RNA–Protein interactions for RNA: ENST00000339438.10

CSDE1-202, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,006 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-202ENST00000339438 USPL1Q5W0Q7 1092 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 MMS22LQ6ZRQ5 1243 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 CKAP2LQ8IYA6 745 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 SYNE4Q8N205 404 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 RNF217Q8TC41 542 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 ZNF384Q8TF68 577 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 CLSTN2Q9H4D0 955 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 AKAP2Q9Y2D5 859 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 PHLPP2Q6ZVD8 1323 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 USP34Q70CQ2 3546 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 DMDP11532 3685 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 AK2P54819 239 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 MAP9Q49MG5 647 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 TMCO3Q6UWJ1 677 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 FAXDC2Q96IV6 333 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 PSMD1Q99460 953 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 DNAJC25Q9H1X3 360 aa6.5□□□□□ -1.37
CSDE1-202ENST00000339438 EFCAB8A8MWE9 144 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 C21orf2O43822 256 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 GNAI1P63096 354 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 FILIP1Q7Z7B0 1213 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 PLBD2Q8NHP8 589 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 PGBD1Q96JS3 809 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 SRRTQ9BXP5 876 aaKnown RBP6.49□□□□□ -1.37
CSDE1-202ENST00000339438 TEX13AQ9BXU3 409 aaPredicted RBP6.49□□□□□ -1.37
CSDE1-202ENST00000339438 NUP62CLQ9H1M0 184 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 CCDC9Q9Y3X0 531 aaKnown RBP6.49□□□□□ -1.37
CSDE1-202ENST00000339438 KIF2AO00139 706 aaPredicted RBP6.49□□□□□ -1.37
CSDE1-202ENST00000339438 NR1I2O75469 434 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 RASEFQ8IZ41 740 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 BRIP1Q9BX63 1249 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 VPS33BQ9H267 617 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 HYPKQ9NX55 129 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 CWC15Q9P013 229 aaKnown RBP6.49□□□□□ -1.37
CSDE1-202ENST00000339438 YDJCA8MPS7 323 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 ZNF165P49910 485 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 SNW1Q13573 536 aaKnown RBP6.49□□□□□ -1.37
CSDE1-202ENST00000339438 NBPF20Q3BBV1 942 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 CCDC91Q7Z6B0 441 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 RPAP2Q8IXW5 612 aaPredicted RBP6.49□□□□□ -1.37
CSDE1-202ENST00000339438 PPM1EQ8WY54 764 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 FAM212AQ96EL1 285 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 CCDC34Q96HJ3 373 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 DACT1Q9NYF0 836 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 SNX14Q9Y5W7 946 aa6.49□□□□□ -1.37
CSDE1-202ENST00000339438 NEURL1BA8MQ27 555 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 TCIRG1Q13488 830 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 COL9A3Q14050 684 aaPredicted RBP6.48□□□□□ -1.37
CSDE1-202ENST00000339438 TSHZ3Q63HK5 1081 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 CASC1Q6TDU7 716 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 CWC27Q6UX04 472 aaKnown RBP6.48□□□□□ -1.37
CSDE1-202ENST00000339438 CNKSR2Q8WXI2 1034 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 CHPF2Q9P2E5 772 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 NEDD4P46934 1319 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 ANKRD65E5RJM6 399 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 CABP4P57796 275 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 CRAMP1Q96RY5 1269 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 RAI14Q9P0K7 980 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 TTC41PQ6P2S7 1318 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 N4BP1O75113 896 aaKnown RBP6.48□□□□□ -1.37
CSDE1-202ENST00000339438 TPRNQ4KMQ1 711 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 RPAINQ86UA6 219 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 PDRG1Q9NUG6 133 aa6.48□□□□□ -1.37
CSDE1-202ENST00000339438 IVLP07476 585 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 LMAN1P49257 510 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 MAP3K9P80192 1104 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 ATG9AQ7Z3C6 839 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 XAGE2Q96GT9 111 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 LARP6Q9BRS8 491 aaKnown RBP6.47□□□□□ -1.37
CSDE1-202ENST00000339438 METTL22Q9BUU2 404 aaPredicted RBP6.47□□□□□ -1.37
CSDE1-202ENST00000339438 STAP2Q9UGK3 403 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 EIF2S2P20042 333 aaKnown RBP6.47□□□□□ -1.37
CSDE1-202ENST00000339438 GJB2P29033 226 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 ETF1P62495 437 aaKnown RBP6.47□□□□□ -1.37
CSDE1-202ENST00000339438 BEND6Q5SZJ8 279 aaPredicted RBP6.47□□□□□ -1.37
CSDE1-202ENST00000339438 VPS53Q5VIR6 699 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 FAM173BQ6P4H8 233 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 DRC7Q8IY82 874 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 PARD6BQ9BYG5 372 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 A1CFQ9NQ94 594 aaKnown RBP6.47□□□□□ -1.37
CSDE1-202ENST00000339438 SGSM2O43147 1006 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 USP5P45974 858 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 GPS2Q13227 327 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 CDC37L1Q7L3B6 337 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 TMEM139Q8IV31 216 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 HNRNPLLQ8WVV9 542 aaKnown RBP6.47□□□□□ -1.37
CSDE1-202ENST00000339438 KCNB2Q92953 911 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 KIFC2Q96AC6 838 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 LSG1Q9H089 658 aaKnown RBP6.47□□□□□ -1.37
CSDE1-202ENST00000339438 TNMDQ9H2S6 317 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 TRANK1O15050 2925 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 CCDC196A0A1B0GTZ2 297 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 ANKRD33BA6NCL7 494 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 APOBRQ0VD83 1088 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 TADA2BQ86TJ2 420 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 EFCAB13Q8IY85 973 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 GPR161Q8N6U8 529 aaKnown RBP6.47□□□□□ -1.37
CSDE1-202ENST00000339438 CLIC6Q96NY7 704 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 HSD3B7Q9H2F3 369 aa6.47□□□□□ -1.37
CSDE1-202ENST00000339438 DPEP1P16444 411 aa6.46□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms