RNA–Protein interactions for RNA: ENST00000264555.9

PHRF1-201, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-201ENST00000264555 ADALQ6DHV7 355 aa18.93■□□□□ 0.62
PHRF1-201ENST00000264555 PUS3Q9BZE2 481 aaKnown RBP18.93■□□□□ 0.62
PHRF1-201ENST00000264555 ZSWIM4Q9H7M6 989 aa18.93■□□□□ 0.62
PHRF1-201ENST00000264555 POLR2DO15514 142 aaKnown RBP18.93■□□□□ 0.62
PHRF1-201ENST00000264555 KRT83P78385 493 aa18.93■□□□□ 0.62
PHRF1-201ENST00000264555 SPAG5Q96R06 1193 aa18.93■□□□□ 0.62
PHRF1-201ENST00000264555 GREM2Q9H772 168 aa18.93■□□□□ 0.62
PHRF1-201ENST00000264555 USP31Q70CQ4 1352 aa18.93■□□□□ 0.62
PHRF1-201ENST00000264555 UBE3CQ15386 1083 aa18.93■□□□□ 0.62
PHRF1-201ENST00000264555 TTC38Q5R3I4 469 aa18.93■□□□□ 0.62
PHRF1-201ENST00000264555 MLKLQ8NB16 471 aa18.93■□□□□ 0.62
PHRF1-201ENST00000264555 ARHGEF40Q8TER5 1519 aa18.93■□□□□ 0.62
PHRF1-201ENST00000264555 CKAP4Q07065 602 aaKnown RBP18.93■□□□□ 0.62
PHRF1-201ENST00000264555 PI4K2BQ8TCG2 481 aa18.93■□□□□ 0.62
PHRF1-201ENST00000264555 CCDC172P0C7W6 258 aa18.93■□□□□ 0.62
PHRF1-201ENST00000264555 IFI16Q16666 785 aaKnown RBP18.93■□□□□ 0.62
PHRF1-201ENST00000264555 LETM2Q2VYF4 491 aa18.93■□□□□ 0.62
PHRF1-201ENST00000264555 HEG1Q9ULI3 1381 aa18.92■□□□□ 0.62
PHRF1-201ENST00000264555 IL6STP40189 918 aaPredicted RBP18.92■□□□□ 0.62
PHRF1-201ENST00000264555 PPP1R2P41236 205 aa18.92■□□□□ 0.62
PHRF1-201ENST00000264555 NOP2P46087 812 aaKnown RBP18.92■□□□□ 0.62
PHRF1-201ENST00000264555 CNGA4Q8IV77 575 aa18.92■□□□□ 0.62
PHRF1-201ENST00000264555 CTAGE15A4D2H0 777 aa18.92■□□□□ 0.62
PHRF1-201ENST00000264555 CTAGE8P0CG41 777 aa18.92■□□□□ 0.62
PHRF1-201ENST00000264555 PTPN12Q05209 780 aaKnown RBP18.92■□□□□ 0.62
PHRF1-201ENST00000264555 CTAGE6Q86UF2 777 aa18.92■□□□□ 0.62
PHRF1-201ENST00000264555 CTAGE4Q8IX94 777 aa18.92■□□□□ 0.62
PHRF1-201ENST00000264555 ERICH4A6NGS2 130 aa18.91■□□□□ 0.62
PHRF1-201ENST00000264555 MRPL12P52815 198 aaKnown RBP18.91■□□□□ 0.62
PHRF1-201ENST00000264555 CNKSR2Q8WXI2 1034 aa18.91■□□□□ 0.62
PHRF1-201ENST00000264555 TMCO5BA8MYB1 307 aa18.91■□□□□ 0.62
PHRF1-201ENST00000264555 MMRN2Q9H8L6 949 aa18.91■□□□□ 0.62
PHRF1-201ENST00000264555 CTAGE9A4FU28 777 aa18.91■□□□□ 0.62
PHRF1-201ENST00000264555 KCNJ14Q9UNX9 436 aa18.91■□□□□ 0.62
PHRF1-201ENST00000264555 ZMYM6O95789 1325 aa18.91■□□□□ 0.62
PHRF1-201ENST00000264555 PDIA3P30101 505 aaKnown RBP18.9■□□□□ 0.62
PHRF1-201ENST00000264555 FANCCQ00597 558 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 ZNF589Q86UQ0 364 aaPredicted RBP18.9■□□□□ 0.62
PHRF1-201ENST00000264555 FERMT2Q96AC1 680 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 BAG1Q99933 345 aaPredicted RBP18.9■□□□□ 0.62
PHRF1-201ENST00000264555 LZTS2Q9BRK4 669 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 ARPP21Q9UBL0 812 aaPredicted RBP18.9■□□□□ 0.62
PHRF1-201ENST00000264555 PTPRMP28827 1452 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 SASH1O94885 1247 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 ZNF654Q8IZM8 581 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 PLIN2Q99541 437 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 IMPACTQ9P2X3 320 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 POLR3GO15318 223 aaPredicted RBP18.9■□□□□ 0.62
PHRF1-201ENST00000264555 CYP21A2P08686 494 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 ADORA1P30542 326 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 SEPT7Q16181 437 aaKnown RBP18.9■□□□□ 0.62
PHRF1-201ENST00000264555 CEP112Q8N8E3 955 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 MAST3O60307 1309 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 AKR1B15C9JRZ8 316 aaPredicted RBP18.9■□□□□ 0.62
PHRF1-201ENST00000264555 LIG1P18858 919 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 BCAMP50895 628 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 SV2BQ7L1I2 683 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 USP28Q96RU2 1077 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 LUC7L2Q9Y383 392 aaKnown RBP18.9■□□□□ 0.62
PHRF1-201ENST00000264555 KRT86O43790 486 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 NEFHP12036 1026 aa18.9■□□□□ 0.62
PHRF1-201ENST00000264555 TRMT1LQ7Z2T5 733 aaKnown RBP18.9■□□□□ 0.62
PHRF1-201ENST00000264555 USP8P40818 1118 aa18.89■□□□□ 0.62
PHRF1-201ENST00000264555 SCRN1Q12765 414 aa18.89■□□□□ 0.62
PHRF1-201ENST00000264555 LOC102724428A0A0B4J2F2 783 aa18.89■□□□□ 0.61
PHRF1-201ENST00000264555 SIK1P57059 783 aa18.89■□□□□ 0.61
PHRF1-201ENST00000264555 MTX1Q13505 466 aa18.89■□□□□ 0.61
PHRF1-201ENST00000264555 PPP1R9BQ96SB3 815 aa18.89■□□□□ 0.61
PHRF1-201ENST00000264555 DIP2CQ9Y2E4 1556 aa18.89■□□□□ 0.61
PHRF1-201ENST00000264555 DLC1Q96QB1 1528 aa18.89■□□□□ 0.61
PHRF1-201ENST00000264555 SPECC1Q5M775 1068 aa18.89■□□□□ 0.61
PHRF1-201ENST00000264555 TAF3Q5VWG9 929 aa18.89■□□□□ 0.61
PHRF1-201ENST00000264555 CCDC42Q96M95 316 aa18.89■□□□□ 0.61
PHRF1-201ENST00000264555 SYT10Q6XYQ8 523 aa18.89■□□□□ 0.61
PHRF1-201ENST00000264555 TAX1BP1Q86VP1 789 aa18.89■□□□□ 0.61
PHRF1-201ENST00000264555 TACC1O75410 805 aa18.88■□□□□ 0.61
PHRF1-201ENST00000264555 TUBB4BP68371 445 aa18.88■□□□□ 0.61
PHRF1-201ENST00000264555 KIF5AQ12840 1032 aa18.88■□□□□ 0.61
PHRF1-201ENST00000264555 TBC1D5Q92609 795 aa18.88■□□□□ 0.61
PHRF1-201ENST00000264555 ARFGAP3Q9NP61 516 aa18.88■□□□□ 0.61
PHRF1-201ENST00000264555 MED23Q9ULK4 1368 aa18.88■□□□□ 0.61
PHRF1-201ENST00000264555 SPDYE4A6NLX3 237 aa18.88■□□□□ 0.61
PHRF1-201ENST00000264555 POSTNQ15063 836 aa18.88■□□□□ 0.61
PHRF1-201ENST00000264555 NEXMIFQ5QGS0 1516 aa18.88■□□□□ 0.61
PHRF1-201ENST00000264555 NR1I2O75469 434 aa18.88■□□□□ 0.61
PHRF1-201ENST00000264555 PHKA1P46020 1223 aa18.88■□□□□ 0.61
PHRF1-201ENST00000264555 CHRNDQ07001 517 aa18.88■□□□□ 0.61
PHRF1-201ENST00000264555 CCDC24Q8N4L8 307 aa18.88■□□□□ 0.61
PHRF1-201ENST00000264555 ZBTB1Q9Y2K1 713 aa18.88■□□□□ 0.61
PHRF1-201ENST00000264555 ADD1P35611 737 aaKnown RBP18.87■□□□□ 0.61
PHRF1-201ENST00000264555 TBC1D22AQ8WUA7 517 aa18.87■□□□□ 0.61
PHRF1-201ENST00000264555 CTNND2Q9UQB3 1225 aa18.87■□□□□ 0.61
PHRF1-201ENST00000264555 GYG1P46976 350 aa18.87■□□□□ 0.61
PHRF1-201ENST00000264555 TFAP4Q01664 338 aa18.87■□□□□ 0.61
PHRF1-201ENST00000264555 USP17L12C9JPN9 530 aa18.87■□□□□ 0.61
PHRF1-201ENST00000264555 USP17L21D6R901 530 aa18.87■□□□□ 0.61
PHRF1-201ENST00000264555 CRKLP46109 303 aaKnown RBP18.87■□□□□ 0.61
PHRF1-201ENST00000264555 ZSCAN10Q96SZ4 725 aaPredicted RBP18.87■□□□□ 0.61
PHRF1-201ENST00000264555 GPCPD1Q9NPB8 672 aa18.87■□□□□ 0.61
PHRF1-201ENST00000264555 PRDM10Q9NQV6 1147 aa18.87■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms