RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 KLHL34Q8N239 644 aa7.74□□□□□ -1.17
SCN1A-216ENST00000637968 FAM43AQ8N2R8 423 aa7.74□□□□□ -1.17
SCN1A-216ENST00000637968 LAS1LQ9Y4W2 734 aaKnown RBP7.74□□□□□ -1.17
SCN1A-216ENST00000637968 PNNQ9H307 717 aaKnown RBP7.73□□□□□ -1.17
SCN1A-216ENST00000637968 BRPF3Q9ULD4 1205 aa7.73□□□□□ -1.17
SCN1A-216ENST00000637968 PPP4R2Q9NY27 417 aa7.73□□□□□ -1.17
SCN1A-216ENST00000637968 C11orf95C9JLR9 678 aaPredicted RBP7.71□□□□□ -1.18
SCN1A-216ENST00000637968 CANXP27824 592 aaKnown RBP7.71□□□□□ -1.18
SCN1A-216ENST00000637968 GSE1Q14687 1217 aa7.71□□□□□ -1.18
SCN1A-216ENST00000637968 TRIM52Q96A61 297 aa7.71□□□□□ -1.18
SCN1A-216ENST00000637968 ANP32CO43423 234 aa7.7□□□□□ -1.18
SCN1A-216ENST00000637968 HNRNPUL2Q1KMD3 747 aaKnown RBP7.7□□□□□ -1.18
SCN1A-216ENST00000637968 CDK11BP21127 795 aaKnown RBP7.7□□□□□ -1.18
SCN1A-216ENST00000637968 IRX6P78412 446 aaPredicted RBP7.7□□□□□ -1.18
SCN1A-216ENST00000637968 PAK3O75914 559 aaPredicted RBP7.68□□□□□ -1.18
SCN1A-216ENST00000637968 BBXQ8WY36 941 aaPredicted RBP7.66□□□□□ -1.18
SCN1A-216ENST00000637968 DDRGK1Q96HY6 314 aa7.66□□□□□ -1.18
SCN1A-216ENST00000637968 PAXIP1Q6ZW49 1069 aaPredicted RBP7.66□□□□□ -1.18
SCN1A-216ENST00000637968 L1TD1Q5T7N2 865 aaKnown RBP7.64□□□□□ -1.19
SCN1A-216ENST00000637968 NAP1L2Q9ULW6 460 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-216ENST00000637968 TRIM44Q96DX7 344 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-216ENST00000637968 HNRNPUQ00839 825 aaKnown RBP eCLIP7.62□□□□□ -1.19
SCN1A-216ENST00000637968 ATP1B4Q9UN42 357 aaPredicted RBP7.62□□□□□ -1.19
SCN1A-216ENST00000637968 BRD2P25440 801 aaKnown RBP7.61□□□□□ -1.19
SCN1A-216ENST00000637968 ARID4BQ4LE39 1312 aaPredicted RBP7.61□□□□□ -1.19
SCN1A-216ENST00000637968 HOMEZQ8IX15 550 aa7.61□□□□□ -1.19
SCN1A-216ENST00000637968 B4GALNT3Q6L9W6 998 aa7.61□□□□□ -1.19
SCN1A-216ENST00000637968 WASHC2CQ9Y4E1 1318 aa7.6□□□□□ -1.19
SCN1A-216ENST00000637968 WASHC2AQ641Q2 1341 aa7.59□□□□□ -1.19
SCN1A-216ENST00000637968 UBTFP17480 764 aaKnown RBP7.59□□□□□ -1.19
SCN1A-216ENST00000637968 HAP1P54257 671 aaPredicted RBP7.58□□□□□ -1.2
SCN1A-216ENST00000637968 CALD1Q05682 793 aaKnown RBP7.58□□□□□ -1.2
SCN1A-216ENST00000637968 DDX10Q13206 875 aaKnown RBP7.58□□□□□ -1.2
SCN1A-216ENST00000637968 CHMP4BQ9H444 224 aaKnown RBP7.57□□□□□ -1.2
SCN1A-216ENST00000637968 FRAT1Q92837 279 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-216ENST00000637968 AEBP2Q6ZN18 517 aaPredicted RBP7.57□□□□□ -1.2
SCN1A-216ENST00000637968 PDCL3Q9H2J4 239 aa7.57□□□□□ -1.2
SCN1A-216ENST00000637968 AMER1Q5JTC6 1135 aaPredicted RBP7.56□□□□□ -1.2
SCN1A-216ENST00000637968 ANP32BQ92688 251 aaKnown RBP7.56□□□□□ -1.2
SCN1A-216ENST00000637968 RGS3P49796 1198 aa7.56□□□□□ -1.2
SCN1A-216ENST00000637968 TPM2P07951 284 aa7.56□□□□□ -1.2
SCN1A-216ENST00000637968 MAP7D2Q96T17 732 aa7.56□□□□□ -1.2
SCN1A-216ENST00000637968 POLR3GLQ9BT43 218 aa7.56□□□□□ -1.2
SCN1A-216ENST00000637968 CCER2I3L3R5 266 aa7.55□□□□□ -1.2
SCN1A-216ENST00000637968 IPO4Q8TEX9 1081 aaKnown RBP7.55□□□□□ -1.2
SCN1A-216ENST00000637968 KCNH8Q96L42 1107 aa7.53□□□□□ -1.2
SCN1A-216ENST00000637968 DNTTIP2Q5QJE6 756 aaKnown RBP7.53□□□□□ -1.2
SCN1A-216ENST00000637968 DHX37Q8IY37 1157 aaKnown RBP7.53□□□□□ -1.2
SCN1A-216ENST00000637968 PTMSP20962 102 aa7.53□□□□□ -1.2
SCN1A-216ENST00000637968 TULP1O00294 542 aaPredicted RBP7.52□□□□□ -1.21
SCN1A-216ENST00000637968 NFKBIBQ15653 356 aa7.51□□□□□ -1.21
SCN1A-216ENST00000637968 CHMP4AQ9BY43 222 aa7.51□□□□□ -1.21
SCN1A-216ENST00000637968 RB1CC1Q8TDY2 1594 aa7.51□□□□□ -1.21
SCN1A-216ENST00000637968 APPP05067 770 aa7.49□□□□□ -1.21
SCN1A-216ENST00000637968 C14orf37Q86TY3 774 aa7.49□□□□□ -1.21
SCN1A-216ENST00000637968 MTERF4Q7Z6M4 381 aaKnown RBP7.49□□□□□ -1.21
SCN1A-216ENST00000637968 EEA1Q15075 1411 aa7.49□□□□□ -1.21
SCN1A-216ENST00000637968 RSPH4AQ5TD94 716 aa7.48□□□□□ -1.21
SCN1A-216ENST00000637968 FTSJ3Q8IY81 847 aaKnown RBP7.48□□□□□ -1.21
SCN1A-216ENST00000637968 TCERG1O14776 1098 aaKnown RBP7.47□□□□□ -1.21
SCN1A-216ENST00000637968 GOLGA6L3A6NEY3 463 aa7.47□□□□□ -1.21
SCN1A-216ENST00000637968 PLCD3Q8N3E9 789 aa7.46□□□□□ -1.22
SCN1A-216ENST00000637968 ARID3AQ99856 593 aa7.46□□□□□ -1.22
SCN1A-216ENST00000637968 ZHX1Q9UKY1 873 aaPredicted RBP7.46□□□□□ -1.22
SCN1A-216ENST00000637968 SCRIBQ14160 1630 aa7.46□□□□□ -1.22
SCN1A-216ENST00000637968 FAM13BQ9NYF5 915 aa7.45□□□□□ -1.22
SCN1A-216ENST00000637968 CLCN1P35523 988 aa7.45□□□□□ -1.22
SCN1A-216ENST00000637968 TAF3Q5VWG9 929 aa7.45□□□□□ -1.22
SCN1A-216ENST00000637968 FBLN2P98095 1184 aa7.45□□□□□ -1.22
SCN1A-216ENST00000637968 CENPJQ9HC77 1338 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-216ENST00000637968 SMAP1Q8IYB5 467 aaPredicted RBP7.44□□□□□ -1.22
SCN1A-216ENST00000637968 MSNP26038 577 aaKnown RBP7.43□□□□□ -1.22
SCN1A-216ENST00000637968 HSP90B1P14625 803 aaKnown RBP7.43□□□□□ -1.22
SCN1A-216ENST00000637968 IRX3P78415 501 aaPredicted RBP7.43□□□□□ -1.22
SCN1A-216ENST00000637968 MYH16Q9H6N6 1097 aa7.43□□□□□ -1.22
SCN1A-216ENST00000637968 NACADO15069 1562 aa7.43□□□□□ -1.22
SCN1A-216ENST00000637968 RRAGDQ9NQL2 400 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-216ENST00000637968 BCCIPQ9P287 314 aaKnown RBP eCLIP7.42□□□□□ -1.22
SCN1A-216ENST00000637968 BECN1Q14457 450 aa7.42□□□□□ -1.22
SCN1A-216ENST00000637968 ZFP91Q96JP5 570 aaPredicted RBP7.42□□□□□ -1.22
SCN1A-216ENST00000637968 PDE4AP27815 886 aa7.41□□□□□ -1.22
SCN1A-216ENST00000637968 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.41□□□□□ -1.22
SCN1A-216ENST00000637968 STAC3Q96MF2 364 aa7.4□□□□□ -1.22
SCN1A-216ENST00000637968 ZCCHC6Q5VYS8 1495 aaKnown RBP7.4□□□□□ -1.22
SCN1A-216ENST00000637968 GTF2E1P29083 439 aaPredicted RBP7.4□□□□□ -1.23
SCN1A-216ENST00000637968 PATL2C9JE40 543 aaKnown RBP7.39□□□□□ -1.23
SCN1A-216ENST00000637968 FAM9BQ8IZU0 186 aa7.39□□□□□ -1.23
SCN1A-216ENST00000637968 PTMAP06454 111 aaKnown RBP7.39□□□□□ -1.23
SCN1A-216ENST00000637968 TEX2Q8IWB9 1127 aa7.39□□□□□ -1.23
SCN1A-216ENST00000637968 KIAA1211Q6ZU35 1233 aa7.39□□□□□ -1.23
SCN1A-216ENST00000637968 TNNT3P45378 269 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-216ENST00000637968 ESPNB1AK53 854 aa7.38□□□□□ -1.23
SCN1A-216ENST00000637968 VGLL3A8MV65 326 aa7.38□□□□□ -1.23
SCN1A-216ENST00000637968 PRDM10Q9NQV6 1147 aa7.38□□□□□ -1.23
SCN1A-216ENST00000637968 FRAT2O75474 233 aaPredicted RBP7.37□□□□□ -1.23
SCN1A-216ENST00000637968 MS4A1P11836 297 aa7.37□□□□□ -1.23
SCN1A-216ENST00000637968 PPP4R3BQ5MIZ7 849 aa7.37□□□□□ -1.23
SCN1A-216ENST00000637968 WWC1Q8IX03 1113 aa7.36□□□□□ -1.23
SCN1A-216ENST00000637968 PRDM4Q9UKN5 801 aa7.36□□□□□ -1.23
SCN1A-216ENST00000637968 CLGNO14967 610 aa7.36□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms