RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 CDC23Q9UJX2 597 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 FAM169AQ9Y6X4 670 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 SPATA31A3Q5VYP0 1347 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 FAM208AQ9UK61 1670 aaKnown RBP9.29□□□□□ -0.92
ATG4A-201ENST00000343524 SBNO1A3KN83 1393 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 A0A1W2PQ27 194 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 A0A1W2PQ64 194 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 A0A1W2PQD8 194 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 CHGAP10645 457 aaKnown RBP9.29□□□□□ -0.92
ATG4A-201ENST00000343524 NLRP12P59046 1061 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 KRT32Q14532 448 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 WHAMMP3Q1A5X7 153 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 KRT24Q2M2I5 525 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 WDR93Q6P2C0 686 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 ENGASEQ8NFI3 743 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 PI4K2BQ8TCG2 481 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 DHX58Q96C10 678 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 PHACTR3Q96KR7 559 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 ANKZF1Q9H8Y5 726 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 MCM8Q9UJA3 840 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 TPCN1Q9ULQ1 816 aa9.29□□□□□ -0.92
ATG4A-201ENST00000343524 NRAPQ86VF7 1730 aa9.28□□□□□ -0.92
ATG4A-201ENST00000343524 EXOC5O00471 708 aa9.28□□□□□ -0.92
ATG4A-201ENST00000343524 FOXO3O43524 673 aa9.28□□□□□ -0.92
ATG4A-201ENST00000343524 KIF5CO60282 957 aa9.28□□□□□ -0.92
ATG4A-201ENST00000343524 FSBPO95073 299 aa9.28□□□□□ -0.92
ATG4A-201ENST00000343524 LIG3P49916 1009 aa9.28□□□□□ -0.92
ATG4A-201ENST00000343524 MRPL12P52815 198 aaKnown RBP9.28□□□□□ -0.92
ATG4A-201ENST00000343524 PREPLQ4J6C6 727 aaPredicted RBP9.28□□□□□ -0.92
ATG4A-201ENST00000343524 PRPF40BQ6NWY9 871 aaKnown RBP9.28□□□□□ -0.92
ATG4A-201ENST00000343524 FAM173BQ6P4H8 233 aa9.28□□□□□ -0.92
ATG4A-201ENST00000343524 KCNV1Q6PIU1 500 aa9.28□□□□□ -0.92
ATG4A-201ENST00000343524 ANKRD18AQ8IVF6 992 aa9.28□□□□□ -0.92
ATG4A-201ENST00000343524 VSTM4Q8IW00 320 aa9.28□□□□□ -0.92
ATG4A-201ENST00000343524 NECAB1Q8N987 351 aa9.28□□□□□ -0.92
ATG4A-201ENST00000343524 BAG1Q99933 345 aaPredicted RBP9.28□□□□□ -0.92
ATG4A-201ENST00000343524 SDF4Q9BRK5 362 aa9.28□□□□□ -0.92
ATG4A-201ENST00000343524 LLPHQ9BRT6 129 aaKnown RBP9.28□□□□□ -0.92
ATG4A-201ENST00000343524 IL25Q9H293 177 aa9.28□□□□□ -0.92
ATG4A-201ENST00000343524 KIAA1468Q9P260 1216 aa9.28□□□□□ -0.92
ATG4A-201ENST00000343524 C2orf72A6NCS6 295 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 SERPINC1P01008 464 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 CCDC175P0C221 793 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 NECTIN1Q15223 517 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 NBPF9Q3BBW0 867 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 ESCO1Q5FWF5 840 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 NBPF10Q6P3W6 841 aaKnown RBP9.27□□□□□ -0.93
ATG4A-201ENST00000343524 CWC27Q6UX04 472 aaKnown RBP9.27□□□□□ -0.93
ATG4A-201ENST00000343524 FSIP1Q8NA03 581 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 FAM76AQ8TAV0 307 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 KAT2BQ92831 832 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 NAA15Q9BXJ9 866 aaKnown RBP9.27□□□□□ -0.93
ATG4A-201ENST00000343524 TRIM6Q9C030 488 aaPredicted RBP9.27□□□□□ -0.93
ATG4A-201ENST00000343524 CTAGE15A4D2H0 777 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 CHL1O00533 1208 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 CTAGE8P0CG41 777 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 RPS6KB1P23443 525 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 AMPHP49418 695 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 UBASH3AP57075 661 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 MYL5Q02045 173 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 ICA1Q05084 483 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 SCRN1Q12765 414 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 PPFIA1Q13136 1202 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 CTAGE6Q86UF2 777 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 CTAGE4Q8IX94 777 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 TNS4Q8IZW8 715 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 SYTL4Q96C24 671 aaPredicted RBP9.27□□□□□ -0.93
ATG4A-201ENST00000343524 SGSM3Q96HU1 749 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 LARP6Q9BRS8 491 aaKnown RBP9.27□□□□□ -0.93
ATG4A-201ENST00000343524 STK31Q9BXU1 1019 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 EPC1Q9H2F5 836 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 ABCB6Q9NP58 842 aa9.27□□□□□ -0.93
ATG4A-201ENST00000343524 MAP2P11137 1827 aaKnown RBP9.26□□□□□ -0.93
ATG4A-201ENST00000343524 HMOX1P09601 288 aa9.26□□□□□ -0.93
ATG4A-201ENST00000343524 ADCK5Q3MIX3 580 aa9.26□□□□□ -0.93
ATG4A-201ENST00000343524 CFAP100Q494V2 611 aa9.26□□□□□ -0.93
ATG4A-201ENST00000343524 CREB3L3Q68CJ9 461 aa9.26□□□□□ -0.93
ATG4A-201ENST00000343524 SLC4A10Q6U841 1118 aa9.26□□□□□ -0.93
ATG4A-201ENST00000343524 YTHDF3Q7Z739 585 aaKnown RBP9.26□□□□□ -0.93
ATG4A-201ENST00000343524 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.26□□□□□ -0.93
ATG4A-201ENST00000343524 N4BP2L2Q92802 583 aaPredicted RBP9.26□□□□□ -0.93
ATG4A-201ENST00000343524 BRF1Q92994 677 aa9.26□□□□□ -0.93
ATG4A-201ENST00000343524 RNF166Q96A37 237 aaPredicted RBP9.26□□□□□ -0.93
ATG4A-201ENST00000343524 WDR24Q96S15 920 aa9.26□□□□□ -0.93
ATG4A-201ENST00000343524 GOLPH3LQ9H4A5 285 aa9.26□□□□□ -0.93
ATG4A-201ENST00000343524 MYO1AQ9UBC5 1043 aa9.26□□□□□ -0.93
ATG4A-201ENST00000343524 CDHR2Q9BYE9 1310 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 CACNA1FO60840 1977 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 CTAGE9A4FU28 777 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 PES1O00541 588 aaKnown RBP9.25□□□□□ -0.93
ATG4A-201ENST00000343524 FANCGO15287 622 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 PRPF6O94906 941 aaKnown RBP9.25□□□□□ -0.93
ATG4A-201ENST00000343524 SLC3A2P08195 630 aaKnown RBP9.25□□□□□ -0.93
ATG4A-201ENST00000343524 CPA1P15085 419 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 IL13P35225 146 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 ME1P48163 572 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 CDR1P51861 262 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 DRP2Q13474 957 aa9.25□□□□□ -0.93
ATG4A-201ENST00000343524 FMR1NBQ8N0W7 255 aaPredicted RBP9.25□□□□□ -0.93
ATG4A-201ENST00000343524 CCDC148Q8NFR7 591 aa9.25□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms