RNA–Protein interactions for RNA: ENST00000372246.7

ATG4A-204, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4A, Length 2,501 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-204ENST00000372246 CDC25AP30304 524 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 STX17P56962 302 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 GSDMDP57764 484 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 LONRF2Q1L5Z9 754 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 LRRFIP1Q32MZ4 808 aaKnown RBP6.24□□□□□ -1.41
ATG4A-204ENST00000372246 TTC19Q6DKK2 380 aaPredicted RBP6.24□□□□□ -1.41
ATG4A-204ENST00000372246 LMOD2Q6P5Q4 547 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 RIC3Q7Z5B4 369 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 CREBRFQ8IUR6 639 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 GSPT2Q8IYD1 628 aaKnown RBP6.24□□□□□ -1.41
ATG4A-204ENST00000372246 CMTR1Q8N1G2 835 aaKnown RBP6.24□□□□□ -1.41
ATG4A-204ENST00000372246 RASSF4Q9H2L5 321 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 ZSCAN16Q9H4T2 348 aaPredicted RBP6.24□□□□□ -1.41
ATG4A-204ENST00000372246 SAMSN1Q9NSI8 373 aaKnown RBP6.24□□□□□ -1.41
ATG4A-204ENST00000372246 C3P01024 1663 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 NRKQ7Z2Y5 1582 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 KDRP35968 1356 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 M0R2C6 588 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 SPTLC2O15270 562 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 TEX33O43247 280 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 IBSPP21815 317 aaPredicted RBP6.24□□□□□ -1.41
ATG4A-204ENST00000372246 CASQ1P31415 396 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 NOP2P46087 812 aaKnown RBP6.24□□□□□ -1.41
ATG4A-204ENST00000372246 SHC4Q6S5L8 630 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 KSR2Q6VAB6 950 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 EP400NLQ6ZTU2 488 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 SMYD4Q8IYR2 804 aaPredicted RBP6.24□□□□□ -1.41
ATG4A-204ENST00000372246 MED15Q96RN5 788 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 CDC5LQ99459 802 aaKnown RBP6.24□□□□□ -1.41
ATG4A-204ENST00000372246 TEX13AQ9BXU3 409 aaPredicted RBP6.24□□□□□ -1.41
ATG4A-204ENST00000372246 TRIM10Q9UDY6 481 aa6.24□□□□□ -1.41
ATG4A-204ENST00000372246 SBNO1A3KN83 1393 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 MAP3K7O43318 606 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 EPB41L2O43491 1005 aaKnown RBP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 GIGYF1O75420 1035 aaPredicted RBP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 TOP1P11387 765 aaKnown RBP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 TSGA10IPQ3SY00 556 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 MCMDC2Q4G0Z9 681 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 TNNI3KQ59H18 835 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 AXDND1Q5T1B0 1012 aaPredicted RBP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 USPL1Q5W0Q7 1092 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 KLHL10Q6JEL2 608 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 USP49Q70CQ1 688 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 COPS6Q7L5N1 327 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 DHX32Q7L7V1 743 aaKnown RBP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 GPATCH11Q8N954 259 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 XAGE3Q8WTP9 111 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 STAMQ92783 540 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 KIFC2Q96AC6 838 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 UBXN6Q9BZV1 441 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 NAT10Q9H0A0 1025 aaKnown RBP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 ANKZF1Q9H8Y5 726 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 ABCB6Q9NP58 842 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 FPGT-TNNI3KV9GXZ4 949 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 SETD1AO15047 1707 aaKnown RBP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 KLF18A0A0U1RQI7 1052 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 GOLGA8BA8MQT2 603 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 CTAGE5O15320 804 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 HSPD1P10809 573 aaKnown RBP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 MLLT3P42568 568 aaPredicted RBP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 NLRP12P59046 1061 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 FKBP4Q02790 459 aaKnown RBP eCLIP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 MYSM1Q5VVJ2 828 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 ADALQ6DHV7 355 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 NCAPH2Q6IBW4 605 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 RAD9BQ6WBX8 426 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 SRLQ86TD4 932 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 METTL16Q86W50 562 aaKnown RBP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 TC2NQ8N9U0 490 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 CCDC150Q8NCX0 1101 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 ACRBPQ8NEB7 543 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 ZNF622Q969S3 477 aaKnown RBP eCLIP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 CCDC102AQ96A19 550 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 C8orf76Q96K31 380 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 BAG1Q99933 345 aaPredicted RBP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 ARFGAP3Q9NP61 516 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 ARGLU1Q9NWB6 273 aaPredicted RBP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 DBF4Q9UBU7 674 aaPredicted RBP6.23□□□□□ -1.41
ATG4A-204ENST00000372246 RABGEF1Q9UJ41 708 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 AKAP2Q9Y2D5 859 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 PCDHA5Q9Y5H7 936 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 MRFAP1Q9Y605 127 aa6.23□□□□□ -1.41
ATG4A-204ENST00000372246 EFCAB8A8MWE9 144 aa6.22□□□□□ -1.41
ATG4A-204ENST00000372246 FOXP2O15409 715 aa6.22□□□□□ -1.41
ATG4A-204ENST00000372246 VSNL1P62760 191 aa6.22□□□□□ -1.41
ATG4A-204ENST00000372246 TPM4P67936 248 aa6.22□□□□□ -1.41
ATG4A-204ENST00000372246 FAM193AP78312 1265 aa6.22□□□□□ -1.41
ATG4A-204ENST00000372246 EXOSC10Q01780 885 aaKnown RBP6.22□□□□□ -1.41
ATG4A-204ENST00000372246 PTPN12Q05209 780 aaKnown RBP6.22□□□□□ -1.41
ATG4A-204ENST00000372246 LRRC24Q50LG9 513 aa6.22□□□□□ -1.41
ATG4A-204ENST00000372246 PLEKHO1Q53GL0 409 aaPredicted RBP6.22□□□□□ -1.41
ATG4A-204ENST00000372246 CCDC158Q5M9N0 1113 aa6.22□□□□□ -1.41
ATG4A-204ENST00000372246 NAA16Q6N069 864 aaPredicted RBP6.22□□□□□ -1.41
ATG4A-204ENST00000372246 NOA1Q8NC60 698 aaKnown RBP6.22□□□□□ -1.41
ATG4A-204ENST00000372246 OSBP2Q969R2 916 aa6.22□□□□□ -1.41
ATG4A-204ENST00000372246 EEF2KMTQ96G04 330 aa6.22□□□□□ -1.41
ATG4A-204ENST00000372246 ZNF396Q96N95 335 aaPredicted RBP6.22□□□□□ -1.41
ATG4A-204ENST00000372246 PUS3Q9BZE2 481 aaKnown RBP6.22□□□□□ -1.41
ATG4A-204ENST00000372246 AMOTL2Q9Y2J4 779 aa6.22□□□□□ -1.41
ATG4A-204ENST00000372246 SALL1Q9NSC2 1324 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 89.6 ms