RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ST5P78524 1137 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 TRPC3Q13507 836 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 ZNF530Q6P9A1 599 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-202ENST00000375405 INTS8Q75QN2 995 aaKnown RBP5.16□□□□□ -1.58
SCN1A-202ENST00000375405 ANKRD49Q8WVL7 239 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 SMG6Q86US8 1419 aaKnown RBP5.16□□□□□ -1.58
SCN1A-202ENST00000375405 ST20-MTHFSA0A0A6YYL1 179 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 YEATS4O95619 227 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 GNAI3P08754 354 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 ZNF18P17022 549 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 SLC9A1P19634 815 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 RIPK4P57078 832 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 AMPD3Q01432 767 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 KIAA1841Q6NSI8 718 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 RUFY4Q6ZNE9 571 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 PLEKHM3Q6ZWE6 761 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 FASTKD5Q7L8L6 764 aaKnown RBP5.16□□□□□ -1.58
SCN1A-202ENST00000375405 CTAGE3PQ8IX95 158 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 PPP4R1Q8TF05 950 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 PHF21AQ96BD5 680 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 PICK1Q9NRD5 415 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 KIAA1468Q9P260 1216 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 PLEKHG3A1L390 1219 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 MARCKSP29966 332 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-202ENST00000375405 SCYL2Q6P3W7 929 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 TEX11Q8IYF3 940 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 HELBQ8NG08 1087 aaPredicted RBP5.16□□□□□ -1.58
SCN1A-202ENST00000375405 GCNAQ96QF7 691 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 NAPBQ9H115 298 aa5.16□□□□□ -1.58
SCN1A-202ENST00000375405 TLDC2A0PJX2 215 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 MYL1P05976 194 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 MCM7P33993 719 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 KRT83P78385 493 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 PPARDQ03181 441 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 DUSP27Q5VZP5 1158 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 NLRP13Q86W25 1043 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 ARHGAP24Q8N264 748 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 EIF2AQ9BY44 585 aaKnown RBP5.15□□□□□ -1.58
SCN1A-202ENST00000375405 ZSWIM4Q9H7M6 989 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 RPRD1BQ9NQG5 326 aaKnown RBP5.15□□□□□ -1.58
SCN1A-202ENST00000375405 GIGYF1O75420 1035 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-202ENST00000375405 ATP11AP98196 1134 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 PPP2R5EQ16537 467 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 ZSCAN30Q86W11 494 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 HACE1Q8IYU2 909 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 SAMSN1Q9NSI8 373 aaKnown RBP5.15□□□□□ -1.58
SCN1A-202ENST00000375405 SLC8A2Q9UPR5 921 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 H3BRJ5 948 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 ZSCAN9O15535 394 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-202ENST00000375405 DNAJC8O75937 253 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-202ENST00000375405 PPP2R3AQ06190 1150 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 KRT39Q6A163 491 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 TRIM59Q8IWR1 403 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 ATL2Q8NHH9 583 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 B4GALNT2Q8NHY0 566 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 JAKMIP2Q96AA8 810 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 ZNF830Q96NB3 372 aaPredicted RBP5.15□□□□□ -1.58
SCN1A-202ENST00000375405 TEX12Q9BXU0 123 aa5.15□□□□□ -1.58
SCN1A-202ENST00000375405 COPG1Q9Y678 874 aaKnown RBP5.15□□□□□ -1.58
SCN1A-202ENST00000375405 KRT19P08727 400 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 LARP1BQ659C4 914 aaKnown RBP5.15□□□□□ -1.59
SCN1A-202ENST00000375405 CCDC102BQ68D86 513 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 PROSER2Q86WR7 435 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-202ENST00000375405 GOLGA5Q8TBA6 731 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 PAGR1Q9BTK6 254 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 MCM8Q9UJA3 840 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 ZBED9Q6R2W3 1325 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 GTF2A1P52655 376 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-202ENST00000375405 MRPL28Q13084 256 aaKnown RBP5.15□□□□□ -1.59
SCN1A-202ENST00000375405 NBPF8Q3BBV2 869 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 NBPF14Q5TI25 921 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 ISM2Q6H9L7 571 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 KRT74Q7RTS7 529 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 ARFGAP2Q8N6H7 521 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 POMGNT2Q8NAT1 580 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 CCDC124Q96CT7 223 aaKnown RBP5.15□□□□□ -1.59
SCN1A-202ENST00000375405 ATP6V0A4Q9HBG4 840 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 MAN1C1Q9NR34 630 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 HACD3Q9P035 362 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 WRNQ14191 1432 aaPredicted RBP eCLIP5.15□□□□□ -1.59
SCN1A-202ENST00000375405 TADA3O75528 432 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 PUM3Q15397 648 aaKnown RBP5.15□□□□□ -1.59
SCN1A-202ENST00000375405 MMEL1Q495T6 779 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 NLRP14Q86W24 1093 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 UNC45BQ8IWX7 931 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 POLR3CQ9BUI4 534 aaPredicted RBP5.15□□□□□ -1.59
SCN1A-202ENST00000375405 GALNT8Q9NY28 637 aa5.15□□□□□ -1.59
SCN1A-202ENST00000375405 TFIP11Q9UBB9 837 aaKnown RBP5.15□□□□□ -1.59
SCN1A-202ENST00000375405 PPIEQ9UNP9 301 aaKnown RBP5.15□□□□□ -1.59
SCN1A-202ENST00000375405 ARHGAP10A1A4S6 786 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 PFDN6O15212 129 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 PRR29P0C7W0 189 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 TOP1P11387 765 aaKnown RBP5.14□□□□□ -1.59
SCN1A-202ENST00000375405 KRT17Q04695 432 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 SF3B3Q15393 1217 aaKnown RBP5.14□□□□□ -1.59
SCN1A-202ENST00000375405 GJC2Q5T442 439 aaPredicted RBP5.14□□□□□ -1.59
SCN1A-202ENST00000375405 CATIPQ7Z7H3 387 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 ARHGAP18Q8N392 663 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 FNBP1Q96RU3 617 aa5.14□□□□□ -1.59
SCN1A-202ENST00000375405 SMYD2Q9NRG4 433 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms