RNA–Protein interactions for RNA: ENST00000377861.4

PCDH9-201, Transcript of protocadherin 9, humanhuman

TSL 1 (best) BASIC

Gene PCDH9, Length 28,227 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9-201ENST00000377861 GOLGA8QA0A0J9YX86 632 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 GOLGA8OA6NCC3 632 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 GOLGA8NF8WBI6 632 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 NNTQ13423 1086 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 DTHD1Q6ZMT9 781 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 ARHGEF25Q86VW2 580 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 KIFAP3Q92845 792 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 RBM8AQ9Y5S9 174 aaKnown RBP5.55□□□□□ -1.52
PCDH9-201ENST00000377861 FLOT1O75955 427 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 SASH1O94885 1247 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 ZNF202O95125 648 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 ZNF662Q6ZS27 426 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 HAUS2Q9NVX0 235 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 COL15A1P39059 1388 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 DEUP1Q05D60 604 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 CCDC186Q7Z3E2 898 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 FAM76AQ8TAV0 307 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 STIM2Q9P246 746 aa5.55□□□□□ -1.52
PCDH9-201ENST00000377861 METAP2P50579 478 aaKnown RBP eCLIP5.55□□□□□ -1.52
PCDH9-201ENST00000377861 RAPGEF3O95398 923 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 PROSER2Q86WR7 435 aaPredicted RBP5.54□□□□□ -1.52
PCDH9-201ENST00000377861 SPDYCQ5MJ68 293 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 CDC23Q9UJX2 597 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 PODXLO00592 558 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 SPECC1Q5M775 1068 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 NFATC2IPQ8NCF5 419 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 HOXB6P17509 224 aaKnown RBP5.54□□□□□ -1.52
PCDH9-201ENST00000377861 MRPS25P82663 173 aaKnown RBP5.54□□□□□ -1.52
PCDH9-201ENST00000377861 TMEM67Q5HYA8 995 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 RGS12O14924 1447 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 NCOA3Q9Y6Q9 1424 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 PIP4K2CQ8TBX8 421 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 PPP1R12CQ9BZL4 782 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 RAB17Q9H0T7 212 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 PAG1Q9NWQ8 432 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 DENND2AQ9ULE3 1009 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 STK10O94804 968 aaKnown RBP5.54□□□□□ -1.52
PCDH9-201ENST00000377861 GCP02774 474 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 NECTIN1Q15223 517 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 KDM5BQ9UGL1 1544 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 WDR17Q8IZU2 1322 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 MAP2K1Q02750 393 aaPredicted RBP5.54□□□□□ -1.52
PCDH9-201ENST00000377861 GTF3C6Q969F1 213 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 IFIT3O14879 490 aaKnown RBP5.54□□□□□ -1.52
PCDH9-201ENST00000377861 MRVI1Q9Y6F6 885 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 RAD21O60216 631 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 VCX3BQ9H321 246 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 A0A1W2PQC6 194 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 TOMM70O94826 608 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 KCND2Q9NZV8 630 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 CCDC40Q4G0X9 1142 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 RNF26Q9BY78 433 aaPredicted RBP5.54□□□□□ -1.52
PCDH9-201ENST00000377861 SRPRBQ9Y5M8 271 aaKnown RBP5.54□□□□□ -1.52
PCDH9-201ENST00000377861 KRT79Q5XKE5 535 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 FAM71BQ8TC56 605 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 CCDC17Q96LX7 622 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 TYW1Q9NV66 732 aaKnown RBP5.54□□□□□ -1.52
PCDH9-201ENST00000377861 FLAD1Q8NFF5 587 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 SPATA24Q86W54 205 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 STK17AQ9UEE5 414 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 PVALEFA0A1B0GWK0 134 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 NEFHP12036 1026 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 CHMP3Q9Y3E7 222 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 SSR1P43307 286 aaKnown RBP5.54□□□□□ -1.52
PCDH9-201ENST00000377861 C8orf58Q8NAV2 365 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 PSMD1Q99460 953 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 FKBP4Q02790 459 aaKnown RBP eCLIP5.54□□□□□ -1.52
PCDH9-201ENST00000377861 DGKHQ86XP1 1220 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 DMTNQ08495 405 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 SLTMQ9NWH9 1034 aaKnown RBP eCLIP5.54□□□□□ -1.52
PCDH9-201ENST00000377861 CAPN2P17655 700 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 HS2ST1Q7LGA3 356 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 THEGQ9P2T0 379 aa5.54□□□□□ -1.52
PCDH9-201ENST00000377861 TFIP11Q9UBB9 837 aaKnown RBP5.54□□□□□ -1.52
PCDH9-201ENST00000377861 EYA2O00167 538 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 SMC1BQ8NDV3 1235 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 NAPGQ99747 312 aaPredicted RBP5.53□□□□□ -1.52
PCDH9-201ENST00000377861 RLBP1P12271 317 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 KCNA6P17658 529 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 GRAMD1AQ96CP6 724 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 TOMM22Q9NS69 142 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 IFNAR1P17181 557 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 ATP10DQ9P241 1426 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 ATP7BP35670 1465 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 USP31Q70CQ4 1352 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 CES2O00748 559 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 TPTE2Q6XPS3 522 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 NUP88Q99567 741 aaPredicted RBP5.53□□□□□ -1.52
PCDH9-201ENST00000377861 ATP6V0A2Q9Y487 856 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 CTNNBL1Q8WYA6 563 aaPredicted RBP5.53□□□□□ -1.52
PCDH9-201ENST00000377861 RBM5P52756 815 aaKnown RBP eCLIP5.53□□□□□ -1.52
PCDH9-201ENST00000377861 NCBP1Q09161 790 aaKnown RBP5.53□□□□□ -1.52
PCDH9-201ENST00000377861 DISP1Q96F81 1524 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 PAK2Q13177 524 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 DYDC1Q8WWB3 177 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 SETDB1Q15047 1291 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 RRAGBQ5VZM2 374 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 HSPA8P11142 646 aaKnown RBP5.53□□□□□ -1.52
PCDH9-201ENST00000377861 UBE4AQ14139 1066 aa5.53□□□□□ -1.52
PCDH9-201ENST00000377861 CCDC65Q8IXS2 484 aa5.53□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms