RNA–Protein interactions for RNA: ENST00000324771.12

DDR1-223, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 5 BASIC

Gene DDR1, Length 4,148 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-223	ENST00000324771	LLPH	Q9BRT6	129 aa	Known RBP	13.52	□□□□□ -0.25
DDR1-223	ENST00000324771	CLIC4	Q9Y696	253 aa		13.52	□□□□□ -0.25
DDR1-223	ENST00000324771	TNFRSF11A	Q9Y6Q6	616 aa	Predicted RBP	13.52	□□□□□ -0.25
DDR1-223	ENST00000324771	TNKS	O95271	1327 aa		13.52	□□□□□ -0.25
DDR1-223	ENST00000324771	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.52	□□□□□ -0.25
DDR1-223	ENST00000324771	KRT2	P35908	639 aa		13.52	□□□□□ -0.25
DDR1-223	ENST00000324771	ZFYVE27	Q5T4F4	411 aa		13.52	□□□□□ -0.25
DDR1-223	ENST00000324771	JAKMIP3	Q5VZ66	844 aa		13.52	□□□□□ -0.25
DDR1-223	ENST00000324771	NSUN7	Q8NE18	718 aa	Known RBP	13.52	□□□□□ -0.25
DDR1-223	ENST00000324771	SEPT11	Q9NVA2	429 aa	Known RBP	13.52	□□□□□ -0.25
DDR1-223	ENST00000324771	CYP2E1	P05181	493 aa	Predicted RBP	13.51	□□□□□ -0.25
DDR1-223	ENST00000324771	CYP19A1	P11511	503 aa	Predicted RBP	13.51	□□□□□ -0.25
DDR1-223	ENST00000324771	MTIF2	P46199	727 aa	Known RBP	13.51	□□□□□ -0.25
DDR1-223	ENST00000324771	CHMP4BP1	P59074	171 aa		13.51	□□□□□ -0.25
DDR1-223	ENST00000324771	WDR78	Q5VTH9	848 aa		13.51	□□□□□ -0.25
DDR1-223	ENST00000324771	TRMT44	Q8IYL2	757 aa	Known RBP	13.51	□□□□□ -0.25
DDR1-223	ENST00000324771	KCNH3	Q9ULD8	1083 aa		13.51	□□□□□ -0.25
DDR1-223	ENST00000324771	RNF216	Q9NWF9	866 aa	Predicted RBP	13.51	□□□□□ -0.25
DDR1-223	ENST00000324771	PPL	O60437	1756 aa		13.51	□□□□□ -0.25
DDR1-223	ENST00000324771	DLC1	Q96QB1	1528 aa		13.51	□□□□□ -0.25
DDR1-223	ENST00000324771	TRIM47	Q96LD4	638 aa		13.51	□□□□□ -0.25
DDR1-223	ENST00000324771	CLSTN2	Q9H4D0	955 aa		13.51	□□□□□ -0.25
DDR1-223	ENST00000324771	ADD2	P35612	726 aa		13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	KIF18A	Q8NI77	898 aa		13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	QTRT2	Q9H974	415 aa	Known RBP	13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	TNS3	Q68CZ2	1445 aa		13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	CIAO1	O76071	339 aa		13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	TOB2	Q14106	344 aa	Predicted RBP	13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	ATG9A	Q7Z3C6	839 aa		13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	CELF1	Q92879	486 aa	Known RBP	13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	ARGLU1	Q9NWB6	273 aa	Predicted RBP	13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	ZSWIM5	Q9P217	1185 aa		13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	DIP2A	Q14689	1571 aa		13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	LRMP	Q12912	555 aa		13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	TCERG1L	Q5VWI1	586 aa		13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	KIAA1328	Q86T90	577 aa		13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	KIAA0825	Q8IV33	1275 aa		13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	PCDHA7	Q9UN72	937 aa		13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	PALLD	Q8WX93	1383 aa		13.5	□□□□□ -0.25
DDR1-223	ENST00000324771	DEXI	O95424	95 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	CBX1	P83916	185 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	ZNF274	Q96GC6	653 aa	Predicted RBP	13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	DEPDC5	O75140	1603 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	COBL	O75128	1261 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	ASIC1	P78348	528 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	TMEM266	Q2M3C6	531 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	TEX35	Q5T0J7	233 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	APOA5	Q6Q788	366 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	UBXN4	Q92575	508 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	KIAA1210	Q9ULL0	1709 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	COL3A1	P02461	1466 aa	Predicted RBP	13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	KIF4B	Q2VIQ3	1234 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	CCDC70	Q6NSX1	233 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	FANCB	Q8NB91	859 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	FBXO18	Q8NFZ0	1043 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	PNOC	Q13519	176 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	TMEM132A	Q24JP5	1023 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	DPP8	Q6V1X1	898 aa	Predicted RBP	13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	CALML4	Q96GE6	196 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	MMRN2	Q9H8L6	949 aa		13.49	□□□□□ -0.25
DDR1-223	ENST00000324771	TECPR2	O15040	1411 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	SPDYE4	A6NLX3	237 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	GNG11	P61952	73 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	NR5A1	Q13285	461 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	UBE3C	Q15386	1083 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	PDCL2	Q8N4E4	241 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	OGFOD1	Q8N543	542 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	FAM170A	A1A519	330 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	CCT6A	P40227	531 aa	Known RBP	13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	STOX1	Q6ZVD7	989 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	RBM17	Q96I25	401 aa	Known RBP	13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	ISCA1	Q9BUE6	129 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	GPR108	Q9NPR9	543 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	DNAI1	Q9UI46	699 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	ZNF804B	A4D1E1	1349 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	NDUFA8	P51970	172 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	WDR66	Q8TBY9	1149 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	MAP7D2	Q96T17	732 aa		13.48	□□□□□ -0.25
DDR1-223	ENST00000324771	RTL9	Q8NET4	1388 aa		13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	CEMIP	Q8WUJ3	1361 aa		13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	IBSP	P21815	317 aa	Predicted RBP	13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	CDC25A	P30304	524 aa		13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	SNW1	Q13573	536 aa	Known RBP	13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	RASGRP4	Q8TDF6	673 aa		13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	CCDC12	Q8WUD4	166 aa	Predicted RBP	13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	BLZF1	Q9H2G9	400 aa		13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	PKD2L1	Q9P0L9	805 aa		13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	TTF2	Q9UNY4	1162 aa	Known RBP	13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	SAMM50	Q9Y512	469 aa		13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	FSD2	A1L4K1	749 aa		13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	PRDX5	P30044	214 aa		13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	GNAQ	P50148	359 aa		13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	RAD51AP2	Q09MP3	1159 aa		13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	TDRD12	Q587J7	1177 aa	Known RBP	13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	CACNA2D4	Q7Z3S7	1137 aa		13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	FCHSD1	Q86WN1	690 aa		13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	DYNLL2	Q96FJ2	89 aa		13.47	□□□□□ -0.25
DDR1-223	ENST00000324771	RILPL1	Q5EBL4	403 aa		13.47	□□□□□ -0.25

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