RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 GGT6Q6P531 493 aa6.87□□□□□ -1.31
SCN1A-218ENST00000640036 EIF4G2P78344 907 aaKnown RBP eCLIP6.86□□□□□ -1.31
SCN1A-218ENST00000640036 BCL11AQ9H165 835 aa6.86□□□□□ -1.31
SCN1A-218ENST00000640036 CANXP27824 592 aaKnown RBP6.86□□□□□ -1.31
SCN1A-218ENST00000640036 SMARCA2P51531 1590 aa6.86□□□□□ -1.31
SCN1A-218ENST00000640036 RSF1Q96T23 1441 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-218ENST00000640036 ACIN1Q9UKV3 1341 aaKnown RBP6.84□□□□□ -1.31
SCN1A-218ENST00000640036 EFCAB2Q5VUJ9 269 aa6.84□□□□□ -1.31
SCN1A-218ENST00000640036 CHIC2Q9UKJ5 165 aa6.84□□□□□ -1.31
SCN1A-218ENST00000640036 CLIP1P30622 1438 aa6.83□□□□□ -1.32
SCN1A-218ENST00000640036 KIF27Q86VH2 1401 aa6.83□□□□□ -1.32
SCN1A-218ENST00000640036 EIF4G1Q04637 1599 aaKnown RBP6.82□□□□□ -1.32
SCN1A-218ENST00000640036 CEP164Q9UPV0 1460 aa6.82□□□□□ -1.32
SCN1A-218ENST00000640036 CSB-PGBD3P0DP91 1061 aa6.81□□□□□ -1.32
SCN1A-218ENST00000640036 WRNQ14191 1432 aaPredicted RBP eCLIP6.81□□□□□ -1.32
SCN1A-218ENST00000640036 ZCCHC6Q5VYS8 1495 aaKnown RBP6.81□□□□□ -1.32
SCN1A-218ENST00000640036 TMC1Q8TDI8 760 aa6.8□□□□□ -1.32
SCN1A-218ENST00000640036 KDM2AQ9Y2K7 1162 aa6.8□□□□□ -1.32
SCN1A-218ENST00000640036 BAZ1AQ9NRL2 1556 aaPredicted RBP6.8□□□□□ -1.32
SCN1A-218ENST00000640036 PAK3O75914 559 aaPredicted RBP6.79□□□□□ -1.32
SCN1A-218ENST00000640036 SOGA1O94964 1423 aa6.79□□□□□ -1.32
SCN1A-218ENST00000640036 MSH5O43196 834 aa6.78□□□□□ -1.32
SCN1A-218ENST00000640036 JPH4Q96JJ6 628 aa6.78□□□□□ -1.32
SCN1A-218ENST00000640036 EVA1CP58658 441 aa6.78□□□□□ -1.32
SCN1A-218ENST00000640036 LOC105371045A0A1W2PR82 267 aa6.78□□□□□ -1.32
SCN1A-218ENST00000640036 KLHL34Q8N239 644 aa6.78□□□□□ -1.32
SCN1A-218ENST00000640036 DMRT2Q9Y5R5 561 aa6.77□□□□□ -1.33
SCN1A-218ENST00000640036 GOLGA2Q08379 1002 aa6.76□□□□□ -1.33
SCN1A-218ENST00000640036 ATF3P18847 181 aa6.76□□□□□ -1.33
SCN1A-218ENST00000640036 G3V3G9 751 aa6.76□□□□□ -1.33
SCN1A-218ENST00000640036 DCAF8Q5TAQ9 597 aa6.76□□□□□ -1.33
SCN1A-218ENST00000640036 ZNF316A6NFI3 1004 aaPredicted RBP6.76□□□□□ -1.33
SCN1A-218ENST00000640036 ABCC8Q09428 1581 aa6.76□□□□□ -1.33
SCN1A-218ENST00000640036 RGL3Q3MIN7 710 aa6.76□□□□□ -1.33
SCN1A-218ENST00000640036 KAT6BQ8WYB5 2073 aa6.75□□□□□ -1.33
SCN1A-218ENST00000640036 RTL5Q5HYW3 569 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-218ENST00000640036 PPM1GO15355 546 aaPredicted RBP6.75□□□□□ -1.33
SCN1A-218ENST00000640036 CDCA8Q53HL2 280 aa6.75□□□□□ -1.33
SCN1A-218ENST00000640036 TRIM26Q12899 539 aaPredicted RBP6.74□□□□□ -1.33
SCN1A-218ENST00000640036 CADPSQ9ULU8 1353 aa6.74□□□□□ -1.33
SCN1A-218ENST00000640036 WASHC2CQ9Y4E1 1318 aa6.74□□□□□ -1.33
SCN1A-218ENST00000640036 TDRD9Q8NDG6 1382 aaKnown RBP6.74□□□□□ -1.33
SCN1A-218ENST00000640036 SRPK2P78362 688 aaKnown RBP6.74□□□□□ -1.33
SCN1A-218ENST00000640036 PIP4K2BP78356 416 aa6.73□□□□□ -1.33
SCN1A-218ENST00000640036 CCNB3Q8WWL7 1395 aa6.73□□□□□ -1.33
SCN1A-218ENST00000640036 CUX2O14529 1486 aa6.72□□□□□ -1.33
SCN1A-218ENST00000640036 TONSLQ96HA7 1378 aa6.72□□□□□ -1.33
SCN1A-218ENST00000640036 HMGB2P26583 209 aaKnown RBP6.72□□□□□ -1.33
SCN1A-218ENST00000640036 GLIPR1L2Q4G1C9 344 aa6.71□□□□□ -1.34
SCN1A-218ENST00000640036 CFAP53Q96M91 514 aa6.71□□□□□ -1.34
SCN1A-218ENST00000640036 SPAG9O60271 1321 aaKnown RBP6.7□□□□□ -1.34
SCN1A-218ENST00000640036 NGDNQ8NEJ9 315 aaKnown RBP6.7□□□□□ -1.34
SCN1A-218ENST00000640036 POGZQ7Z3K3 1410 aa6.7□□□□□ -1.34
SCN1A-218ENST00000640036 SOX12O15370 315 aa6.7□□□□□ -1.34
SCN1A-218ENST00000640036 KIF3BO15066 747 aa6.7□□□□□ -1.34
SCN1A-218ENST00000640036 PPP1R1BQ9UD71 204 aaPredicted RBP6.7□□□□□ -1.34
SCN1A-218ENST00000640036 PTPRGP23470 1445 aa6.7□□□□□ -1.34
SCN1A-218ENST00000640036 CARMIL1Q5VZK9 1371 aa6.7□□□□□ -1.34
SCN1A-218ENST00000640036 ANP32CO43423 234 aa6.7□□□□□ -1.34
SCN1A-218ENST00000640036 GTF2E1P29083 439 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-218ENST00000640036 RRP7BPQ9NSQ0 103 aa6.69□□□□□ -1.34
SCN1A-218ENST00000640036 WDR43Q15061 677 aaKnown RBP eCLIP6.69□□□□□ -1.34
SCN1A-218ENST00000640036 STK26Q9P289 416 aa6.68□□□□□ -1.34
SCN1A-218ENST00000640036 WASHC2AQ641Q2 1341 aa6.67□□□□□ -1.34
SCN1A-218ENST00000640036 RSPH4AQ5TD94 716 aa6.67□□□□□ -1.34
SCN1A-218ENST00000640036 CDK11BP21127 795 aaKnown RBP6.66□□□□□ -1.34
SCN1A-218ENST00000640036 NUDCQ9Y266 331 aa6.66□□□□□ -1.34
SCN1A-218ENST00000640036 FANCD2Q9BXW9 1451 aa6.65□□□□□ -1.34
SCN1A-218ENST00000640036 MYH16Q9H6N6 1097 aa6.65□□□□□ -1.34
SCN1A-218ENST00000640036 ZNF330Q9Y3S2 320 aaPredicted RBP6.65□□□□□ -1.34
SCN1A-218ENST00000640036 PNNQ9H307 717 aaKnown RBP6.65□□□□□ -1.34
SCN1A-218ENST00000640036 FHAD1B1AJZ9 1412 aa6.65□□□□□ -1.35
SCN1A-218ENST00000640036 HDGFL2Q7Z4V5 671 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-218ENST00000640036 ANP32BQ92688 251 aaKnown RBP6.64□□□□□ -1.35
SCN1A-218ENST00000640036 NUTM2BA6NNL0 878 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-218ENST00000640036 NUTM2EB1AL46 878 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-218ENST00000640036 NUTM2AQ8IVF1 878 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-218ENST00000640036 SAFB2Q14151 953 aaKnown RBP eCLIP6.64□□□□□ -1.35
SCN1A-218ENST00000640036 NUTM2DQ5VT03 806 aaPredicted RBP6.64□□□□□ -1.35
SCN1A-218ENST00000640036 CHMP4AQ9BY43 222 aa6.63□□□□□ -1.35
SCN1A-218ENST00000640036 EEA1Q15075 1411 aa6.63□□□□□ -1.35
SCN1A-218ENST00000640036 THEMISQ8N1K5 641 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-218ENST00000640036 TOM1O60784 492 aa6.63□□□□□ -1.35
SCN1A-218ENST00000640036 PSME1Q06323 249 aa6.63□□□□□ -1.35
SCN1A-218ENST00000640036 PROSER2Q86WR7 435 aaPredicted RBP6.63□□□□□ -1.35
SCN1A-218ENST00000640036 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.63□□□□□ -1.35
SCN1A-218ENST00000640036 GOLGA3Q08378 1498 aa6.63□□□□□ -1.35
SCN1A-218ENST00000640036 ISY1Q9ULR0 285 aaKnown RBP6.63□□□□□ -1.35
SCN1A-218ENST00000640036 RTF1Q92541 710 aaKnown RBP6.62□□□□□ -1.35
SCN1A-218ENST00000640036 KRI1Q8N9T8 703 aaKnown RBP6.61□□□□□ -1.35
SCN1A-218ENST00000640036 UBAP1LF5GYI3 381 aa6.61□□□□□ -1.35
SCN1A-218ENST00000640036 ANKLE2Q86XL3 938 aa6.61□□□□□ -1.35
SCN1A-218ENST00000640036 MAPK8IP3Q9UPT6 1336 aa6.61□□□□□ -1.35
SCN1A-218ENST00000640036 KNSTRNQ9Y448 316 aa6.61□□□□□ -1.35
SCN1A-218ENST00000640036 CC2D2AQ9P2K1 1620 aa6.61□□□□□ -1.35
SCN1A-218ENST00000640036 SYTL4Q96C24 671 aaPredicted RBP6.6□□□□□ -1.35
SCN1A-218ENST00000640036 DNAJC5BQ9UF47 199 aa6.6□□□□□ -1.35
SCN1A-218ENST00000640036 DCAF1Q9Y4B6 1507 aa6.6□□□□□ -1.35
SCN1A-218ENST00000640036 CWC22Q9HCG8 908 aaKnown RBP6.59□□□□□ -1.35
SCN1A-218ENST00000640036 NUTM2FA1L443 756 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms