RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 EIF4ENIF1Q9NRA8 985 aaKnown RBP21.58■■□□□ 1.05
CPSF3-201ENST00000238112 ZBTB1Q9Y2K1 713 aa21.58■■□□□ 1.05
CPSF3-201ENST00000238112 DMTNQ08495 405 aa21.58■■□□□ 1.04
CPSF3-201ENST00000238112 MAGEB6Q8N7X4 407 aa21.58■■□□□ 1.04
CPSF3-201ENST00000238112 INCENPQ9NQS7 918 aa21.58■■□□□ 1.04
CPSF3-201ENST00000238112 FAM217BQ9NTX9 383 aaPredicted RBP21.58■■□□□ 1.04
CPSF3-201ENST00000238112 OGFRQ9NZT2 677 aa21.58■■□□□ 1.04
CPSF3-201ENST00000238112 PRDM4Q9UKN5 801 aa21.58■■□□□ 1.04
CPSF3-201ENST00000238112 STK36Q9NRP7 1315 aa21.58■■□□□ 1.04
CPSF3-201ENST00000238112 MBD4O95243 580 aa21.57■■□□□ 1.04
CPSF3-201ENST00000238112 SERPINC1P01008 464 aa21.57■■□□□ 1.04
CPSF3-201ENST00000238112 ATP1A3P13637 1013 aa21.57■■□□□ 1.04
CPSF3-201ENST00000238112 SLC5A1P13866 664 aa21.57■■□□□ 1.04
CPSF3-201ENST00000238112 CTDSPL2Q05D32 466 aa21.57■■□□□ 1.04
CPSF3-201ENST00000238112 CNNM3Q8NE01 707 aa21.57■■□□□ 1.04
CPSF3-201ENST00000238112 EPB41L4AQ9HCS5 686 aaPredicted RBP21.57■■□□□ 1.04
CPSF3-201ENST00000238112 ZSWIM5Q9P217 1185 aa21.57■■□□□ 1.04
CPSF3-201ENST00000238112 UBASH3AP57075 661 aa21.57■■□□□ 1.04
CPSF3-201ENST00000238112 KRT23Q9C075 422 aa21.57■■□□□ 1.04
CPSF3-201ENST00000238112 KCNH3Q9ULD8 1083 aa21.57■■□□□ 1.04
CPSF3-201ENST00000238112 SLU7O95391 586 aaKnown RBP21.56■■□□□ 1.04
CPSF3-201ENST00000238112 FMNL1O95466 1100 aaPredicted RBP21.56■■□□□ 1.04
CPSF3-201ENST00000238112 FGFR2P21802 821 aa21.56■■□□□ 1.04
CPSF3-201ENST00000238112 HSPA2P54652 639 aa21.56■■□□□ 1.04
CPSF3-201ENST00000238112 SAFBQ15424 915 aaKnown RBP eCLIP21.56■■□□□ 1.04
CPSF3-201ENST00000238112 UTP14CQ5TAP6 766 aaKnown RBP21.56■■□□□ 1.04
CPSF3-201ENST00000238112 MYH3P11055 1940 aa21.56■■□□□ 1.04
CPSF3-201ENST00000238112 DZIP3Q86Y13 1208 aaKnown RBP21.56■■□□□ 1.04
CPSF3-201ENST00000238112 NOSTRINQ8IVI9 506 aa21.56■■□□□ 1.04
CPSF3-201ENST00000238112 KRI1Q8N9T8 703 aaKnown RBP21.56■■□□□ 1.04
CPSF3-201ENST00000238112 HSD3B7Q9H2F3 369 aa21.56■■□□□ 1.04
CPSF3-201ENST00000238112 ABCA3Q99758 1704 aa21.56■■□□□ 1.04
CPSF3-201ENST00000238112 LRP6O75581 1613 aa21.55■■□□□ 1.04
CPSF3-201ENST00000238112 ERVV-1B6SEH8 477 aa21.55■■□□□ 1.04
CPSF3-201ENST00000238112 CFAP100Q494V2 611 aa21.55■■□□□ 1.04
CPSF3-201ENST00000238112 AKNAD1Q5T1N1 836 aa21.55■■□□□ 1.04
CPSF3-201ENST00000238112 KRBA2Q6ZNG9 492 aa21.55■■□□□ 1.04
CPSF3-201ENST00000238112 MFSD6Q6ZSS7 791 aa21.55■■□□□ 1.04
CPSF3-201ENST00000238112 ARMT1Q9H993 441 aa21.55■■□□□ 1.04
CPSF3-201ENST00000238112 HOOK1Q9UJC3 728 aaKnown RBP21.55■■□□□ 1.04
CPSF3-201ENST00000238112 XIRP1Q702N8 1843 aaKnown RBP21.55■■□□□ 1.04
CPSF3-201ENST00000238112 RASGRF1Q13972 1273 aa21.55■■□□□ 1.04
CPSF3-201ENST00000238112 SART3Q15020 963 aaKnown RBP21.55■■□□□ 1.04
CPSF3-201ENST00000238112 LONRF3Q496Y0 759 aa21.55■■□□□ 1.04
CPSF3-201ENST00000238112 METTL16Q86W50 562 aaKnown RBP21.55■■□□□ 1.04
CPSF3-201ENST00000238112 ZNF397Q8NF99 534 aaPredicted RBP21.55■■□□□ 1.04
CPSF3-201ENST00000238112 SLC4A9Q96Q91 983 aa21.55■■□□□ 1.04
CPSF3-201ENST00000238112 GTPBP4Q9BZE4 634 aaKnown RBP21.55■■□□□ 1.04
CPSF3-201ENST00000238112 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.55■■□□□ 1.04
CPSF3-201ENST00000238112 V9GYY5 206 aaPredicted RBP21.55■■□□□ 1.04
CPSF3-201ENST00000238112 MYO5AQ9Y4I1 1855 aaKnown RBP21.54■■□□□ 1.04
CPSF3-201ENST00000238112 CCP110O43303 1012 aa21.54■■□□□ 1.04
CPSF3-201ENST00000238112 TUBB4AP04350 444 aa21.54■■□□□ 1.04
CPSF3-201ENST00000238112 IFNAR1P17181 557 aa21.54■■□□□ 1.04
CPSF3-201ENST00000238112 TRIM22Q8IYM9 498 aa21.54■■□□□ 1.04
CPSF3-201ENST00000238112 TOMM22Q9NS69 142 aa21.54■■□□□ 1.04
CPSF3-201ENST00000238112 UBE2Q2LH0YL09 131 aa21.54■■□□□ 1.04
CPSF3-201ENST00000238112 MYO1BO43795 1136 aa21.54■■□□□ 1.04
CPSF3-201ENST00000238112 TDO2P48775 406 aa21.54■■□□□ 1.04
CPSF3-201ENST00000238112 RRP12Q5JTH9 1297 aaKnown RBP21.54■■□□□ 1.04
CPSF3-201ENST00000238112 NACAP1Q9BZK3 213 aa21.54■■□□□ 1.04
CPSF3-201ENST00000238112 ANKRD36CQ5JPF3 1778 aa21.53■■□□□ 1.04
CPSF3-201ENST00000238112 SYT10Q6XYQ8 523 aa21.53■■□□□ 1.04
CPSF3-201ENST00000238112 MPHOSPH8Q99549 860 aa21.53■■□□□ 1.04
CPSF3-201ENST00000238112 PCDHA5Q9Y5H7 936 aa21.53■■□□□ 1.04
CPSF3-201ENST00000238112 BCL9O00512 1426 aa21.53■■□□□ 1.04
CPSF3-201ENST00000238112 MMP1P03956 469 aa21.52■■□□□ 1.04
CPSF3-201ENST00000238112 RTN1Q16799 776 aa21.52■■□□□ 1.04
CPSF3-201ENST00000238112 SYTL4Q96C24 671 aaPredicted RBP21.52■■□□□ 1.04
CPSF3-201ENST00000238112 DDX41Q9UJV9 622 aaKnown RBP21.52■■□□□ 1.04
CPSF3-201ENST00000238112 ERICH2A1L162 156 aa21.52■■□□□ 1.04
CPSF3-201ENST00000238112 GSG1L2A8MUP6 293 aa21.52■■□□□ 1.04
CPSF3-201ENST00000238112 BTBD18B2RXH4 712 aa21.52■■□□□ 1.04
CPSF3-201ENST00000238112 GNAT2P19087 354 aa21.52■■□□□ 1.04
CPSF3-201ENST00000238112 IL6STP40189 918 aaPredicted RBP21.52■■□□□ 1.04
CPSF3-201ENST00000238112 ELF2Q15723 593 aa21.52■■□□□ 1.04
CPSF3-201ENST00000238112 HOMER1Q86YM7 354 aa21.52■■□□□ 1.04
CPSF3-201ENST00000238112 DIS3L2Q8IYB7 885 aaKnown RBP21.52■■□□□ 1.04
CPSF3-201ENST00000238112 DPF2Q92785 391 aa21.52■■□□□ 1.04
CPSF3-201ENST00000238112 AK7Q96M32 723 aa21.52■■□□□ 1.04
CPSF3-201ENST00000238112 WTAPQ15007 396 aa21.51■■□□□ 1.03
CPSF3-201ENST00000238112 ZNF34Q8IZ26 560 aa21.51■■□□□ 1.03
CPSF3-201ENST00000238112 STAG1Q8WVM7 1258 aa21.51■■□□□ 1.03
CPSF3-201ENST00000238112 BTG4Q9NY30 223 aa21.51■■□□□ 1.03
CPSF3-201ENST00000238112 ECM29Q5VYK3 1845 aa21.51■■□□□ 1.03
CPSF3-201ENST00000238112 NID2Q14112 1375 aa21.51■■□□□ 1.03
CPSF3-201ENST00000238112 LRP5O75197 1615 aa21.51■■□□□ 1.03
CPSF3-201ENST00000238112 TOP1P11387 765 aaKnown RBP21.51■■□□□ 1.03
CPSF3-201ENST00000238112 ELOA2Q8IYF1 753 aaPredicted RBP21.51■■□□□ 1.03
CPSF3-201ENST00000238112 L2HGDHQ9H9P8 463 aa21.51■■□□□ 1.03
CPSF3-201ENST00000238112 FANCLQ9NW38 375 aa21.51■■□□□ 1.03
CPSF3-201ENST00000238112 TACC3Q9Y6A5 838 aa21.51■■□□□ 1.03
CPSF3-201ENST00000238112 SLC4A4Q9Y6R1 1079 aa21.51■■□□□ 1.03
CPSF3-201ENST00000238112 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.51■■□□□ 1.03
CPSF3-201ENST00000238112 GUCY1A2P33402 732 aa21.5■■□□□ 1.03
CPSF3-201ENST00000238112 RILPL1Q5EBL4 403 aa21.5■■□□□ 1.03
CPSF3-201ENST00000238112 SPECC1Q5M775 1068 aa21.5■■□□□ 1.03
CPSF3-201ENST00000238112 FOXP4Q8IVH2 680 aaPredicted RBP21.5■■□□□ 1.03
CPSF3-201ENST00000238112 VSTM4Q8IW00 320 aa21.5■■□□□ 1.03
CPSF3-201ENST00000238112 STK11IPQ8N1F8 1099 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms