RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 NCOA5Q9HCD5 579 aaKnown RBP17.5■□□□□ 0.39
PTPRF-201ENST00000359947 LZTFL1Q9NQ48 299 aa17.5■□□□□ 0.39
PTPRF-201ENST00000359947 SKILP12757 684 aa17.5■□□□□ 0.39
PTPRF-201ENST00000359947 HOOK2Q96ED9 719 aa17.5■□□□□ 0.39
PTPRF-201ENST00000359947 ATP2A1O14983 1001 aa17.5■□□□□ 0.39
PTPRF-201ENST00000359947 POTEB2H3BUK9 544 aa17.5■□□□□ 0.39
PTPRF-201ENST00000359947 TRIM37O94972 964 aa17.5■□□□□ 0.39
PTPRF-201ENST00000359947 RPL13P26373 211 aaKnown RBP17.5■□□□□ 0.39
PTPRF-201ENST00000359947 IQUBQ8NA54 791 aa17.5■□□□□ 0.39
PTPRF-201ENST00000359947 LEO1Q8WVC0 666 aaPredicted RBP17.5■□□□□ 0.39
PTPRF-201ENST00000359947 LMBR1Q8WVP7 490 aa17.5■□□□□ 0.39
PTPRF-201ENST00000359947 UAP1Q16222 522 aaPredicted RBP17.49■□□□□ 0.39
PTPRF-201ENST00000359947 KIAA0825Q8IV33 1275 aa17.49■□□□□ 0.39
PTPRF-201ENST00000359947 SPATA5Q8NB90 893 aa17.49■□□□□ 0.39
PTPRF-201ENST00000359947 PDE4DQ08499 809 aa17.49■□□□□ 0.39
PTPRF-201ENST00000359947 MFSD14BQ5SR56 506 aa17.49■□□□□ 0.39
PTPRF-201ENST00000359947 SPECC1LQ69YQ0 1117 aa17.49■□□□□ 0.39
PTPRF-201ENST00000359947 CARD14Q9BXL6 1004 aa17.49■□□□□ 0.39
PTPRF-201ENST00000359947 RLBP1P12271 317 aa17.49■□□□□ 0.39
PTPRF-201ENST00000359947 GIMAP7Q8NHV1 300 aa17.49■□□□□ 0.39
PTPRF-201ENST00000359947 GAS8O95995 478 aa17.49■□□□□ 0.39
PTPRF-201ENST00000359947 MRRFQ96E11 262 aaKnown RBP17.49■□□□□ 0.39
PTPRF-201ENST00000359947 CGNQ9P2M7 1197 aaKnown RBP17.49■□□□□ 0.39
PTPRF-201ENST00000359947 IFT81Q8WYA0 676 aa17.48■□□□□ 0.39
PTPRF-201ENST00000359947 GLG1Q92896 1179 aa17.48■□□□□ 0.39
PTPRF-201ENST00000359947 TTLL3Q9Y4R7 772 aa17.48■□□□□ 0.39
PTPRF-201ENST00000359947 TBX22Q9Y458 520 aa17.48■□□□□ 0.39
PTPRF-201ENST00000359947 SELENOSQ9BQE4 189 aa17.48■□□□□ 0.39
PTPRF-201ENST00000359947 E7EVH7 732 aa17.48■□□□□ 0.39
PTPRF-201ENST00000359947 KIF22Q14807 665 aa17.48■□□□□ 0.39
PTPRF-201ENST00000359947 DCPSQ96C86 337 aaKnown RBP17.48■□□□□ 0.39
PTPRF-201ENST00000359947 ABL1P00519 1130 aa17.48■□□□□ 0.39
PTPRF-201ENST00000359947 DDX12PQ92771 950 aa17.48■□□□□ 0.39
PTPRF-201ENST00000359947 GEN1Q17RS7 908 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 CCDC186Q7Z3E2 898 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 CHMLP26374 656 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 MICALCLQ6ZW33 695 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 LPIN2Q92539 896 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 FAM227BQ96M60 508 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 TESPA1A2RU30 521 aaPredicted RBP17.47■□□□□ 0.39
PTPRF-201ENST00000359947 CTAGE9A4FU28 777 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 DNM2P50570 870 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 PPP2R5CQ13362 524 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 DYMQ7RTS9 669 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 PHKBQ93100 1093 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 SUCLG2Q96I99 432 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 SPC25Q9HBM1 224 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 CTAGE15A4D2H0 777 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 CTAGE8P0CG41 777 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 GTF2F1P35269 517 aaKnown RBP eCLIP17.47■□□□□ 0.39
PTPRF-201ENST00000359947 CFAP58Q5T655 872 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 CTAGE6Q86UF2 777 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 CTAGE4Q8IX94 777 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 FBF1Q8TES7 1133 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 ZNF532Q9HCE3 1301 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 MYCT1Q8N699 235 aa17.47■□□□□ 0.39
PTPRF-201ENST00000359947 FRMPD2Q68DX3 1309 aaPredicted RBP17.46■□□□□ 0.39
PTPRF-201ENST00000359947 ZAP70P43403 619 aa17.46■□□□□ 0.39
PTPRF-201ENST00000359947 RNASE9P60153 205 aaKnown RBP17.46■□□□□ 0.39
PTPRF-201ENST00000359947 C6orf163Q5TEZ5 329 aa17.46■□□□□ 0.39
PTPRF-201ENST00000359947 NOC4LQ9BVI4 516 aaKnown RBP17.46■□□□□ 0.39
PTPRF-201ENST00000359947 KIFAP3Q92845 792 aa17.46■□□□□ 0.39
PTPRF-201ENST00000359947 DCTPP1Q9H773 170 aa17.46■□□□□ 0.39
PTPRF-201ENST00000359947 MCM6Q14566 821 aa17.46■□□□□ 0.39
PTPRF-201ENST00000359947 CCDC77Q9BR77 488 aa17.46■□□□□ 0.39
PTPRF-201ENST00000359947 KMT5BQ4FZB7 885 aa17.46■□□□□ 0.39
PTPRF-201ENST00000359947 PLEKHM2Q8IWE5 1019 aa17.46■□□□□ 0.39
PTPRF-201ENST00000359947 ADCY7P51828 1080 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 NAP1L4Q99733 375 aaKnown RBP17.45■□□□□ 0.38
PTPRF-201ENST00000359947 IFNKQ9P0W0 207 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 KRT86O43790 486 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 KRT83P78385 493 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 HAUS3Q68CZ6 603 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-201ENST00000359947 TLDC2A0PJX2 215 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 ARHGEF16Q5VV41 709 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 SULF1Q8IWU6 871 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 CDAN1Q8IWY9 1227 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 TEKT1Q969V4 418 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 PPANQ9NQ55 473 aaKnown RBP17.45■□□□□ 0.38
PTPRF-201ENST00000359947 ZBTB16Q05516 673 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 PRAG1Q86YV5 1406 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 KCNQ4P56696 695 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 NCAPG2Q86XI2 1143 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 VPS16Q9H269 839 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 BICRAQ9NZM4 1560 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 DEXIO95424 95 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 BRAPQ7Z569 592 aa17.45■□□□□ 0.38
PTPRF-201ENST00000359947 ZNF496Q96IT1 587 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-201ENST00000359947 GCNT3O95395 438 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 TFAP4Q01664 338 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 CCDC14Q49A88 953 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 OTUD7BQ6GQQ9 843 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 CLSTN2Q9H4D0 955 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 MLXIPQ9HAP2 919 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 TPH2Q8IWU9 490 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 TRPC6Q9Y210 931 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 CAVIN2O95810 425 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 TYRO3Q06418 890 aa17.44■□□□□ 0.38
PTPRF-201ENST00000359947 SPOPO43791 374 aa17.44■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms