RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 FAM47AQ5JRC9 791 aa12.57□□□□□ -0.4
NEDD9-201ENST00000379433 MB21D2Q8IYB1 491 aaPredicted RBP12.57□□□□□ -0.4
NEDD9-201ENST00000379433 USP28Q96RU2 1077 aa12.57□□□□□ -0.4
NEDD9-201ENST00000379433 SLC12A7Q9Y666 1083 aa12.57□□□□□ -0.4
NEDD9-201ENST00000379433 TCRBV5S4A2TA0A5A2 114 aa12.56□□□□□ -0.4
NEDD9-201ENST00000379433 GOLGA8AA7E2F4 631 aa12.56□□□□□ -0.4
NEDD9-201ENST00000379433 ISM2Q6H9L7 571 aa12.56□□□□□ -0.4
NEDD9-201ENST00000379433 DZIP1Q86YF9 867 aaKnown RBP12.56□□□□□ -0.4
NEDD9-201ENST00000379433 ANGEL1Q9UNK9 670 aaKnown RBP12.56□□□□□ -0.4
NEDD9-201ENST00000379433 TACC3Q9Y6A5 838 aa12.56□□□□□ -0.4
NEDD9-201ENST00000379433 NMT2O60551 498 aa12.56□□□□□ -0.4
NEDD9-201ENST00000379433 FDPSP14324 419 aaKnown RBP12.56□□□□□ -0.4
NEDD9-201ENST00000379433 CDC27P30260 824 aa12.56□□□□□ -0.4
NEDD9-201ENST00000379433 ZNF445P59923 1031 aa12.56□□□□□ -0.4
NEDD9-201ENST00000379433 CCDC183Q5T5S1 534 aa12.56□□□□□ -0.4
NEDD9-201ENST00000379433 NYXQ9GZU5 481 aa12.56□□□□□ -0.4
NEDD9-201ENST00000379433 PAPPAQ13219 1627 aa12.56□□□□□ -0.4
NEDD9-201ENST00000379433 USP17L12C9JPN9 530 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 USP17L21D6R901 530 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 ZBTB43O43298 467 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 CYP2D6P10635 497 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 UBAC1Q9BSL1 405 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 TNMDQ9H2S6 317 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 COL4A1P02462 1669 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.55□□□□□ -0.4
NEDD9-201ENST00000379433 ERICH2A1L162 156 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 SYNE3Q6ZMZ3 975 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 SPC24Q8NBT2 197 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 ZNF804BA4D1E1 1349 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 MECOMQ03112 1051 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 CSPP1Q1MSJ5 1256 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 KRT27Q7Z3Y8 459 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 PIK3R5Q8WYR1 880 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 ALG1Q9BT22 464 aa12.55□□□□□ -0.4
NEDD9-201ENST00000379433 SAP30BPQ9UHR5 308 aaKnown RBP12.55□□□□□ -0.4
NEDD9-201ENST00000379433 PGBD1Q96JS3 809 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 NUP62CLQ9H1M0 184 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 KCNJ14Q9UNX9 436 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 HPS5Q9UPZ3 1129 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 CARMIL3Q8ND23 1372 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 UFL1O94874 794 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 GRIK5Q16478 980 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 AKNAD1Q5T1N1 836 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 TMCO4Q5TGY1 634 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 ZBTB9Q96C00 473 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 KIF3AQ9Y496 699 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 A0A1B0GVL5 298 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 APBA3O96018 575 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 SERPINB2P05120 415 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 HMGN5P82970 282 aaKnown RBP12.54□□□□□ -0.4
NEDD9-201ENST00000379433 RESTQ13127 1097 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 STK38Q15208 465 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 SPECC1Q5M775 1068 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 APOA5Q6Q788 366 aa12.54□□□□□ -0.4
NEDD9-201ENST00000379433 SCAND2PQ9GZW5 306 aaPredicted RBP12.54□□□□□ -0.4
NEDD9-201ENST00000379433 PPARAQ07869 468 aa12.53□□□□□ -0.4
NEDD9-201ENST00000379433 SF3B3Q15393 1217 aaKnown RBP12.53□□□□□ -0.4
NEDD9-201ENST00000379433 MCM9Q9NXL9 1143 aa12.53□□□□□ -0.4
NEDD9-201ENST00000379433 DHX16O60231 1041 aaKnown RBP12.53□□□□□ -0.4
NEDD9-201ENST00000379433 GUCY1A2P33402 732 aa12.53□□□□□ -0.4
NEDD9-201ENST00000379433 WTAPQ15007 396 aa12.53□□□□□ -0.4
NEDD9-201ENST00000379433 PRR5LQ6MZQ0 368 aa12.53□□□□□ -0.4
NEDD9-201ENST00000379433 ILDR1Q86SU0 546 aaPredicted RBP12.53□□□□□ -0.4
NEDD9-201ENST00000379433 ZNF274Q96GC6 653 aaPredicted RBP12.53□□□□□ -0.4
NEDD9-201ENST00000379433 CLIC4Q9Y696 253 aa12.53□□□□□ -0.4
NEDD9-201ENST00000379433 RFX7Q2KHR2 1363 aa12.53□□□□□ -0.4
NEDD9-201ENST00000379433 BIN1O00499 593 aa12.52□□□□□ -0.4
NEDD9-201ENST00000379433 IARSP41252 1262 aaKnown RBP12.52□□□□□ -0.4
NEDD9-201ENST00000379433 UBE4AQ14139 1066 aa12.52□□□□□ -0.4
NEDD9-201ENST00000379433 TAF3Q5VWG9 929 aa12.52□□□□□ -0.4
NEDD9-201ENST00000379433 CCAR1Q8IX12 1150 aaKnown RBP12.52□□□□□ -0.4
NEDD9-201ENST00000379433 CEP120Q8N960 986 aa12.52□□□□□ -0.4
NEDD9-201ENST00000379433 ISY1Q9ULR0 285 aaKnown RBP12.52□□□□□ -0.4
NEDD9-201ENST00000379433 CNTNAP4Q9C0A0 1308 aa12.52□□□□□ -0.4
NEDD9-201ENST00000379433 USP5P45974 858 aa12.52□□□□□ -0.41
NEDD9-201ENST00000379433 LUZP1Q86V48 1076 aa12.52□□□□□ -0.41
NEDD9-201ENST00000379433 ZNF384Q8TF68 577 aa12.52□□□□□ -0.41
NEDD9-201ENST00000379433 KIF28PB7ZC32 967 aa12.52□□□□□ -0.41
NEDD9-201ENST00000379433 USP17L8P0C7I0 530 aa12.52□□□□□ -0.41
NEDD9-201ENST00000379433 SPATA31A6Q5VVP1 1343 aa12.52□□□□□ -0.41
NEDD9-201ENST00000379433 CPLX2Q6PUV4 134 aaKnown RBP12.52□□□□□ -0.41
NEDD9-201ENST00000379433 ESPNB1AK53 854 aa12.51□□□□□ -0.41
NEDD9-201ENST00000379433 G3V3G9 751 aa12.51□□□□□ -0.41
NEDD9-201ENST00000379433 SH2B2O14492 632 aaPredicted RBP12.51□□□□□ -0.41
NEDD9-201ENST00000379433 TRIM29Q14134 588 aa12.51□□□□□ -0.41
NEDD9-201ENST00000379433 SART3Q15020 963 aaKnown RBP12.51□□□□□ -0.41
NEDD9-201ENST00000379433 DCAF8Q5TAQ9 597 aa12.51□□□□□ -0.41
NEDD9-201ENST00000379433 DYNLL2Q96FJ2 89 aa12.51□□□□□ -0.41
NEDD9-201ENST00000379433 SDF4Q9BRK5 362 aa12.51□□□□□ -0.41
NEDD9-201ENST00000379433 CFAP45Q9UL16 551 aa12.51□□□□□ -0.41
NEDD9-201ENST00000379433 STK24Q9Y6E0 443 aa12.51□□□□□ -0.41
NEDD9-201ENST00000379433 RBM26Q5T8P6 1007 aaKnown RBP12.51□□□□□ -0.41
NEDD9-201ENST00000379433 FSIP1Q8NA03 581 aa12.51□□□□□ -0.41
NEDD9-201ENST00000379433 SMARCC2Q8TAQ2 1214 aa12.51□□□□□ -0.41
NEDD9-201ENST00000379433 SPEF2Q9C093 1822 aa12.51□□□□□ -0.41
NEDD9-201ENST00000379433 GYS1P13807 737 aa12.5□□□□□ -0.41
NEDD9-201ENST00000379433 MAP3K11Q16584 847 aa12.5□□□□□ -0.41
NEDD9-201ENST00000379433 MAPKAPK5Q8IW41 473 aa12.5□□□□□ -0.41
NEDD9-201ENST00000379433 SLC44A5Q8NCS7 719 aa12.5□□□□□ -0.41
NEDD9-201ENST00000379433 MXD3Q9BW11 206 aa12.5□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms