RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 KIFAP3Q92845 792 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 NUP58Q9BVL2 599 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 PANK2Q9BZ23 570 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 SLC24A3Q9HC58 644 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 TBC1D23Q9NUY8 699 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 CD2APQ9Y5K6 639 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 SART1O43290 800 aaKnown RBP9.69□□□□□ -0.86
LIG3-202ENST00000378526 MUM1L1Q5H9M0 696 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 SLC30A9Q6PML9 568 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 ZNF653Q96CK0 615 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 TYW1Q9NV66 732 aaKnown RBP9.69□□□□□ -0.86
LIG3-202ENST00000378526 CARSP49589 748 aaKnown RBP9.69□□□□□ -0.86
LIG3-202ENST00000378526 FKBP4Q02790 459 aaKnown RBP eCLIP9.69□□□□□ -0.86
LIG3-202ENST00000378526 SLC44A4Q53GD3 710 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 LRRC8BQ6P9F7 803 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 HOOK2Q96ED9 719 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 CNNM1Q9NRU3 951 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 RTL1A6NKG5 1358 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 TBCAO75347 108 aaKnown RBP9.69□□□□□ -0.86
LIG3-202ENST00000378526 STX3Q13277 289 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 HORMAD1Q86X24 394 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 PNISRQ8TF01 805 aaKnown RBP9.69□□□□□ -0.86
LIG3-202ENST00000378526 PPWD1Q96BP3 646 aaKnown RBP9.69□□□□□ -0.86
LIG3-202ENST00000378526 STAMBPL1Q96FJ0 436 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 DDX41Q9UJV9 622 aaKnown RBP9.69□□□□□ -0.86
LIG3-202ENST00000378526 EXOC5O00471 708 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 MRPS27Q92552 414 aaKnown RBP9.69□□□□□ -0.86
LIG3-202ENST00000378526 TRIM15Q9C019 465 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 CNOT10Q9H9A5 744 aaKnown RBP9.69□□□□□ -0.86
LIG3-202ENST00000378526 CATIPQ7Z7H3 387 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 CFAP36Q96G28 342 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 TEX9Q8N6V9 391 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 TBC1D32Q96NH3 1257 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 SEPT3Q9UH03 358 aa9.69□□□□□ -0.86
LIG3-202ENST00000378526 E2F4Q16254 413 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 TMTC3Q6ZXV5 915 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 SNX29Q8TEQ0 813 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 BCL2L12Q9HB09 334 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 DEAF1O75398 565 aaPredicted RBP9.68□□□□□ -0.86
LIG3-202ENST00000378526 PMS1P54277 932 aaKnown RBP9.68□□□□□ -0.86
LIG3-202ENST00000378526 KARSQ15046 597 aaKnown RBP9.68□□□□□ -0.86
LIG3-202ENST00000378526 NONOQ15233 471 aaKnown RBP eCLIP9.68□□□□□ -0.86
LIG3-202ENST00000378526 AACSQ86V21 672 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 FAM204AQ9H8W3 233 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP9.68□□□□□ -0.86
LIG3-202ENST00000378526 GTPBP10A4D1E9 387 aaKnown RBP9.68□□□□□ -0.86
LIG3-202ENST00000378526 H0YC42 278 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 TEKT1Q969V4 418 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 AGTPBP1Q9UPW5 1226 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 CTNNA1P35221 906 aaKnown RBP9.68□□□□□ -0.86
LIG3-202ENST00000378526 STX1BP61266 288 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 INAQ16352 499 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 XPOTO43592 962 aaKnown RBP9.68□□□□□ -0.86
LIG3-202ENST00000378526 IFT88Q13099 833 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 MMEL1Q495T6 779 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 HS2ST1Q7LGA3 356 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 WDR75Q8IWA0 830 aaKnown RBP9.68□□□□□ -0.86
LIG3-202ENST00000378526 TTC1Q99614 292 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 ATP6V0A4Q9HBG4 840 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 ANKRD30BQ9BXX2 1392 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 SCYL3Q8IZE3 742 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 MBD2Q9UBB5 411 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 GMEB1Q9Y692 573 aa9.68□□□□□ -0.86
LIG3-202ENST00000378526 ARHGAP6O43182 974 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 CCT5P48643 541 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 LZICQ8WZA0 190 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 STAC3Q96MF2 364 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.67□□□□□ -0.86
LIG3-202ENST00000378526 GEMIN8Q9NWZ8 242 aaKnown RBP9.67□□□□□ -0.86
LIG3-202ENST00000378526 CFAP65Q6ZU64 1925 aaKnown RBP9.67□□□□□ -0.86
LIG3-202ENST00000378526 NKTRP30414 1462 aaKnown RBP9.67□□□□□ -0.86
LIG3-202ENST00000378526 LOC102724159A0A0B4J2E5 919 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 DTNBO60941 627 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 EFCAB14O75071 495 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 MAP3K10Q02779 954 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 PWP2Q15269 919 aaKnown RBP9.67□□□□□ -0.86
LIG3-202ENST00000378526 RRAGBQ5VZM2 374 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 SNX21Q969T3 373 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 CCDC169A6NNP5 214 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 MCM7P33993 719 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 KRR1Q13601 381 aaKnown RBP9.67□□□□□ -0.86
LIG3-202ENST00000378526 ISM2Q6H9L7 571 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 TRAF7Q6Q0C0 670 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 HDDC2Q7Z4H3 204 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 BBOF1Q8ND07 529 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 RFWD2Q8NHY2 731 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 KIF1BPQ96EK5 621 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 DCDC2Q9UHG0 476 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 RWDD3Q9Y3V2 267 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 FOXD1Q16676 465 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 GINS4Q9BRT9 223 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 S100A9P06702 114 aaKnown RBP9.67□□□□□ -0.86
LIG3-202ENST00000378526 POLD1P28340 1107 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 CEP55Q53EZ4 464 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 TADA2BQ86TJ2 420 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 ZC3H18Q86VM9 953 aaKnown RBP9.67□□□□□ -0.86
LIG3-202ENST00000378526 GAS2L2Q8NHY3 880 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 TCP11Q8WWU5 503 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 AIDAQ96BJ3 306 aa9.67□□□□□ -0.86
LIG3-202ENST00000378526 ZNF500O60304 480 aaPredicted RBP9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms