 aaKnown RBP6.25□□□□□ -1.41
VPS41-203ENST00000395969 ADD1P35611 737 aaKnown RBP6.25□□□□□ -1.41
VPS41-203ENST00000395969 PHKA1P46020 1223 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 ANTXR2P58335 489 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 IRX3P78415 501 aaPredicted RBP6.25□□□□□ -1.41
VPS41-203ENST00000395969 SEMA3FQ13275 785 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 IMMTQ16891 758 aaKnown RBP6.25□□□□□ -1.41
VPS41-203ENST00000395969 CC2D2BQ6DHV5 1058 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 PRR5LQ6MZQ0 368 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 CCDC125Q86Z20 511 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 QTRT2Q9H974 415 aaKnown RBP6.25□□□□□ -1.41
VPS41-203ENST00000395969 PYCARDQ9ULZ3 195 aa6.25□□□□□ -1.41
VPS41-203ENST00000395969 BAZ2AQ9UIF9 1905 aaKnown RBP6.25□□□□□ -1.41
VPS41-203ENST00000395969 GOLIM4O00461 696 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 GPAA1O43292 621 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 CTDNEP1O95476 244 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 FGAP02671 866 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 SEC23AQ15436 765 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 C3orf67Q6ZVT6 689 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 AMIGO3Q86WK7 504 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 NLGN1Q8N2Q7 840 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 NCOA7Q8NI08 942 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 WDR66Q8TBY9 1149 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 ZNF384Q8TF68 577 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 JAKMIP1Q96N16 626 aaKnown RBP6.24□□□□□ -1.41
VPS41-203ENST00000395969 FUCA2Q9BTY2 467 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 TRIM34Q9BYJ4 488 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 SIL1Q9H173 461 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 PARP14Q460N5 1801 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 STX6O43752 255 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 ZPR1O75312 459 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 RESTQ13127 1097 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 CREBRFQ8IUR6 639 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 NSUN7Q8NE18 718 aaKnown RBP6.24□□□□□ -1.41
VPS41-203ENST00000395969 KIF18AQ8NI77 898 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 NSUN4Q96CB9 384 aaKnown RBP6.24□□□□□ -1.41
VPS41-203ENST00000395969 TIGD1Q96MW7 591 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 PUS7LQ9H0K6 701 aaKnown RBP6.24□□□□□ -1.41
VPS41-203ENST00000395969 RNF41Q9H4P4 317 aaPredicted RBP6.24□□□□□ -1.41
VPS41-203ENST00000395969 CNNM1Q9NRU3 951 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 SLX4Q8IY92 1834 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 DHX16O60231 1041 aaKnown RBP6.24□□□□□ -1.41
VPS41-203ENST00000395969 ZMYND10O75800 440 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 CAVIN2O95810 425 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 SYT1P21579 422 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 PDIA3P30101 505 aaKnown RBP6.24□□□□□ -1.41
VPS41-203ENST00000395969 GSTO1P78417 241 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 NTRK3Q16288 839 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 FOXD4L6Q3SYB3 417 aaPredicted RBP6.24□□□□□ -1.41
VPS41-203ENST00000395969 CCDC183Q5T5S1 534 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 FOXD4L3Q6VB84 417 aaPredicted RBP6.24□□□□□ -1.41
VPS41-203ENST00000395969 SYNE4Q8N205 404 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 TBC1D22AQ8WUA7 517 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 C7orf43Q8WVR3 580 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 RBM17Q96I25 401 aaKnown RBP6.24□□□□□ -1.41
VPS41-203ENST00000395969 CAMKK2Q96RR4 588 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 EPB41L4AQ9HCS5 686 aaPredicted RBP6.24□□□□□ -1.41
VPS41-203ENST00000395969 ATP6V0A2Q9Y487 856 aa6.24□□□□□ -1.41
VPS41-203ENST00000395969 ATRNL1Q5VV63 1379 aa6.23□□□□□ -1.41
VPS41-203ENST00000395969 ZNF532Q9HCE3 1301 aa6.23□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms