RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 LARP1BQ659C4 914 aaKnown RBP9.68□□□□□ -0.86
SYNE1-206ENST00000367253 MCM10Q7L590 875 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 TMTC2Q8N394 836 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 RMDN2Q96LZ7 410 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 MRGBPQ9NV56 204 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 ARIH1Q9Y4X5 557 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-206ENST00000367253 PTPDC1A2A3K4 754 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 NMIQ13287 307 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-206ENST00000367253 RINLQ6ZS11 566 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 PAXBP1Q9Y5B6 917 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 CYP46A1Q9Y6A2 500 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 PLEKHG3A1L390 1219 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 ATP2B4P23634 1241 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 R3HDM1Q15032 1099 aaKnown RBP9.68□□□□□ -0.86
SYNE1-206ENST00000367253 ANKRD13DQ6ZTN6 518 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 CHURC1Q8WUH1 139 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 TTC12Q9H892 705 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-206ENST00000367253 THRAP3Q9Y2W1 955 aaKnown RBP9.68□□□□□ -0.86
SYNE1-206ENST00000367253 SH3TC1Q8TE82 1336 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 CROCC2H7BZ55 1655 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 PTPRTO14522 1441 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 NOL3O60936 208 aaKnown RBP9.68□□□□□ -0.86
SYNE1-206ENST00000367253 GCP02774 474 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 ZNF365Q70YC5 407 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 PUF60Q9UHX1 559 aaKnown RBP9.68□□□□□ -0.86
SYNE1-206ENST00000367253 GINS2Q9Y248 185 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 RABGAP1Q9Y3P9 1069 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 TRIM17Q9Y577 477 aa9.68□□□□□ -0.86
SYNE1-206ENST00000367253 XPOTO43592 962 aaKnown RBP9.67□□□□□ -0.86
SYNE1-206ENST00000367253 KRT13P13646 458 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 CCDC89Q8N998 374 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 KIAA1524Q8TCG1 905 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 ATRIPQ8WXE1 791 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 NCAPGQ9BPX3 1015 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 ZFYVE28Q9HCC9 887 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 PRDM5Q9NQX1 630 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-206ENST00000367253 EBAG9O00559 213 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 RAB11FIP3O75154 756 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 ATP2C2O75185 946 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 FERP16591 822 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 XPAP23025 273 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-206ENST00000367253 DMTNQ08495 405 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 HLTFQ14527 1009 aaKnown RBP eCLIP9.67□□□□□ -0.86
SYNE1-206ENST00000367253 RDH13Q8NBN7 331 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 NSRP1Q9H0G5 558 aaKnown RBP9.67□□□□□ -0.86
SYNE1-206ENST00000367253 ZNF213O14771 459 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 CYP7A1P22680 504 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 MCM6Q14566 821 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 USHBP1Q8N6Y0 703 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 IKBKGQ9Y6K9 419 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 GNAT2P19087 354 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 GSDMDP57764 484 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 PANK1Q8TE04 598 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 SLC12A5Q9H2X9 1139 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 VAT1LQ9HCJ6 419 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 ADD3Q9UEY8 706 aaKnown RBP9.67□□□□□ -0.86
SYNE1-206ENST00000367253 SLC12A7Q9Y666 1083 aa9.67□□□□□ -0.86
SYNE1-206ENST00000367253 ARHGAP31Q2M1Z3 1444 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 ZBTB7AO95365 584 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 ALDH1A1P00352 501 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 PRIM1P49642 420 aaKnown RBP9.66□□□□□ -0.86
SYNE1-206ENST00000367253 PTGDRQ13258 359 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 ICE2Q659A1 982 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 TEX11Q8IYF3 940 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 OTUD6BQ8N6M0 293 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 FLCNQ8NFG4 579 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 TEKT1Q969V4 418 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 IFT74Q96LB3 600 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 JRKLQ9Y4A0 524 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 TRPM2O94759 1503 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 FSD2A1L4K1 749 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 TOP1P11387 765 aaKnown RBP9.66□□□□□ -0.86
SYNE1-206ENST00000367253 RAB3GAP1Q15042 981 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 MAATS1Q7Z4T9 603 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 CACTINQ8WUQ7 758 aaKnown RBP9.66□□□□□ -0.86
SYNE1-206ENST00000367253 ARFGAP3Q9NP61 516 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 CLIP2Q9UDT6 1046 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.66□□□□□ -0.86
SYNE1-206ENST00000367253 WDR17Q8IZU2 1322 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 M0R2C6 588 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 USO1O60763 962 aaKnown RBP9.66□□□□□ -0.86
SYNE1-206ENST00000367253 ZSCAN20P17040 1043 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-206ENST00000367253 LMBR1LQ6UX01 489 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 ANKRD13AQ8IZ07 590 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 PPP1R12CQ9BZL4 782 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 ANO10Q9NW15 660 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 FBXO2Q9UK22 296 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-206ENST00000367253 RIMS2Q9UQ26 1411 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 PTPRCP08575 1304 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 GNAT1P11488 350 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 ZKSCAN8Q15776 578 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-206ENST00000367253 HAUS7Q99871 368 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 GLI2P10070 1586 aa9.66□□□□□ -0.86
SYNE1-206ENST00000367253 NDC80O14777 642 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 LMNB1P20700 586 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 KRBA2Q6ZNG9 492 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 TRMT1LQ7Z2T5 733 aaKnown RBP9.65□□□□□ -0.86
SYNE1-206ENST00000367253 MLXIPQ9HAP2 919 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 HACL1Q9UJ83 578 aa9.65□□□□□ -0.86
SYNE1-206ENST00000367253 CAPN2P17655 700 aa9.65□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms