RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 MIGA2Q7L4E1 593 aa16.2■□□□□ 0.18
VPS28-202ENST00000377348 JMYQ8N9B5 988 aa16.2■□□□□ 0.18
VPS28-202ENST00000377348 CLMNQ96JQ2 1002 aa16.2■□□□□ 0.18
VPS28-202ENST00000377348 ZIC5Q96T25 663 aa16.2■□□□□ 0.18
VPS28-202ENST00000377348 GLRX3O76003 335 aaKnown RBP16.19■□□□□ 0.18
VPS28-202ENST00000377348 ADD2P35612 726 aa16.19■□□□□ 0.18
VPS28-202ENST00000377348 IREB2P48200 963 aaKnown RBP16.19■□□□□ 0.18
VPS28-202ENST00000377348 PDE1AP54750 535 aa16.19■□□□□ 0.18
VPS28-202ENST00000377348 RASAL3Q86YV0 1011 aa16.19■□□□□ 0.18
VPS28-202ENST00000377348 MAPKAPK5Q8IW41 473 aa16.19■□□□□ 0.18
VPS28-202ENST00000377348 ZSCAN29Q8IWY8 852 aaPredicted RBP16.19■□□□□ 0.18
VPS28-202ENST00000377348 TGFBRAP1Q8WUH2 860 aa16.19■□□□□ 0.18
VPS28-202ENST00000377348 CSRNP1Q96S65 589 aa16.19■□□□□ 0.18
VPS28-202ENST00000377348 RIOK1Q9BRS2 568 aaKnown RBP16.19■□□□□ 0.18
VPS28-202ENST00000377348 SLC10A3P09131 477 aa16.18■□□□□ 0.18
VPS28-202ENST00000377348 PLCG2P16885 1265 aa16.18■□□□□ 0.18
VPS28-202ENST00000377348 KBTBD3Q8NAB2 608 aa16.18■□□□□ 0.18
VPS28-202ENST00000377348 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.18■□□□□ 0.182e-7■■■■□ 23.7
VPS28-202ENST00000377348 OSBPL5Q9H0X9 879 aaPredicted RBP16.18■□□□□ 0.18
VPS28-202ENST00000377348 STAP2Q9UGK3 403 aa16.18■□□□□ 0.18
VPS28-202ENST00000377348 ATRNL1Q5VV63 1379 aa16.17■□□□□ 0.18
VPS28-202ENST00000377348 MAGEB6P1A0A0J9YX57 407 aa16.17■□□□□ 0.18
VPS28-202ENST00000377348 NPM3O75607 178 aaKnown RBP16.17■□□□□ 0.18
VPS28-202ENST00000377348 CENPBP07199 599 aaPredicted RBP16.17■□□□□ 0.18
VPS28-202ENST00000377348 MKRN3Q13064 507 aaKnown RBP16.17■□□□□ 0.18
VPS28-202ENST00000377348 TMED8Q6PL24 325 aaPredicted RBP16.17■□□□□ 0.18
VPS28-202ENST00000377348 CCDC102AQ96A19 550 aa16.17■□□□□ 0.18
VPS28-202ENST00000377348 FLT1P17948 1338 aa16.17■□□□□ 0.18
VPS28-202ENST00000377348 AK9Q5TCS8 1911 aa16.16■□□□□ 0.18
VPS28-202ENST00000377348 SLC4A8Q2Y0W8 1093 aa16.16■□□□□ 0.18
VPS28-202ENST00000377348 DCAF15Q66K64 600 aa16.16■□□□□ 0.18
VPS28-202ENST00000377348 PPP1R3FQ6ZSY5 799 aaPredicted RBP16.16■□□□□ 0.18
VPS28-202ENST00000377348 PLEKHM2Q8IWE5 1019 aa16.16■□□□□ 0.18
VPS28-202ENST00000377348 LCORLQ8N3X6 602 aa16.16■□□□□ 0.18
VPS28-202ENST00000377348 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.16■□□□□ 0.187e-9■□□□□ 10.3
VPS28-202ENST00000377348 HOOK2Q96ED9 719 aa16.16■□□□□ 0.18
VPS28-202ENST00000377348 WRNIP1Q96S55 665 aa16.16■□□□□ 0.18
VPS28-202ENST00000377348 ARMT1Q9H993 441 aa16.16■□□□□ 0.18
VPS28-202ENST00000377348 SAP30BPQ9UHR5 308 aaKnown RBP16.16■□□□□ 0.18
VPS28-202ENST00000377348 OTOFQ9HC10 1997 aa16.16■□□□□ 0.18
VPS28-202ENST00000377348 MBD4O95243 580 aa16.15■□□□□ 0.18
VPS28-202ENST00000377348 PDE4AP27815 886 aa16.15■□□□□ 0.18
VPS28-202ENST00000377348 USP5P45974 858 aa16.15■□□□□ 0.18
VPS28-202ENST00000377348 MAP3K9P80192 1104 aa16.15■□□□□ 0.18
VPS28-202ENST00000377348 NOGQ13253 232 aa16.15■□□□□ 0.18
VPS28-202ENST00000377348 VGLL4Q14135 290 aa16.15■□□□□ 0.18
VPS28-202ENST00000377348 UBE3CQ15386 1083 aa16.15■□□□□ 0.18
VPS28-202ENST00000377348 ANKRD13AQ8IZ07 590 aa16.15■□□□□ 0.18
VPS28-202ENST00000377348 ZKSCAN4Q969J2 545 aaPredicted RBP16.15■□□□□ 0.18
VPS28-202ENST00000377348 SLC10A4Q96EP9 437 aa16.15■□□□□ 0.18
VPS28-202ENST00000377348 ZNF341Q9BYN7 854 aa16.15■□□□□ 0.18
VPS28-202ENST00000377348 ELP3Q9H9T3 547 aa16.15■□□□□ 0.18
VPS28-202ENST00000377348 THSD7BQ9C0I4 1608 aa16.15■□□□□ 0.18
VPS28-202ENST00000377348 CDK5RAP2Q96SN8 1893 aa16.14■□□□□ 0.17
VPS28-202ENST00000377348 FAM196BA6NMK8 535 aa16.14■□□□□ 0.17
VPS28-202ENST00000377348 INPP5BP32019 993 aa16.14■□□□□ 0.17
VPS28-202ENST00000377348 KIF23Q02241 960 aaPredicted RBP16.14■□□□□ 0.17
VPS28-202ENST00000377348 ZSCAN25Q6NSZ9 544 aa16.14■□□□□ 0.17
VPS28-202ENST00000377348 CNKSR2Q8WXI2 1034 aa16.14■□□□□ 0.17
VPS28-202ENST00000377348 FSD1Q9BTV5 496 aa16.14■□□□□ 0.17
VPS28-202ENST00000377348 PUS7LQ9H0K6 701 aaKnown RBP16.14■□□□□ 0.17
VPS28-202ENST00000377348 PALD1Q9ULE6 856 aa16.14■□□□□ 0.17
VPS28-202ENST00000377348 RNF113AO15541 343 aaKnown RBP16.13■□□□□ 0.17
VPS28-202ENST00000377348 PRKAB2O43741 272 aa16.13■□□□□ 0.17
VPS28-202ENST00000377348 HSPA1AP0DMV8 641 aaKnown RBP16.13■□□□□ 0.17
VPS28-202ENST00000377348 HSPA1BP0DMV9 641 aaKnown RBP16.13■□□□□ 0.17
VPS28-202ENST00000377348 GJA5P36382 358 aa16.13■□□□□ 0.17
VPS28-202ENST00000377348 MAP2K2P36507 400 aa16.13■□□□□ 0.17
VPS28-202ENST00000377348 SPRYD7Q5W111 196 aa16.13■□□□□ 0.17
VPS28-202ENST00000377348 CERS3Q8IU89 383 aa16.13■□□□□ 0.17
VPS28-202ENST00000377348 SDR42E1Q8WUS8 393 aa16.13■□□□□ 0.17
VPS28-202ENST00000377348 WNK4Q96J92 1243 aa16.13■□□□□ 0.17
VPS28-202ENST00000377348 CRNKL1Q9BZJ0 848 aaKnown RBP16.13■□□□□ 0.17
VPS28-202ENST00000377348 COL2A1P02458 1487 aaPredicted RBP16.13■□□□□ 0.17
VPS28-202ENST00000377348 MYH7P12883 1935 aa16.13■□□□□ 0.17
VPS28-202ENST00000377348 FOCADQ5VW36 1801 aa16.12■□□□□ 0.17
VPS28-202ENST00000377348 OSBP2Q969R2 916 aa16.12■□□□□ 0.17
VPS28-202ENST00000377348 ZNF112Q9UJU3 913 aa16.12■□□□□ 0.17
VPS28-202ENST00000377348 CSADQ9Y600 493 aa16.12■□□□□ 0.17
VPS28-202ENST00000377348 SNCAIPQ9Y6H5 919 aa16.12■□□□□ 0.17
VPS28-202ENST00000377348 UNCXA6NJT0 531 aa16.11■□□□□ 0.17
VPS28-202ENST00000377348 PHF20L1A8MW92 1017 aa16.11■□□□□ 0.17
VPS28-202ENST00000377348 TRIM6-TRIM34B2RNG4 842 aa16.11■□□□□ 0.17
VPS28-202ENST00000377348 M0R2C6 588 aa16.11■□□□□ 0.17
VPS28-202ENST00000377348 NEFLP07196 543 aa16.11■□□□□ 0.17
VPS28-202ENST00000377348 MAP3K10Q02779 954 aa16.11■□□□□ 0.17
VPS28-202ENST00000377348 APPBP2Q92624 585 aa16.11■□□□□ 0.17
VPS28-202ENST00000377348 AIDAQ96BJ3 306 aa16.11■□□□□ 0.17
VPS28-202ENST00000377348 OPTNQ96CV9 577 aa16.11■□□□□ 0.17
VPS28-202ENST00000377348 SEC62Q99442 399 aaKnown RBP16.11■□□□□ 0.17
VPS28-202ENST00000377348 DHX36Q9H2U1 1008 aaKnown RBP16.11■□□□□ 0.17
VPS28-202ENST00000377348 OSBPL3Q9H4L5 887 aa16.11■□□□□ 0.17
VPS28-202ENST00000377348 WBP1LQ9NX94 342 aa16.11■□□□□ 0.17
VPS28-202ENST00000377348 TBC1D12O60347 775 aa16.1■□□□□ 0.17
VPS28-202ENST00000377348 ZFYP08048 801 aaPredicted RBP16.1■□□□□ 0.17
VPS28-202ENST00000377348 MAP2K1Q02750 393 aaPredicted RBP16.1■□□□□ 0.17
VPS28-202ENST00000377348 EVX2Q03828 476 aa16.1■□□□□ 0.17
VPS28-202ENST00000377348 RRP1BQ14684 758 aaKnown RBP16.1■□□□□ 0.17
VPS28-202ENST00000377348 EVI5LQ96CN4 794 aa16.1■□□□□ 0.17
VPS28-202ENST00000377348 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms