RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 KCNJ14Q9UNX9 436 aa12.87□□□□□ -0.35
USP53-201ENST00000274030 NDC80O14777 642 aa12.87□□□□□ -0.35
USP53-201ENST00000274030 PER1O15534 1290 aaPredicted RBP12.87□□□□□ -0.35
USP53-201ENST00000274030 VAV2P52735 878 aa12.87□□□□□ -0.35
USP53-201ENST00000274030 CPXCR1Q8N123 301 aa12.87□□□□□ -0.35
USP53-201ENST00000274030 FNBP1Q96RU3 617 aa12.87□□□□□ -0.35
USP53-201ENST00000274030 B4DLN1 442 aa12.87□□□□□ -0.35
USP53-201ENST00000274030 PDE8AO60658 829 aa12.87□□□□□ -0.35
USP53-201ENST00000274030 UBLCP1Q8WVY7 318 aaPredicted RBP12.87□□□□□ -0.35
USP53-201ENST00000274030 MYCLP12524 364 aaPredicted RBP12.86□□□□□ -0.35
USP53-201ENST00000274030 ZAP70P43403 619 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 DYMQ7RTS9 669 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 DNAJC10Q8IXB1 793 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 GTF3C6Q969F1 213 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 TRIM35Q9UPQ4 493 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 JAK2O60674 1132 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 USH1GQ495M9 461 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 U2AF2P26368 475 aaKnown RBP eCLIP12.86□□□□□ -0.352e-7■■■■□ 21.9
USP53-201ENST00000274030 CPLX4Q7Z7G2 160 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 TMEM87BQ96K49 555 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 TXNDC16Q9P2K2 825 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 EPB41P11171 864 aaKnown RBP12.86□□□□□ -0.35
USP53-201ENST00000274030 PLCD1P51178 756 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 UAP1Q16222 522 aaPredicted RBP12.86□□□□□ -0.35
USP53-201ENST00000274030 NCAPH2Q6IBW4 605 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 TIGD1Q96MW7 591 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 NUP160Q12769 1436 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 MAPKAPK5Q8IW41 473 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 CSGALNACT2Q8N6G5 542 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 LRRC45Q96CN5 670 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 GGA1Q9UJY5 639 aa12.86□□□□□ -0.35
USP53-201ENST00000274030 YTHDC2Q9H6S0 1430 aaKnown RBP12.85□□□□□ -0.35
USP53-201ENST00000274030 SGSM2O43147 1006 aa12.85□□□□□ -0.35
USP53-201ENST00000274030 GADD45BO75293 160 aaPredicted RBP12.85□□□□□ -0.35
USP53-201ENST00000274030 SPOPO43791 374 aa12.85□□□□□ -0.35
USP53-201ENST00000274030 PSMC4P43686 418 aa12.85□□□□□ -0.35
USP53-201ENST00000274030 BEND3Q5T5X7 828 aa12.85□□□□□ -0.35
USP53-201ENST00000274030 MICALL1Q8N3F8 863 aa12.85□□□□□ -0.35
USP53-201ENST00000274030 PROCA1Q8NCQ7 364 aaPredicted RBP12.85□□□□□ -0.35
USP53-201ENST00000274030 PSMB7Q99436 277 aa12.85□□□□□ -0.35
USP53-201ENST00000274030 EVCP57679 992 aa12.85□□□□□ -0.35
USP53-201ENST00000274030 PPP2R3AQ06190 1150 aa12.85□□□□□ -0.35
USP53-201ENST00000274030 TAF12Q16514 161 aa12.85□□□□□ -0.35
USP53-201ENST00000274030 FAM98CQ17RN3 349 aaKnown RBP12.85□□□□□ -0.35
USP53-201ENST00000274030 CALCOCO2Q13137 446 aa12.85□□□□□ -0.35
USP53-201ENST00000274030 FAM47AQ5JRC9 791 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 TTC38Q5R3I4 469 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 MSL1Q68DK7 614 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 RAB3IL1Q8TBN0 382 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 ZNF496Q96IT1 587 aaPredicted RBP12.84□□□□□ -0.35
USP53-201ENST00000274030 CHL1O00533 1208 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 RASA3Q14644 834 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 UTP14CQ5TAP6 766 aaKnown RBP12.84□□□□□ -0.35
USP53-201ENST00000274030 CDC37L1Q7L3B6 337 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 SLC52A2Q9HAB3 445 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 ZNF532Q9HCE3 1301 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 PIK3C2GO75747 1445 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 TNFAIP3P21580 790 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 TNNC1P63316 161 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 PARP10Q53GL7 1025 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 KBTBD3Q8NAB2 608 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 MAK16Q9BXY0 300 aaKnown RBP12.84□□□□□ -0.35
USP53-201ENST00000274030 TRIM31Q9BZY9 425 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 FAM169AQ9Y6X4 670 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 FANCCQ00597 558 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 GCKRQ14397 625 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 WDR44Q5JSH3 913 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 CFAP58Q5T655 872 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 BIN2Q9UBW5 565 aaPredicted RBP12.84□□□□□ -0.35
USP53-201ENST00000274030 MTRF1LQ9UGC7 380 aaKnown RBP12.84□□□□□ -0.35
USP53-201ENST00000274030 ZFYVE9O95405 1425 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 NELFCDQ8IXH7 590 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 CMTR1Q8N1G2 835 aaKnown RBP12.84□□□□□ -0.35
USP53-201ENST00000274030 ANKS4BQ8N8V4 417 aa12.84□□□□□ -0.35
USP53-201ENST00000274030 ZNF518AQ6AHZ1 1483 aa12.83□□□□□ -0.35
USP53-201ENST00000274030 ZMYM3Q14202 1370 aa12.83□□□□□ -0.35
USP53-201ENST00000274030 ZNF202O95125 648 aa12.83□□□□□ -0.35
USP53-201ENST00000274030 HPDP32754 393 aaPredicted RBP12.83□□□□□ -0.35
USP53-201ENST00000274030 SLC1A4P43007 532 aa12.83□□□□□ -0.35
USP53-201ENST00000274030 CCDC121Q6ZUS5 278 aa12.83□□□□□ -0.35
USP53-201ENST00000274030 CEP57Q86XR8 500 aa12.83□□□□□ -0.35
USP53-201ENST00000274030 STMN4Q9H169 189 aaPredicted RBP12.83□□□□□ -0.35
USP53-201ENST00000274030 MTUS1Q9ULD2 1270 aa12.83□□□□□ -0.35
USP53-201ENST00000274030 RAPGEF6Q8TEU7 1601 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 HERC4Q5GLZ8 1057 aaPredicted RBP12.83□□□□□ -0.36
USP53-201ENST00000274030 SEL1L2Q5TEA6 688 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 NBPF14Q5TI25 921 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 SNX29Q8TEQ0 813 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 TGFBRAP1Q8WUH2 860 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 SMC6Q96SB8 1091 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 PICK1Q9NRD5 415 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 TAB2Q9NYJ8 693 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 PPP1R21Q6ZMI0 780 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 MSANTD4Q8NCY6 345 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 AGTPBP1Q9UPW5 1226 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 NUP153P49790 1475 aaKnown RBP12.83□□□□□ -0.36
USP53-201ENST00000274030 UGGT2Q9NYU1 1516 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 KRT40Q6A162 431 aa12.83□□□□□ -0.36
USP53-201ENST00000274030 TRMT44Q8IYL2 757 aaKnown RBP12.83□□□□□ -0.36
USP53-201ENST00000274030 SPATA5Q8NB90 893 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms