RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 MROH7-TTC4A0A0A0MT08 1334 aa23.3■■□□□ 1.32
VPS53-201ENST00000291074 TERF1P54274 439 aa23.3■■□□□ 1.32
VPS53-201ENST00000291074 KRT23Q9C075 422 aa23.3■■□□□ 1.32
VPS53-201ENST00000291074 RAI14Q9P0K7 980 aa23.3■■□□□ 1.32
VPS53-201ENST00000291074 ZNF804BA4D1E1 1349 aa23.3■■□□□ 1.32
VPS53-201ENST00000291074 UQCRHLA0A096LP55 91 aa23.3■■□□□ 1.32
VPS53-201ENST00000291074 GOLGA6L19H0YKK7 550 aa23.3■■□□□ 1.32
VPS53-201ENST00000291074 WDHD1O75717 1129 aaPredicted RBP23.3■■□□□ 1.32
VPS53-201ENST00000291074 UQCRHP07919 91 aa23.3■■□□□ 1.32
VPS53-201ENST00000291074 GNAT2P19087 354 aa23.3■■□□□ 1.32
VPS53-201ENST00000291074 AXDND1Q5T1B0 1012 aaPredicted RBP23.3■■□□□ 1.32
VPS53-201ENST00000291074 CLEC4GQ6UXB4 293 aa23.3■■□□□ 1.32
VPS53-201ENST00000291074 KIAA1524Q8TCG1 905 aa23.3■■□□□ 1.32
VPS53-201ENST00000291074 STAG1Q8WVM7 1258 aa23.3■■□□□ 1.32
VPS53-201ENST00000291074 CAVIN2O95810 425 aa23.29■■□□□ 1.32
VPS53-201ENST00000291074 TBC1D9BQ66K14 1250 aa23.29■■□□□ 1.32
VPS53-201ENST00000291074 CELF1Q92879 486 aaKnown RBP23.29■■□□□ 1.32
VPS53-201ENST00000291074 BAZ2AQ9UIF9 1905 aaKnown RBP23.29■■□□□ 1.32
VPS53-201ENST00000291074 GNL2Q13823 731 aaKnown RBP23.29■■□□□ 1.32
VPS53-201ENST00000291074 LRMPQ12912 555 aa23.28■■□□□ 1.32
VPS53-201ENST00000291074 DHX40Q8IX18 779 aaKnown RBP23.28■■□□□ 1.32
VPS53-201ENST00000291074 SPTLC3Q9NUV7 552 aa23.28■■□□□ 1.32
VPS53-201ENST00000291074 ANO10Q9NW15 660 aa23.28■■□□□ 1.32
VPS53-201ENST00000291074 CACNA1SQ13698 1873 aa23.28■■□□□ 1.32
VPS53-201ENST00000291074 MINDY4BA8MYZ0 360 aa23.28■■□□□ 1.32
VPS53-201ENST00000291074 TPM3P06753 285 aa23.28■■□□□ 1.32
VPS53-201ENST00000291074 GUCY1A2P33402 732 aa23.28■■□□□ 1.32
VPS53-201ENST00000291074 CMTR1Q8N1G2 835 aaKnown RBP23.28■■□□□ 1.32
VPS53-201ENST00000291074 CCDC24Q8N4L8 307 aa23.28■■□□□ 1.32
VPS53-201ENST00000291074 ZMYND15Q9H091 742 aa23.28■■□□□ 1.32
VPS53-201ENST00000291074 BCL2L12Q9HB09 334 aa23.28■■□□□ 1.32
VPS53-201ENST00000291074 GTF2E1P29083 439 aaPredicted RBP23.27■■□□□ 1.32
VPS53-201ENST00000291074 SF3B3Q15393 1217 aaKnown RBP23.27■■□□□ 1.32
VPS53-201ENST00000291074 CCDC82Q8N4S0 544 aa23.27■■□□□ 1.32
VPS53-201ENST00000291074 SRP68Q9UHB9 627 aaKnown RBP23.27■■□□□ 1.32
VPS53-201ENST00000291074 MINPP1Q9UNW1 487 aa23.27■■□□□ 1.32
VPS53-201ENST00000291074 PFKFB1P16118 471 aa23.27■■□□□ 1.32
VPS53-201ENST00000291074 KLRK1P26718 216 aa23.27■■□□□ 1.32
VPS53-201ENST00000291074 PPARAQ07869 468 aa23.27■■□□□ 1.32
VPS53-201ENST00000291074 SLC39A14Q15043 492 aa23.27■■□□□ 1.32
VPS53-201ENST00000291074 SSRP1Q08945 709 aaKnown RBP23.26■■□□□ 1.31
VPS53-201ENST00000291074 WTAPQ15007 396 aa23.26■■□□□ 1.31
VPS53-201ENST00000291074 BSDC1Q9NW68 430 aaPredicted RBP23.26■■□□□ 1.31
VPS53-201ENST00000291074 SCN7AQ01118 1682 aa23.26■■□□□ 1.31
VPS53-201ENST00000291074 MYH2Q9UKX2 1941 aa23.26■■□□□ 1.31
VPS53-201ENST00000291074 MAGEB6P1A0A0J9YX57 407 aa23.26■■□□□ 1.31
VPS53-201ENST00000291074 BECN2A8MW95 431 aa23.26■■□□□ 1.31
VPS53-201ENST00000291074 AOPEPQ8N6M6 819 aa23.26■■□□□ 1.31
VPS53-201ENST00000291074 C8orf37Q96NL8 207 aa23.26■■□□□ 1.31
VPS53-201ENST00000291074 CLIP2Q9UDT6 1046 aa23.26■■□□□ 1.31
VPS53-201ENST00000291074 ZNF202O95125 648 aa23.26■■□□□ 1.31
VPS53-201ENST00000291074 DYNLL1P63167 89 aaKnown RBP23.26■■□□□ 1.31
VPS53-201ENST00000291074 TRIM29Q14134 588 aa23.26■■□□□ 1.31
VPS53-201ENST00000291074 FMNL1O95466 1100 aaPredicted RBP23.25■■□□□ 1.31
VPS53-201ENST00000291074 UBE4AQ14139 1066 aa23.25■■□□□ 1.31
VPS53-201ENST00000291074 DPCR1Q3MIW9 517 aa23.25■■□□□ 1.31
VPS53-201ENST00000291074 CCDC144BQ3MJ40 725 aa23.25■■□□□ 1.31
VPS53-201ENST00000291074 GNL3LQ9NVN8 582 aaKnown RBP23.25■■□□□ 1.31
VPS53-201ENST00000291074 RTN1Q16799 776 aa23.25■■□□□ 1.31
VPS53-201ENST00000291074 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.25■■□□□ 1.31
VPS53-201ENST00000291074 CEP57L1Q8IYX8 460 aa23.25■■□□□ 1.31
VPS53-201ENST00000291074 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.25■■□□□ 1.31
VPS53-201ENST00000291074 KIAA1468Q9P260 1216 aa23.25■■□□□ 1.31
VPS53-201ENST00000291074 ZNF831Q5JPB2 1677 aa23.25■■□□□ 1.31
VPS53-201ENST00000291074 CYP2D7A0A087X1C5 515 aa23.24■■□□□ 1.31
VPS53-201ENST00000291074 BIN1O00499 593 aa23.24■■□□□ 1.31
VPS53-201ENST00000291074 PTPAQ15257 358 aa23.24■■□□□ 1.31
VPS53-201ENST00000291074 ZNF384Q8TF68 577 aa23.24■■□□□ 1.31
VPS53-201ENST00000291074 FAM84BQ96KN1 310 aaPredicted RBP23.24■■□□□ 1.31
VPS53-201ENST00000291074 STK36Q9NRP7 1315 aa23.24■■□□□ 1.31
VPS53-201ENST00000291074 IFNAR1P17181 557 aa23.24■■□□□ 1.31
VPS53-201ENST00000291074 CMA1P23946 247 aa23.24■■□□□ 1.31
VPS53-201ENST00000291074 U2AF2P26368 475 aaKnown RBP eCLIP23.24■■□□□ 1.31
VPS53-201ENST00000291074 SART3Q15020 963 aaKnown RBP23.24■■□□□ 1.31
VPS53-201ENST00000291074 NUP133Q8WUM0 1156 aa23.24■■□□□ 1.31
VPS53-201ENST00000291074 MAP3K14Q99558 947 aa23.24■■□□□ 1.31
VPS53-201ENST00000291074 RIOK1Q9BRS2 568 aaKnown RBP23.24■■□□□ 1.31
VPS53-201ENST00000291074 KCNJ14Q9UNX9 436 aa23.24■■□□□ 1.31
VPS53-201ENST00000291074 CAVIN4Q5BKX8 364 aa23.23■■□□□ 1.31
VPS53-201ENST00000291074 FAM182BQ5T319 152 aa23.23■■□□□ 1.31
VPS53-201ENST00000291074 SARM1Q6SZW1 724 aa23.23■■□□□ 1.31
VPS53-201ENST00000291074 CLIC6Q96NY7 704 aa23.23■■□□□ 1.31
VPS53-201ENST00000291074 CNTNAP4Q9C0A0 1308 aa23.23■■□□□ 1.31
VPS53-201ENST00000291074 ERICH2A1L162 156 aa23.22■■□□□ 1.31
VPS53-201ENST00000291074 SHC4Q6S5L8 630 aa23.22■■□□□ 1.31
VPS53-201ENST00000291074 RGS22Q8NE09 1264 aa23.22■■□□□ 1.31
VPS53-201ENST00000291074 NGLY1Q96IV0 654 aa23.22■■□□□ 1.31
VPS53-201ENST00000291074 MYH6P13533 1939 aa23.22■■□□□ 1.31
VPS53-201ENST00000291074 MYH13Q9UKX3 1938 aa23.22■■□□□ 1.31
VPS53-201ENST00000291074 SLC3A2P08195 630 aaKnown RBP23.22■■□□□ 1.31
VPS53-201ENST00000291074 ZNF654Q8IZM8 581 aa23.22■■□□□ 1.31
VPS53-201ENST00000291074 RNF41Q9H4P4 317 aaPredicted RBP23.22■■□□□ 1.31
VPS53-201ENST00000291074 NID2Q14112 1375 aa23.22■■□□□ 1.31
VPS53-201ENST00000291074 BTBD18B2RXH4 712 aa23.21■■□□□ 1.31
VPS53-201ENST00000291074 RBM10P98175 930 aaKnown RBP23.21■■□□□ 1.31
VPS53-201ENST00000291074 AMIGO3Q86WK7 504 aa23.21■■□□□ 1.31
VPS53-201ENST00000291074 UBAC1Q9BSL1 405 aa23.21■■□□□ 1.31
VPS53-201ENST00000291074 NBPF11Q86T75 865 aa23.21■■□□□ 1.31
VPS53-201ENST00000291074 CACTINQ8WUQ7 758 aaKnown RBP23.21■■□□□ 1.31
VPS53-201ENST00000291074 TNKSO95271 1327 aa23.2■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms