RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 CRACR2BQ8N4Y2 399 aaPredicted RBP10.96□□□□□ -0.66
USP4-202ENST00000351842 TRIM34Q9BYJ4 488 aa10.96□□□□□ -0.66
USP4-202ENST00000351842 NMRK2Q9NPI5 230 aa10.96□□□□□ -0.66
USP4-202ENST00000351842 GGA3Q9NZ52 723 aa10.96□□□□□ -0.66
USP4-202ENST00000351842 B4E1Z4 1266 aa10.95□□□□□ -0.66
USP4-202ENST00000351842 ANP32AP39687 249 aaKnown RBP10.95□□□□□ -0.66
USP4-202ENST00000351842 STK3Q13188 491 aa10.95□□□□□ -0.66
USP4-202ENST00000351842 GRM1Q13255 1194 aa10.95□□□□□ -0.66
USP4-202ENST00000351842 SLF2Q8IX21 1173 aa10.95□□□□□ -0.66
USP4-202ENST00000351842 RRAGCQ9HB90 399 aa10.95□□□□□ -0.66
USP4-202ENST00000351842 GPHNQ9NQX3 736 aaPredicted RBP10.95□□□□□ -0.66
USP4-202ENST00000351842 FRMD4AQ9P2Q2 1039 aaPredicted RBP10.95□□□□□ -0.66
USP4-202ENST00000351842 FZD9O00144 591 aa10.95□□□□□ -0.66
USP4-202ENST00000351842 SLC27A2O14975 620 aa10.95□□□□□ -0.66
USP4-202ENST00000351842 IMMTQ16891 758 aaKnown RBP10.95□□□□□ -0.66
USP4-202ENST00000351842 CCDC84Q86UT8 332 aaPredicted RBP10.95□□□□□ -0.66
USP4-202ENST00000351842 DCP1AQ9NPI6 582 aaPredicted RBP10.95□□□□□ -0.66
USP4-202ENST00000351842 RAD50Q92878 1312 aa10.95□□□□□ -0.66
USP4-202ENST00000351842 FOXP2O15409 715 aa10.94□□□□□ -0.66
USP4-202ENST00000351842 HSP90AA1P07900 732 aaKnown RBP10.94□□□□□ -0.66
USP4-202ENST00000351842 RXRAP19793 462 aa10.94□□□□□ -0.66
USP4-202ENST00000351842 SHROOM1Q2M3G4 852 aaPredicted RBP10.94□□□□□ -0.66
USP4-202ENST00000351842 GRIPAP1Q4V328 841 aa10.94□□□□□ -0.66
USP4-202ENST00000351842 RALYLQ86SE5 291 aaKnown RBP10.94□□□□□ -0.66
USP4-202ENST00000351842 CCDC144CPQ8IYA2 1237 aa10.94□□□□□ -0.66
USP4-202ENST00000351842 MKNK2Q9HBH9 465 aa10.94□□□□□ -0.66
USP4-202ENST00000351842 MYH2Q9UKX2 1941 aa10.94□□□□□ -0.66
USP4-202ENST00000351842 TTLL12Q14166 644 aaPredicted RBP10.94□□□□□ -0.66
USP4-202ENST00000351842 NKX2-3Q8TAU0 364 aa10.94□□□□□ -0.66
USP4-202ENST00000351842 SNED1Q8TER0 1413 aa10.94□□□□□ -0.66
USP4-202ENST00000351842 PATL2C9JE40 543 aaKnown RBP10.94□□□□□ -0.66
USP4-202ENST00000351842 MAP1SQ66K74 1059 aaPredicted RBP10.94□□□□□ -0.66
USP4-202ENST00000351842 TBC1D10CQ8IV04 446 aa10.94□□□□□ -0.66
USP4-202ENST00000351842 CSRNP1Q96S65 589 aa10.94□□□□□ -0.66
USP4-202ENST00000351842 HACL1Q9UJ83 578 aa10.94□□□□□ -0.66
USP4-202ENST00000351842 SPDYE2BA6NHP3 402 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 NMT2O60551 498 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 SPDYE6P0CI01 402 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 AMOTL1Q8IY63 956 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 PIBF1Q8WXW3 757 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 GPRC5DQ9NZD1 345 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 SNX14Q9Y5W7 946 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 A0A1B0GUL6 1792 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 BAZ2AQ9UIF9 1905 aaKnown RBP10.93□□□□□ -0.66
USP4-202ENST00000351842 FLT1P17948 1338 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 DDTLA6NHG4 134 aaPredicted RBP10.93□□□□□ -0.66
USP4-202ENST00000351842 WDHD1O75717 1129 aaPredicted RBP10.93□□□□□ -0.66
USP4-202ENST00000351842 GDF11O95390 407 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 RHBDL3P58872 404 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 TRDNQ13061 729 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 RNF20Q5VTR2 975 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 GPC2Q8N158 579 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 CCDC82Q8N4S0 544 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 MAP4K1Q92918 833 aa10.93□□□□□ -0.66
USP4-202ENST00000351842 BAZ2BQ9UIF8 2168 aaKnown RBP10.93□□□□□ -0.66
USP4-202ENST00000351842 ADAMTSL1Q8N6G6 1762 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 GPR75-ASB3A0A0A6YYF3 556 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 ADM5C9JUS6 153 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 FOSBP53539 338 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 RASA3Q14644 834 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 STOX1Q6ZVD7 989 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 TBC1D32Q96NH3 1257 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 ZNF70Q9UC06 446 aaPredicted RBP10.92□□□□□ -0.66
USP4-202ENST00000351842 KIF13BQ9NQT8 1826 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 LRRC37AA6NMS7 1700 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 ECM2O94769 699 aaPredicted RBP10.92□□□□□ -0.66
USP4-202ENST00000351842 CD2BP2O95400 341 aaKnown RBP10.92□□□□□ -0.66
USP4-202ENST00000351842 HIRAP54198 1017 aaPredicted RBP10.92□□□□□ -0.66
USP4-202ENST00000351842 PPARAQ07869 468 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 ZYXQ15942 572 aaKnown RBP10.92□□□□□ -0.66
USP4-202ENST00000351842 CTR9Q6PD62 1173 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 STX8Q9UNK0 236 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 U3KPZ7 1027 aaPredicted RBP10.92□□□□□ -0.66
USP4-202ENST00000351842 KIAA1551Q9HCM1 1747 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 MFSD6Q6ZSS7 791 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 IPO9Q96P70 1041 aaKnown RBP10.92□□□□□ -0.66
USP4-202ENST00000351842 MYL10Q9BUA6 226 aa10.92□□□□□ -0.66
USP4-202ENST00000351842 BRCA1P38398 1863 aaKnown RBP10.91□□□□□ -0.66
USP4-202ENST00000351842 AGBL3Q8NEM8 1001 aa10.91□□□□□ -0.66
USP4-202ENST00000351842 ZDHHC15Q96MV8 337 aa10.91□□□□□ -0.66
USP4-202ENST00000351842 GMLQ99445 158 aa10.91□□□□□ -0.66
USP4-202ENST00000351842 SLKQ9H2G2 1235 aaPredicted RBP10.91□□□□□ -0.66
USP4-202ENST00000351842 SALL1Q9NSC2 1324 aa10.91□□□□□ -0.66
USP4-202ENST00000351842 TSPY2A6NKD2 308 aa10.91□□□□□ -0.66
USP4-202ENST00000351842 E7EWF7 191 aa10.91□□□□□ -0.66
USP4-202ENST00000351842 EPHX2P34913 555 aa10.91□□□□□ -0.66
USP4-202ENST00000351842 MKRN3Q13064 507 aaKnown RBP10.91□□□□□ -0.66
USP4-202ENST00000351842 RAB3GAP1Q15042 981 aa10.91□□□□□ -0.66
USP4-202ENST00000351842 GLIS2Q9BZE0 524 aaPredicted RBP10.91□□□□□ -0.66
USP4-202ENST00000351842 SERPINA10Q9UK55 444 aa10.91□□□□□ -0.66
USP4-202ENST00000351842 NEDD4P46934 1319 aa10.91□□□□□ -0.66
USP4-202ENST00000351842 FER1L6Q2WGJ9 1857 aa10.91□□□□□ -0.66
USP4-202ENST00000351842 TRAF5O00463 557 aa10.9□□□□□ -0.66
USP4-202ENST00000351842 BLOC1S2Q6QNY1 142 aa10.9□□□□□ -0.66
USP4-202ENST00000351842 NFXL1Q6ZNB6 911 aa10.9□□□□□ -0.66
USP4-202ENST00000351842 MOB2Q70IA6 237 aa10.9□□□□□ -0.66
USP4-202ENST00000351842 DEFB129Q9H1M3 183 aa10.9□□□□□ -0.66
USP4-202ENST00000351842 FAM198AQ9UFP1 575 aa10.9□□□□□ -0.66
USP4-202ENST00000351842 CTNNA3Q9UI47 895 aa10.9□□□□□ -0.66
USP4-202ENST00000351842 HSPA4P34932 840 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms