RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 PALLDQ8WX93 1383 aa16.89■□□□□ 0.29
COL17A1-201ENST00000353479 hCG_1642624A0A1W2PR95 340 aa16.89■□□□□ 0.29
COL17A1-201ENST00000353479 IFNL3Q8IZI9 196 aa16.89■□□□□ 0.29
COL17A1-201ENST00000353479 ZNF521Q96K83 1311 aa16.89■□□□□ 0.29
COL17A1-201ENST00000353479 PPEF1O14829 653 aaPredicted RBP16.89■□□□□ 0.29
COL17A1-201ENST00000353479 PHACTR2O75167 634 aa16.89■□□□□ 0.29
COL17A1-201ENST00000353479 NOP2P46087 812 aaKnown RBP16.89■□□□□ 0.29
COL17A1-201ENST00000353479 SPAG1Q07617 926 aa16.89■□□□□ 0.29
COL17A1-201ENST00000353479 USP37Q86T82 979 aa16.89■□□□□ 0.29
COL17A1-201ENST00000353479 CCNT1O60563 726 aaKnown RBP16.89■□□□□ 0.29
COL17A1-201ENST00000353479 TYRO3Q06418 890 aa16.89■□□□□ 0.29
COL17A1-201ENST00000353479 NLRP10Q86W26 655 aa16.89■□□□□ 0.29
COL17A1-201ENST00000353479 TLR7Q9NYK1 1049 aaKnown RBP16.89■□□□□ 0.29
COL17A1-201ENST00000353479 CPXCR1Q8N123 301 aa16.89■□□□□ 0.29
COL17A1-201ENST00000353479 SRP68Q9UHB9 627 aaKnown RBP16.89■□□□□ 0.29
COL17A1-201ENST00000353479 CHMP2AO43633 222 aa16.88■□□□□ 0.29
COL17A1-201ENST00000353479 FAM173BQ6P4H8 233 aa16.88■□□□□ 0.29
COL17A1-201ENST00000353479 MAP7D2Q96T17 732 aa16.88■□□□□ 0.29
COL17A1-201ENST00000353479 TMCO5BA8MYB1 307 aa16.88■□□□□ 0.29
COL17A1-201ENST00000353479 USH1GQ495M9 461 aa16.88■□□□□ 0.29
COL17A1-201ENST00000353479 CTNNBL1Q8WYA6 563 aaPredicted RBP16.88■□□□□ 0.29
COL17A1-201ENST00000353479 DBNLQ9UJU6 430 aaKnown RBP16.88■□□□□ 0.29
COL17A1-201ENST00000353479 CLTCQ00610 1675 aaKnown RBP16.88■□□□□ 0.29
COL17A1-201ENST00000353479 CIAO1O76071 339 aa16.88■□□□□ 0.29
COL17A1-201ENST00000353479 UBE4AQ14139 1066 aa16.88■□□□□ 0.29
COL17A1-201ENST00000353479 ATL3Q6DD88 541 aa16.88■□□□□ 0.29
COL17A1-201ENST00000353479 XDHP47989 1333 aa16.88■□□□□ 0.29
COL17A1-201ENST00000353479 AKR1B10O60218 316 aa16.88■□□□□ 0.29
COL17A1-201ENST00000353479 EAPPQ56P03 285 aaPredicted RBP16.88■□□□□ 0.29
COL17A1-201ENST00000353479 ALS2CR12Q96Q35 445 aa16.88■□□□□ 0.29
COL17A1-201ENST00000353479 GPR162Q16538 588 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 ANO1Q5XXA6 986 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 ARHGAP27Q6ZUM4 889 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.87■□□□□ 0.29
COL17A1-201ENST00000353479 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.87■□□□□ 0.29
COL17A1-201ENST00000353479 TNS3Q68CZ2 1445 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 BTDP43251 543 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 RIMBP3CA6NJZ7 1639 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 RIMBP3BA6NNM3 1639 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 RIMBP3Q9UFD9 1639 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 E9PCH4 1651 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 EIF3JO75822 258 aaKnown RBP16.87■□□□□ 0.29
COL17A1-201ENST00000353479 HSPD1P10809 573 aaKnown RBP16.87■□□□□ 0.29
COL17A1-201ENST00000353479 LUZP1Q86V48 1076 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 TCP10L2B9ZVM9 353 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 JAK2O60674 1132 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 PAFAH1B1P43034 410 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 TAX1BP1Q86VP1 789 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 GOPCQ9HD26 462 aa16.87■□□□□ 0.29
COL17A1-201ENST00000353479 ADCY7P51828 1080 aa16.86■□□□□ 0.29
COL17A1-201ENST00000353479 TBC1D5Q92609 795 aa16.86■□□□□ 0.29
COL17A1-201ENST00000353479 ERVV-1B6SEH8 477 aa16.86■□□□□ 0.29
COL17A1-201ENST00000353479 KCNJ14Q9UNX9 436 aa16.86■□□□□ 0.29
COL17A1-201ENST00000353479 CAMSAP1Q5T5Y3 1602 aa16.86■□□□□ 0.29
COL17A1-201ENST00000353479 AFF2P51816 1311 aa16.86■□□□□ 0.29
COL17A1-201ENST00000353479 CCT6AP40227 531 aaKnown RBP16.86■□□□□ 0.29
COL17A1-201ENST00000353479 TAF3Q5VWG9 929 aa16.86■□□□□ 0.29
COL17A1-201ENST00000353479 HOMER2Q9NSB8 354 aa16.86■□□□□ 0.29
COL17A1-201ENST00000353479 TULP4Q9NRJ4 1543 aa16.86■□□□□ 0.29
COL17A1-201ENST00000353479 TXKP42681 527 aa16.86■□□□□ 0.29
COL17A1-201ENST00000353479 ELP1O95163 1332 aa16.86■□□□□ 0.29
COL17A1-201ENST00000353479 ANKRD62A6NC57 917 aa16.85■□□□□ 0.29
COL17A1-201ENST00000353479 MYCLP12524 364 aaPredicted RBP16.85■□□□□ 0.29
COL17A1-201ENST00000353479 PPP2R5BQ15173 497 aa16.85■□□□□ 0.29
COL17A1-201ENST00000353479 KRT40Q6A162 431 aa16.85■□□□□ 0.29
COL17A1-201ENST00000353479 SV2BQ7L1I2 683 aa16.85■□□□□ 0.29
COL17A1-201ENST00000353479 HS2ST1Q7LGA3 356 aa16.85■□□□□ 0.29
COL17A1-201ENST00000353479 SPDYE4A6NLX3 237 aa16.85■□□□□ 0.29
COL17A1-201ENST00000353479 FAM212AQ96EL1 285 aa16.85■□□□□ 0.29
COL17A1-201ENST00000353479 TTC38Q5R3I4 469 aa16.85■□□□□ 0.29
COL17A1-201ENST00000353479 CCDC172P0C7W6 258 aa16.85■□□□□ 0.29
COL17A1-201ENST00000353479 PRPF4BQ13523 1007 aaKnown RBP16.85■□□□□ 0.29
COL17A1-201ENST00000353479 LZTS2Q9BRK4 669 aa16.85■□□□□ 0.29
COL17A1-201ENST00000353479 BICDL2A1A5D9 508 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 ZBED4O75132 1171 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 VSIG10Q8N0Z9 540 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 CCDC102AQ96A19 550 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 ABCA6Q8N139 1617 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 ZNF654Q8IZM8 581 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 TM6SF1Q9BZW5 370 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 LEMD3Q9Y2U8 911 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 MADDQ8WXG6 1647 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 FGAP02671 866 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 PLCD1P51178 756 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 FAM160A1Q05DH4 1040 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 TNFAIP1Q13829 316 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 NSMFQ6X4W1 530 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 UIMC1Q96RL1 719 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 GLT8D2Q9H1C3 349 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 DIP2CQ9Y2E4 1556 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 CTNNA2P26232 953 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 ARID4AP29374 1257 aaPredicted RBP16.84■□□□□ 0.29
COL17A1-201ENST00000353479 NONOQ15233 471 aaKnown RBP eCLIP16.84■□□□□ 0.29
COL17A1-201ENST00000353479 SPECC1Q5M775 1068 aa16.84■□□□□ 0.29
COL17A1-201ENST00000353479 ZSCAN10Q96SZ4 725 aaPredicted RBP16.84■□□□□ 0.29
COL17A1-201ENST00000353479 SNW1Q13573 536 aaKnown RBP16.83■□□□□ 0.29
COL17A1-201ENST00000353479 DRC1Q96MC2 740 aa16.83■□□□□ 0.29
COL17A1-201ENST00000353479 GPR108Q9NPR9 543 aa16.83■□□□□ 0.29
COL17A1-201ENST00000353479 VPS54Q9P1Q0 977 aa16.83■□□□□ 0.29
COL17A1-201ENST00000353479 KIFC2Q96AC6 838 aa16.83■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms