RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 COL9A2Q14055 689 aaPredicted RBP7.16□□□□□ -1.26
CCDC54-201ENST00000261058 INPP5AQ14642 412 aa7.16□□□□□ -1.26
CCDC54-201ENST00000261058 REC114Q7Z4M0 266 aa7.16□□□□□ -1.26
CCDC54-201ENST00000261058 NACC1Q96RE7 527 aa7.16□□□□□ -1.26
CCDC54-201ENST00000261058 TACC3Q9Y6A5 838 aa7.16□□□□□ -1.26
CCDC54-201ENST00000261058 SNCAIPQ9Y6H5 919 aa7.16□□□□□ -1.26
CCDC54-201ENST00000261058 PRR36Q9H6K5 1346 aa7.15□□□□□ -1.26
CCDC54-201ENST00000261058 C9orf172C9J069 976 aa7.15□□□□□ -1.27
CCDC54-201ENST00000261058 TMPRSS2O15393 492 aa7.15□□□□□ -1.27
CCDC54-201ENST00000261058 CDK8P49336 464 aa7.15□□□□□ -1.27
CCDC54-201ENST00000261058 ERVK-24P63145 666 aa7.15□□□□□ -1.27
CCDC54-201ENST00000261058 NRG1Q02297 640 aaPredicted RBP7.15□□□□□ -1.27
CCDC54-201ENST00000261058 APOBRQ0VD83 1088 aa7.15□□□□□ -1.27
CCDC54-201ENST00000261058 ADGRE1Q14246 886 aa7.15□□□□□ -1.27
CCDC54-201ENST00000261058 LRFN4Q6PJG9 635 aa7.15□□□□□ -1.27
CCDC54-201ENST00000261058 CYFIP1Q7L576 1253 aa7.15□□□□□ -1.27
CCDC54-201ENST00000261058 JARID2Q92833 1246 aaPredicted RBP7.15□□□□□ -1.27
CCDC54-201ENST00000261058 SEC16BQ96JE7 1060 aa7.15□□□□□ -1.27
CCDC54-201ENST00000261058 CRIM1Q9NZV1 1036 aa7.15□□□□□ -1.27
CCDC54-201ENST00000261058 PPP1R9AQ9ULJ8 1098 aa7.15□□□□□ -1.27
CCDC54-201ENST00000261058 PCDHA4Q9UN74 947 aa7.15□□□□□ -1.27
CCDC54-201ENST00000261058 FGRP09769 529 aa7.14□□□□□ -1.27
CCDC54-201ENST00000261058 ADH5P11766 374 aa7.14□□□□□ -1.27
CCDC54-201ENST00000261058 MBTPS1Q14703 1052 aa7.14□□□□□ -1.27
CCDC54-201ENST00000261058 ANKRD34AQ69YU3 496 aa7.14□□□□□ -1.27
CCDC54-201ENST00000261058 REXO1Q8N1G1 1221 aaKnown RBP7.14□□□□□ -1.27
CCDC54-201ENST00000261058 PLPPR2Q96GM1 343 aa7.14□□□□□ -1.27
CCDC54-201ENST00000261058 ACSBG1Q96GR2 724 aa7.14□□□□□ -1.27
CCDC54-201ENST00000261058 AKTIPQ9H8T0 292 aa7.14□□□□□ -1.27
CCDC54-201ENST00000261058 CYP4F12Q9HCS2 524 aa7.14□□□□□ -1.27
CCDC54-201ENST00000261058 POLR3KQ9Y2Y1 108 aaPredicted RBP7.14□□□□□ -1.27
CCDC54-201ENST00000261058 ATE1O95260 518 aa7.13□□□□□ -1.27
CCDC54-201ENST00000261058 SLFN14P0C7P3 912 aa7.13□□□□□ -1.27
CCDC54-201ENST00000261058 NTF4P34130 210 aa7.13□□□□□ -1.27
CCDC54-201ENST00000261058 ID3Q02535 119 aa7.13□□□□□ -1.27
CCDC54-201ENST00000261058 CWF19L2Q2TBE0 894 aaKnown RBP7.13□□□□□ -1.27
CCDC54-201ENST00000261058 WIPI1Q5MNZ9 446 aaPredicted RBP7.13□□□□□ -1.27
CCDC54-201ENST00000261058 NUTM2GQ5VZR2 741 aa7.13□□□□□ -1.27
CCDC54-201ENST00000261058 AGGF1Q8N302 714 aaeCLIP7.13□□□□□ -1.27
CCDC54-201ENST00000261058 SREK1Q8WXA9 508 aaKnown RBP7.13□□□□□ -1.27
CCDC54-201ENST00000261058 NKD1Q969G9 470 aa7.13□□□□□ -1.27
CCDC54-201ENST00000261058 KRBA1A5PL33 1030 aa7.12□□□□□ -1.27
CCDC54-201ENST00000261058 BPNT1O95861 308 aa7.12□□□□□ -1.27
CCDC54-201ENST00000261058 NOS3P29474 1203 aa7.12□□□□□ -1.27
CCDC54-201ENST00000261058 ARID5AQ03989 594 aa7.12□□□□□ -1.27
CCDC54-201ENST00000261058 SOX4Q06945 474 aaPredicted RBP7.12□□□□□ -1.27
CCDC54-201ENST00000261058 HDXQ7Z353 690 aa7.12□□□□□ -1.27
CCDC54-201ENST00000261058 EHMT1Q9H9B1 1298 aa7.12□□□□□ -1.27
CCDC54-201ENST00000261058 GINM1Q9NU53 330 aa7.12□□□□□ -1.27
CCDC54-201ENST00000261058 TLR3O15455 904 aaKnown RBP7.11□□□□□ -1.27
CCDC54-201ENST00000261058 ALX3O95076 343 aa7.11□□□□□ -1.27
CCDC54-201ENST00000261058 SEZ6Q53EL9 994 aa7.11□□□□□ -1.27
CCDC54-201ENST00000261058 DIEXFQ68CQ4 756 aaKnown RBP7.11□□□□□ -1.27
CCDC54-201ENST00000261058 MCF2L2Q86YR7 1114 aa7.11□□□□□ -1.27
CCDC54-201ENST00000261058 DZIP1LQ8IYY4 767 aaKnown RBP7.11□□□□□ -1.27
CCDC54-201ENST00000261058 C2CD4AQ8NCU7 369 aaPredicted RBP7.11□□□□□ -1.27
CCDC54-201ENST00000261058 WFDC12Q8WWY7 111 aa7.11□□□□□ -1.27
CCDC54-201ENST00000261058 FAM46AQ96IP4 442 aaKnown RBP7.11□□□□□ -1.27
CCDC54-201ENST00000261058 DCAF5Q96JK2 942 aa7.11□□□□□ -1.27
CCDC54-201ENST00000261058 FANCD2OSQ96PS1 177 aa7.11□□□□□ -1.27
CCDC54-201ENST00000261058 BRMS1Q9HCU9 246 aa7.11□□□□□ -1.27
CCDC54-201ENST00000261058 DISC1Q9NRI5 854 aa7.11□□□□□ -1.27
CCDC54-201ENST00000261058 APBA3O96018 575 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 SF3A1Q15459 793 aaKnown RBP7.1□□□□□ -1.27
CCDC54-201ENST00000261058 VPS37DQ86XT2 251 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 SSBP4Q9BWG4 385 aaPredicted RBP7.1□□□□□ -1.27
CCDC54-201ENST00000261058 RAD18Q9NS91 495 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 PRKAG2Q9UGJ0 569 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 USP21Q9UK80 565 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 EFR3BQ9Y2G0 817 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 HIF3AQ9Y2N7 669 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 DCDC2CA8MYV0 355 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 FANCGO15287 622 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 DRD2P14416 443 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 CHRNA4P43681 627 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 PREPP48147 710 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 ZNF165P49910 485 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 UVSSAQ2YD98 709 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 AKAP4Q5JQC9 854 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 ZBTB37Q5TC79 503 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 FDX2Q6P4F2 183 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 TXNRD3Q86VQ6 643 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 RNF214Q8ND24 703 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 ARMC5Q96C12 935 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 UBL7Q96S82 380 aaPredicted RBP7.1□□□□□ -1.27
CCDC54-201ENST00000261058 CEP41Q9BYV8 373 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 ATXN3LQ9H3M9 355 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 STRIP2Q9ULQ0 834 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 ZNRF3Q9ULT6 936 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 ACTL7BQ9Y614 415 aa7.1□□□□□ -1.27
CCDC54-201ENST00000261058 DNAJA1P31689 397 aaKnown RBP7.09□□□□□ -1.28
CCDC54-201ENST00000261058 IREB2P48200 963 aaKnown RBP7.09□□□□□ -1.28
CCDC54-201ENST00000261058 NASPP49321 788 aaPredicted RBP7.09□□□□□ -1.28
CCDC54-201ENST00000261058 TMEM201Q5SNT2 666 aa7.09□□□□□ -1.28
CCDC54-201ENST00000261058 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.09□□□□□ -1.28
CCDC54-201ENST00000261058 CD163Q86VB7 1156 aa7.09□□□□□ -1.28
CCDC54-201ENST00000261058 C12orf40Q86WS4 652 aa7.09□□□□□ -1.28
CCDC54-201ENST00000261058 C12orf50Q8NA57 414 aaPredicted RBP7.09□□□□□ -1.28
CCDC54-201ENST00000261058 RBBP8NLQ8NC74 664 aaPredicted RBP7.09□□□□□ -1.28
CCDC54-201ENST00000261058 ELMO3Q96BJ8 720 aa7.09□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms