RNA–Protein interactions for RNA: ENST00000345356.10

COL12A1-202, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL12A1, Length 5,886 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-202ENST00000345356 NUP58Q9BVL2 599 aa13.53□□□□□ -0.24
COL12A1-202ENST00000345356 EIF3CLB5ME19 914 aaKnown RBP13.53□□□□□ -0.24
COL12A1-202ENST00000345356 MAP7Q14244 749 aa13.53□□□□□ -0.24
COL12A1-202ENST00000345356 AMOTQ4VCS5 1084 aa13.53□□□□□ -0.24
COL12A1-202ENST00000345356 TADA2BQ86TJ2 420 aa13.53□□□□□ -0.24
COL12A1-202ENST00000345356 CCDC110Q8TBZ0 833 aa13.53□□□□□ -0.24
COL12A1-202ENST00000345356 TSNARE1Q96NA8 513 aa13.53□□□□□ -0.24
COL12A1-202ENST00000345356 EIF3CQ99613 913 aaKnown RBP13.53□□□□□ -0.24
COL12A1-202ENST00000345356 PLCB1Q9NQ66 1216 aa13.53□□□□□ -0.24
COL12A1-202ENST00000345356 ATP6V0A2Q9Y487 856 aa13.53□□□□□ -0.24
COL12A1-202ENST00000345356 RNF113AO15541 343 aaKnown RBP13.52□□□□□ -0.24
COL12A1-202ENST00000345356 PHLDB2Q86SQ0 1253 aa13.52□□□□□ -0.24
COL12A1-202ENST00000345356 VPS52Q8N1B4 723 aa13.52□□□□□ -0.24
COL12A1-202ENST00000345356 TXNDC9O14530 226 aa13.52□□□□□ -0.24
COL12A1-202ENST00000345356 ESR2Q92731 530 aa13.52□□□□□ -0.24
COL12A1-202ENST00000345356 FAM227BQ96M60 508 aa13.52□□□□□ -0.24
COL12A1-202ENST00000345356 RAB3IPQ96QF0 476 aaPredicted RBP13.52□□□□□ -0.24
COL12A1-202ENST00000345356 MORC2Q9Y6X9 1032 aaPredicted RBP13.52□□□□□ -0.24
COL12A1-202ENST00000345356 SEL1L2Q5TEA6 688 aa13.52□□□□□ -0.25
COL12A1-202ENST00000345356 ADALQ6DHV7 355 aa13.52□□□□□ -0.25
COL12A1-202ENST00000345356 LDHAL6AQ6ZMR3 332 aa13.52□□□□□ -0.25
COL12A1-202ENST00000345356 FCHSD1Q86WN1 690 aa13.52□□□□□ -0.25
COL12A1-202ENST00000345356 HINFPQ9BQA5 517 aa13.52□□□□□ -0.25
COL12A1-202ENST00000345356 ADAM21Q9UKJ8 722 aa13.52□□□□□ -0.25
COL12A1-202ENST00000345356 GRIN2BQ13224 1484 aa13.52□□□□□ -0.25
COL12A1-202ENST00000345356 TTC21AQ8NDW8 1320 aa13.52□□□□□ -0.25
COL12A1-202ENST00000345356 PDE1CQ14123 709 aaPredicted RBP13.52□□□□□ -0.25
COL12A1-202ENST00000345356 TSKSQ9UJT2 592 aa13.52□□□□□ -0.25
COL12A1-202ENST00000345356 RFC1P35251 1148 aaPredicted RBP13.52□□□□□ -0.25
COL12A1-202ENST00000345356 TNIP1Q15025 636 aa13.52□□□□□ -0.25
COL12A1-202ENST00000345356 BEND3Q5T5X7 828 aa13.52□□□□□ -0.25
COL12A1-202ENST00000345356 GPIHBP1Q8IV16 184 aa13.52□□□□□ -0.25
COL12A1-202ENST00000345356 MGARPQ8TDB4 240 aa13.52□□□□□ -0.25
COL12A1-202ENST00000345356 PHACTR3Q96KR7 559 aa13.52□□□□□ -0.25
COL12A1-202ENST00000345356 RGS12O14924 1447 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 BRD2P25440 801 aaKnown RBP13.51□□□□□ -0.25
COL12A1-202ENST00000345356 PLCB3Q01970 1234 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 KMT5BQ4FZB7 885 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 ARHGAP24Q8N264 748 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 PDLIM2Q96JY6 352 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 SLC24A3Q9HC58 644 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 ZNF174Q15697 407 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 CCDC62Q6P9F0 684 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 CSGALNACT2Q8N6G5 542 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 STX10O60499 249 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 RASIP1Q5U651 963 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 ZSCAN29Q8IWY8 852 aaPredicted RBP13.51□□□□□ -0.25
COL12A1-202ENST00000345356 NOS1P29475 1434 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 PDE4BQ07343 736 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 NAA30Q147X3 362 aaPredicted RBP13.51□□□□□ -0.25
COL12A1-202ENST00000345356 DZIP1Q86YF9 867 aaKnown RBP13.51□□□□□ -0.25
COL12A1-202ENST00000345356 ZBTB3Q9H5J0 574 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 NUP160Q12769 1436 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 PFDN1O60925 122 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 ATF3P18847 181 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 DTHD1Q6ZMT9 781 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 HEATR3Q7Z4Q2 680 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 TM6SF1Q9BZW5 370 aa13.51□□□□□ -0.25
COL12A1-202ENST00000345356 C14orf93Q9H972 538 aaKnown RBP13.51□□□□□ -0.25
COL12A1-202ENST00000345356 CASQ2O14958 399 aaPredicted RBP13.5□□□□□ -0.25
COL12A1-202ENST00000345356 SH3BGRP55822 239 aaPredicted RBP13.5□□□□□ -0.25
COL12A1-202ENST00000345356 USP28Q96RU2 1077 aa13.5□□□□□ -0.25
COL12A1-202ENST00000345356 IFIH1Q9BYX4 1025 aaKnown RBP13.5□□□□□ -0.25
COL12A1-202ENST00000345356 FANCLQ9NW38 375 aa13.5□□□□□ -0.25
COL12A1-202ENST00000345356 EEF2P13639 858 aaKnown RBP13.5□□□□□ -0.25
COL12A1-202ENST00000345356 PFKFB1P16118 471 aa13.5□□□□□ -0.25
COL12A1-202ENST00000345356 RASSF2P50749 326 aa13.5□□□□□ -0.25
COL12A1-202ENST00000345356 SLC9C2Q5TAH2 1124 aa13.5□□□□□ -0.25
COL12A1-202ENST00000345356 ZSCAN20P17040 1043 aaPredicted RBP13.5□□□□□ -0.25
COL12A1-202ENST00000345356 DIXDC1Q155Q3 683 aa13.5□□□□□ -0.25
COL12A1-202ENST00000345356 DENND2CQ68D51 928 aa13.5□□□□□ -0.25
COL12A1-202ENST00000345356 TCP11Q8WWU5 503 aa13.5□□□□□ -0.25
COL12A1-202ENST00000345356 RGS16O15492 202 aaPredicted RBP13.5□□□□□ -0.25
COL12A1-202ENST00000345356 SLFNL1Q499Z3 407 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 SLC9C1Q4G0N8 1177 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 ZBTB12Q9Y330 459 aaPredicted RBP13.49□□□□□ -0.25
COL12A1-202ENST00000345356 SLC4A4Q9Y6R1 1079 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 PSMC4P43686 418 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 GOLGA8FQ08AF8 430 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 GOLGA8DPQ0D2H9 430 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 ZKSCAN8Q15776 578 aaPredicted RBP13.49□□□□□ -0.25
COL12A1-202ENST00000345356 C11orf57Q6ZUT1 292 aaPredicted RBP13.49□□□□□ -0.25
COL12A1-202ENST00000345356 ANKRD42Q8N9B4 389 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 TRIM58Q8NG06 486 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 MRRFQ96E11 262 aaKnown RBP13.49□□□□□ -0.25
COL12A1-202ENST00000345356 KLHL14Q9P2G3 628 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 SESN3P58005 492 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 TOM1L2Q6ZVM7 507 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 SLC35F6Q8N357 371 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 DDX27Q96GQ7 796 aaKnown RBP13.49□□□□□ -0.25
COL12A1-202ENST00000345356 COL17A1Q9UMD9 1497 aaPredicted RBP13.49□□□□□ -0.25
COL12A1-202ENST00000345356 RPS6KA1Q15418 735 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 KSR2Q6VAB6 950 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 RPUSD2Q8IZ73 545 aaKnown RBP13.49□□□□□ -0.25
COL12A1-202ENST00000345356 CASP8Q14790 479 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 G2E3Q7L622 706 aa13.49□□□□□ -0.25
COL12A1-202ENST00000345356 GBP7Q8N8V2 638 aaPredicted RBP13.49□□□□□ -0.25
COL12A1-202ENST00000345356 SNAPC4Q5SXM2 1469 aa13.48□□□□□ -0.25
COL12A1-202ENST00000345356 SSH2Q76I76 1423 aa13.48□□□□□ -0.25
COL12A1-202ENST00000345356 WASLO00401 505 aaPredicted RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms