RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 SPOPO43791 374 aa10.9□□□□□ -0.66
CHD3-202ENST00000358181 PPP4R3BQ5MIZ7 849 aa10.9□□□□□ -0.66
CHD3-202ENST00000358181 TAB3Q8N5C8 712 aaPredicted RBP10.9□□□□□ -0.66
CHD3-202ENST00000358181 RMND1Q9NWS8 449 aa10.9□□□□□ -0.66
CHD3-202ENST00000358181 RBM27Q9P2N5 1060 aaKnown RBP10.9□□□□□ -0.66
CHD3-202ENST00000358181 ABT1Q9ULW3 272 aaKnown RBP10.9□□□□□ -0.66
CHD3-202ENST00000358181 FAM95CA0A1B0GW59 222 aa10.9□□□□□ -0.67
CHD3-202ENST00000358181 KCTD17Q8N5Z5 321 aa10.9□□□□□ -0.67
CHD3-202ENST00000358181 ZBED2Q9BTP6 218 aa10.9□□□□□ -0.67
CHD3-202ENST00000358181 MAGEB6P1A0A0J9YX57 407 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 YARSP54577 528 aaKnown RBP10.89□□□□□ -0.67
CHD3-202ENST00000358181 PNMA8AQ86V59 439 aaPredicted RBP10.89□□□□□ -0.67
CHD3-202ENST00000358181 DDX17Q92841 729 aaKnown RBP10.89□□□□□ -0.67
CHD3-202ENST00000358181 TRIM27P14373 513 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 PRPF38AQ8NAV1 312 aaKnown RBP10.89□□□□□ -0.67
CHD3-202ENST00000358181 NEK11Q8NG66 645 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 TOP2BQ02880 1626 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 KRT3P12035 628 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 SSFA2P28290 1259 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 DISP3Q9P2K9 1392 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 KIF14Q15058 1648 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 ZRANB2O95218 330 aaKnown RBP eCLIP10.89□□□□□ -0.67
CHD3-202ENST00000358181 IVLP07476 585 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 GJB2P29033 226 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 NECAB1Q8N987 351 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 ABCC5O15440 1437 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 GABPB2Q8TAK5 448 aaPredicted RBP10.89□□□□□ -0.67
CHD3-202ENST00000358181 KIFAP3Q92845 792 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 ORC3Q9UBD5 711 aaPredicted RBP10.89□□□□□ -0.67
CHD3-202ENST00000358181 A0A1B0GUL7 405 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 CAPN9O14815 690 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 TCP10Q12799 353 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 EVI5LQ96CN4 794 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 SPDL1Q96EA4 605 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 VCX3BQ9H321 246 aa10.89□□□□□ -0.67
CHD3-202ENST00000358181 IQGAP2Q13576 1575 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 NPR1P16066 1061 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 MCM6Q14566 821 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 CTAGE6Q86UF2 777 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 MMS19Q96T76 1030 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 SYTL2Q9HCH5 934 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 MCM9Q9NXL9 1143 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 PNMA2Q9UL42 364 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 PA2G4Q9UQ80 394 aaKnown RBP10.88□□□□□ -0.67
CHD3-202ENST00000358181 S100BP04271 92 aaPredicted RBP10.88□□□□□ -0.67
CHD3-202ENST00000358181 UBXN1Q04323 297 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 FYB2Q5VWT5 728 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 POTEB2H3BUK9 544 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 KRT24Q2M2I5 525 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 LMBR1Q8WVP7 490 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 HDAC11Q96DB2 347 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 RILPQ96NA2 401 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 BCS1LQ9Y276 419 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 NUB1Q9Y5A7 615 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 CCDC141Q6ZP82 1450 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 NVLO15381 856 aaKnown RBP10.88□□□□□ -0.67
CHD3-202ENST00000358181 DTNBO60941 627 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 GLRX3O76003 335 aaKnown RBP10.88□□□□□ -0.67
CHD3-202ENST00000358181 CLNS1AP54105 237 aaKnown RBP10.88□□□□□ -0.67
CHD3-202ENST00000358181 HS2ST1Q7LGA3 356 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 SMYD2Q9NRG4 433 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 TRPC6Q9Y210 931 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 CYLC1P35663 651 aaPredicted RBP10.88□□□□□ -0.67
CHD3-202ENST00000358181 KARSQ15046 597 aaKnown RBP10.88□□□□□ -0.67
CHD3-202ENST00000358181 LZTFL1Q9NQ48 299 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 ST7Q9NRC1 585 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 ANGPTL3Q9Y5C1 460 aa10.88□□□□□ -0.67
CHD3-202ENST00000358181 STX17P56962 302 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 CDAN1Q8IWY9 1227 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 RPAP2Q8IXW5 612 aaPredicted RBP10.87□□□□□ -0.67
CHD3-202ENST00000358181 ABI1Q8IZP0 508 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 NCOA7Q8NI08 942 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 HVCN1Q96D96 273 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 GTF2A1P52655 376 aaPredicted RBP10.87□□□□□ -0.67
CHD3-202ENST00000358181 TNNQ9UQP3 1299 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 CD19P15391 556 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 HPDP32754 393 aaPredicted RBP10.87□□□□□ -0.67
CHD3-202ENST00000358181 DNM2P50570 870 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 STX1AQ16623 288 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 RILPL1Q5EBL4 403 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 ZGPATQ8N5A5 531 aaKnown RBP10.87□□□□□ -0.67
CHD3-202ENST00000358181 NLRP3Q96P20 1036 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 SAMD15Q9P1V8 674 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 MCUQ8NE86 351 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 ZSCAN16Q9H4T2 348 aaPredicted RBP10.87□□□□□ -0.67
CHD3-202ENST00000358181 TBC1D7Q9P0N9 293 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 SUGT1Q9Y2Z0 365 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 RNF8O76064 485 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 ZNF853P0CG23 659 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 AAMPQ13685 434 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 RTN1Q16799 776 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 CCDC183Q5T5S1 534 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 TRIM31Q9BZY9 425 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 CTAGE5O15320 804 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 IGHDP01880 384 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 NBPF7P0C2Y1 421 aaPredicted RBP10.87□□□□□ -0.67
CHD3-202ENST00000358181 SMTNP53814 917 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 KRT81Q14533 505 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 GDAP1Q8TB36 358 aa10.87□□□□□ -0.67
CHD3-202ENST00000358181 ZNF653Q96CK0 615 aa10.87□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms