RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 FAM217BQ9NTX9 383 aaPredicted RBP27.86■■■□□ 2.05
TRIM54-201ENST00000296098 CCNL1Q9UK58 526 aaPredicted RBP27.86■■■□□ 2.05
TRIM54-201ENST00000296098 RANBP6O60518 1105 aaKnown RBP27.85■■■□□ 2.05
TRIM54-201ENST00000296098 ZNF165P49910 485 aa27.85■■■□□ 2.05
TRIM54-201ENST00000296098 KIAA2012Q0VF49 1180 aa27.85■■■□□ 2.05
TRIM54-201ENST00000296098 KRT40Q6A162 431 aa27.85■■■□□ 2.05
TRIM54-201ENST00000296098 TDRD7Q8NHU6 1098 aaKnown RBP27.85■■■□□ 2.05
TRIM54-201ENST00000296098 FAM84BQ96KN1 310 aaPredicted RBP27.85■■■□□ 2.05
TRIM54-201ENST00000296098 NLRP3Q96P20 1036 aa27.85■■■□□ 2.05
TRIM54-201ENST00000296098 TAF1LQ8IZX4 1826 aa27.85■■■□□ 2.05
TRIM54-201ENST00000296098 SPTLC2O15270 562 aa27.85■■■□□ 2.05
TRIM54-201ENST00000296098 USP21Q9UK80 565 aa27.85■■■□□ 2.05
TRIM54-201ENST00000296098 LY75O60449 1722 aa27.85■■■□□ 2.05
TRIM54-201ENST00000296098 STX1AQ16623 288 aa27.84■■■□□ 2.05
TRIM54-201ENST00000296098 ANO1Q5XXA6 986 aa27.84■■■□□ 2.05
TRIM54-201ENST00000296098 MPNDQ8N594 471 aa27.84■■■□□ 2.05
TRIM54-201ENST00000296098 ERICH2A1L162 156 aa27.84■■■□□ 2.05
TRIM54-201ENST00000296098 SEMA3EO15041 775 aa27.84■■■□□ 2.05
TRIM54-201ENST00000296098 RPS8P62241 208 aaKnown RBP27.84■■■□□ 2.05
TRIM54-201ENST00000296098 TRIM29Q14134 588 aa27.84■■■□□ 2.05
TRIM54-201ENST00000296098 WTAPQ15007 396 aa27.84■■■□□ 2.05
TRIM54-201ENST00000296098 FMR1NBQ8N0W7 255 aaPredicted RBP27.84■■■□□ 2.05
TRIM54-201ENST00000296098 SDR42E1Q8WUS8 393 aa27.84■■■□□ 2.05
TRIM54-201ENST00000296098 RIOK1Q9BRS2 568 aaKnown RBP27.84■■■□□ 2.05
TRIM54-201ENST00000296098 RTCBQ9Y3I0 505 aaKnown RBP27.84■■■□□ 2.05
TRIM54-201ENST00000296098 ANAPC4Q9UJX5 808 aa27.83■■■□□ 2.05
TRIM54-201ENST00000296098 SSRP1Q08945 709 aaKnown RBP27.82■■■□□ 2.04
TRIM54-201ENST00000296098 FMNL1O95466 1100 aaPredicted RBP27.82■■■□□ 2.04
TRIM54-201ENST00000296098 GNL2Q13823 731 aaKnown RBP27.82■■■□□ 2.04
TRIM54-201ENST00000296098 FBXO33Q7Z6M2 555 aa27.82■■■□□ 2.04
TRIM54-201ENST00000296098 ZKSCAN3Q9BRR0 538 aa27.82■■■□□ 2.04
TRIM54-201ENST00000296098 SLC26A6Q9BXS9 759 aa27.82■■■□□ 2.04
TRIM54-201ENST00000296098 MAST2Q6P0Q8 1798 aa27.81■■■□□ 2.04
TRIM54-201ENST00000296098 DUOX1Q9NRD9 1551 aa27.81■■■□□ 2.04
TRIM54-201ENST00000296098 TPTE2Q6XPS3 522 aa27.81■■■□□ 2.04
TRIM54-201ENST00000296098 STK11IPQ8N1F8 1099 aa27.81■■■□□ 2.04
TRIM54-201ENST00000296098 ANKRD2Q9GZV1 360 aa27.81■■■□□ 2.04
TRIM54-201ENST00000296098 PDS5AQ29RF7 1337 aaKnown RBP27.81■■■□□ 2.04
TRIM54-201ENST00000296098 GOLGA6L6A8MZA4 724 aa27.8■■■□□ 2.04
TRIM54-201ENST00000296098 IFNAR1P17181 557 aa27.8■■■□□ 2.04
TRIM54-201ENST00000296098 RTN1Q16799 776 aa27.8■■■□□ 2.04
TRIM54-201ENST00000296098 TMTC2Q8N394 836 aa27.8■■■□□ 2.04
TRIM54-201ENST00000296098 WASF1Q92558 559 aa27.8■■■□□ 2.04
TRIM54-201ENST00000296098 ZNF830Q96NB3 372 aaPredicted RBP27.8■■■□□ 2.04
TRIM54-201ENST00000296098 A0A1B0GVL5 298 aa27.8■■■□□ 2.04
TRIM54-201ENST00000296098 MINDY4BA8MYZ0 360 aa27.8■■■□□ 2.04
TRIM54-201ENST00000296098 TPM3P06753 285 aa27.8■■■□□ 2.04
TRIM54-201ENST00000296098 KLRK1P26718 216 aa27.8■■■□□ 2.04
TRIM54-201ENST00000296098 RCAN1P53805 252 aa27.8■■■□□ 2.04
TRIM54-201ENST00000296098 UBAC1Q9BSL1 405 aa27.8■■■□□ 2.04
TRIM54-201ENST00000296098 TTC12Q9H892 705 aaPredicted RBP27.8■■■□□ 2.04
TRIM54-201ENST00000296098 TNRC6CQ9HCJ0 1690 aaKnown RBP27.8■■■□□ 2.04
TRIM54-201ENST00000296098 SPATA31A6Q5VVP1 1343 aa27.8■■■□□ 2.04
TRIM54-201ENST00000296098 NDUFA8P51970 172 aa27.79■■■□□ 2.04
TRIM54-201ENST00000296098 FAM182BQ5T319 152 aa27.79■■■□□ 2.04
TRIM54-201ENST00000296098 C11orf57Q6ZUT1 292 aaPredicted RBP27.79■■■□□ 2.04
TRIM54-201ENST00000296098 ESR2Q92731 530 aa27.79■■■□□ 2.04
TRIM54-201ENST00000296098 BRIP1Q9BX63 1249 aa27.79■■■□□ 2.04
TRIM54-201ENST00000296098 DYNLL1P63167 89 aaKnown RBP27.78■■■□□ 2.04
TRIM54-201ENST00000296098 SLC39A14Q15043 492 aa27.78■■■□□ 2.04
TRIM54-201ENST00000296098 ARHGEF1Q92888 912 aaKnown RBP27.78■■■□□ 2.04
TRIM54-201ENST00000296098 ANO8Q9HCE9 1232 aaPredicted RBP27.78■■■□□ 2.04
TRIM54-201ENST00000296098 TAOK2Q9UL54 1235 aa27.78■■■□□ 2.04
TRIM54-201ENST00000296098 BAZ2AQ9UIF9 1905 aaKnown RBP27.78■■■□□ 2.04
TRIM54-201ENST00000296098 U2AF2P26368 475 aaKnown RBP eCLIP27.77■■■□□ 2.04
TRIM54-201ENST00000296098 AMIGO3Q86WK7 504 aa27.77■■■□□ 2.04
TRIM54-201ENST00000296098 TRIM22Q8IYM9 498 aa27.77■■■□□ 2.04
TRIM54-201ENST00000296098 SPC24Q8NBT2 197 aa27.77■■■□□ 2.04
TRIM54-201ENST00000296098 ZNF384Q8TF68 577 aa27.77■■■□□ 2.04
TRIM54-201ENST00000296098 ANO10Q9NW15 660 aa27.77■■■□□ 2.04
TRIM54-201ENST00000296098 SBF2Q86WG5 1849 aa27.77■■■□□ 2.04
TRIM54-201ENST00000296098 CCDC24Q8N4L8 307 aa27.77■■■□□ 2.04
TRIM54-201ENST00000296098 CCDC196A0A1B0GTZ2 297 aa27.76■■■□□ 2.03
TRIM54-201ENST00000296098 HIBADHP31937 336 aaKnown RBP27.76■■■□□ 2.03
TRIM54-201ENST00000296098 IQCB1Q15051 598 aa27.76■■■□□ 2.03
TRIM54-201ENST00000296098 AXDND1Q5T1B0 1012 aaPredicted RBP27.76■■■□□ 2.03
TRIM54-201ENST00000296098 ZNF654Q8IZM8 581 aa27.76■■■□□ 2.03
TRIM54-201ENST00000296098 PIBF1Q8WXW3 757 aa27.76■■■□□ 2.03
TRIM54-201ENST00000296098 SDF4Q9BRK5 362 aa27.76■■■□□ 2.03
TRIM54-201ENST00000296098 PLA2G4DQ86XP0 818 aa27.75■■■□□ 2.03
TRIM54-201ENST00000296098 LAMB1P07942 1786 aa27.75■■■□□ 2.03
TRIM54-201ENST00000296098 TNKSO95271 1327 aa27.75■■■□□ 2.03
TRIM54-201ENST00000296098 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP27.75■■■□□ 2.03
TRIM54-201ENST00000296098 GOLGA6L19H0YKK7 550 aa27.75■■■□□ 2.03
TRIM54-201ENST00000296098 ZNF75DP51815 510 aa27.75■■■□□ 2.03
TRIM54-201ENST00000296098 NSUN4Q96CB9 384 aaKnown RBP27.75■■■□□ 2.03
TRIM54-201ENST00000296098 GNL3Q9BVP2 549 aaKnown RBP eCLIP27.75■■■□□ 2.03
TRIM54-201ENST00000296098 TRIM5Q9C035 493 aa27.75■■■□□ 2.03
TRIM54-201ENST00000296098 MROH7-TTC4A0A0A0MT08 1334 aa27.74■■■□□ 2.03
TRIM54-201ENST00000296098 UBE2Q2LH0YL09 131 aa27.74■■■□□ 2.03
TRIM54-201ENST00000296098 CMA1P23946 247 aa27.74■■■□□ 2.03
TRIM54-201ENST00000296098 JMYQ8N9B5 988 aa27.74■■■□□ 2.03
TRIM54-201ENST00000296098 TFCP2L1Q9NZI6 479 aa27.74■■■□□ 2.03
TRIM54-201ENST00000296098 NPHP1O15259 732 aa27.74■■■□□ 2.03
TRIM54-201ENST00000296098 PPP6R2O75170 966 aa27.74■■■□□ 2.03
TRIM54-201ENST00000296098 SEC23AQ15436 765 aa27.74■■■□□ 2.03
TRIM54-201ENST00000296098 ARHGAP30Q7Z6I6 1101 aaPredicted RBP27.74■■■□□ 2.03
TRIM54-201ENST00000296098 MECOMQ03112 1051 aa27.73■■■□□ 2.03
TRIM54-201ENST00000296098 NBPF11Q86T75 865 aa27.73■■■□□ 2.03
TRIM54-201ENST00000296098 CEP57L1Q8IYX8 460 aa27.73■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms