RNA–Protein interactions for RNA: ENST00000635856.1

CHD2-221, Transcript of chromodomain helicase DNA binding protein 2, humanhuman

TSL 5

Gene CHD2, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD2-221ENST00000635856 HOMEZQ8IX15 550 aa8.27□□□□□ -1.09
CHD2-221ENST00000635856 EHMT2Q96KQ7 1210 aa8.27□□□□□ -1.09
CHD2-221ENST00000635856 NACADO15069 1562 aa8.25□□□□□ -1.09
CHD2-221ENST00000635856 CANXP27824 592 aaKnown RBP8.25□□□□□ -1.09
CHD2-221ENST00000635856 PAXIP1Q6ZW49 1069 aaPredicted RBP8.25□□□□□ -1.09
CHD2-221ENST00000635856 BRPF3Q9ULD4 1205 aa8.25□□□□□ -1.09
CHD2-221ENST00000635856 IPO9Q96P70 1041 aaKnown RBP8.25□□□□□ -1.09
CHD2-221ENST00000635856 BRD2P25440 801 aaKnown RBP8.23□□□□□ -1.09
CHD2-221ENST00000635856 TNNT2P45379 298 aaPredicted RBP8.22□□□□□ -1.09
CHD2-221ENST00000635856 BBXQ8WY36 941 aaPredicted RBP8.22□□□□□ -1.09
CHD2-221ENST00000635856 NAP1L2Q9ULW6 460 aaPredicted RBP8.22□□□□□ -1.09
CHD2-221ENST00000635856 GSE1Q14687 1217 aa8.22□□□□□ -1.09
CHD2-221ENST00000635856 PNNQ9H307 717 aaKnown RBP8.22□□□□□ -1.09
CHD2-221ENST00000635856 PABPN1Q86U42 306 aaKnown RBP eCLIP8.22□□□□□ -1.09
CHD2-221ENST00000635856 AEBP2Q6ZN18 517 aaPredicted RBP8.21□□□□□ -1.09
CHD2-221ENST00000635856 PAK3O75914 559 aaPredicted RBP8.2□□□□□ -1.1
CHD2-221ENST00000635856 PPP4R2Q9NY27 417 aa8.19□□□□□ -1.1
CHD2-221ENST00000635856 LAS1LQ9Y4W2 734 aaKnown RBP8.19□□□□□ -1.1
CHD2-221ENST00000635856 HAP1P54257 671 aaPredicted RBP8.18□□□□□ -1.1
CHD2-221ENST00000635856 TULP1O00294 542 aaPredicted RBP8.18□□□□□ -1.1
CHD2-221ENST00000635856 CDK11BP21127 795 aaKnown RBP8.18□□□□□ -1.1
CHD2-221ENST00000635856 NPM2Q86SE8 214 aaKnown RBP8.17□□□□□ -1.1
CHD2-221ENST00000635856 WASHC2CQ9Y4E1 1318 aa8.15□□□□□ -1.1
CHD2-221ENST00000635856 DHX37Q8IY37 1157 aaKnown RBP8.15□□□□□ -1.11
CHD2-221ENST00000635856 WASHC2AQ641Q2 1341 aa8.15□□□□□ -1.11
CHD2-221ENST00000635856 TRIM52Q96A61 297 aa8.14□□□□□ -1.11
CHD2-221ENST00000635856 CALD1Q05682 793 aaKnown RBP8.14□□□□□ -1.11
CHD2-221ENST00000635856 CHMP4AQ9BY43 222 aa8.14□□□□□ -1.11
CHD2-221ENST00000635856 CHMP4BQ9H444 224 aaKnown RBP8.14□□□□□ -1.11
CHD2-221ENST00000635856 IRX6P78412 446 aaPredicted RBP8.13□□□□□ -1.11
CHD2-221ENST00000635856 IPO4Q8TEX9 1081 aaKnown RBP8.13□□□□□ -1.11
CHD2-221ENST00000635856 C14orf37Q86TY3 774 aa8.11□□□□□ -1.11
CHD2-221ENST00000635856 DDRGK1Q96HY6 314 aa8.11□□□□□ -1.11
CHD2-221ENST00000635856 RSPH4AQ5TD94 716 aa8.11□□□□□ -1.11
CHD2-221ENST00000635856 ANP32CO43423 234 aa8.11□□□□□ -1.11
CHD2-221ENST00000635856 L1TD1Q5T7N2 865 aaKnown RBP8.11□□□□□ -1.11
CHD2-221ENST00000635856 POLR3GLQ9BT43 218 aa8.11□□□□□ -1.11
CHD2-221ENST00000635856 RGS3P49796 1198 aa8.1□□□□□ -1.11
CHD2-221ENST00000635856 PDCL3Q9H2J4 239 aa8.1□□□□□ -1.11
CHD2-221ENST00000635856 SCRIBQ14160 1630 aa8.1□□□□□ -1.11
CHD2-221ENST00000635856 TRIM44Q96DX7 344 aaPredicted RBP8.09□□□□□ -1.11
CHD2-221ENST00000635856 ARID4BQ4LE39 1312 aaPredicted RBP8.07□□□□□ -1.12
CHD2-221ENST00000635856 HNRNPUL2Q1KMD3 747 aaKnown RBP8.07□□□□□ -1.12
CHD2-221ENST00000635856 FRAT1Q92837 279 aaPredicted RBP8.07□□□□□ -1.12
CHD2-221ENST00000635856 TPM2P07951 284 aa8.06□□□□□ -1.12
CHD2-221ENST00000635856 ANP32BQ92688 251 aaKnown RBP8.06□□□□□ -1.12
CHD2-221ENST00000635856 MAP7D2Q96T17 732 aa8.06□□□□□ -1.12
CHD2-221ENST00000635856 FTSJ3Q8IY81 847 aaKnown RBP8.06□□□□□ -1.12
CHD2-221ENST00000635856 B4GALNT3Q6L9W6 998 aa8.05□□□□□ -1.12
CHD2-221ENST00000635856 PLPPR3Q6T4P5 718 aa8.05□□□□□ -1.12
CHD2-221ENST00000635856 PTMSP20962 102 aa8.04□□□□□ -1.12
CHD2-221ENST00000635856 BCCIPQ9P287 314 aaKnown RBP eCLIP8.04□□□□□ -1.12
CHD2-221ENST00000635856 HNRNPUQ00839 825 aaKnown RBP eCLIP8.04□□□□□ -1.12
CHD2-221ENST00000635856 HSP90B1P14625 803 aaKnown RBP8.03□□□□□ -1.12
CHD2-221ENST00000635856 DNTTIP2Q5QJE6 756 aaKnown RBP8.03□□□□□ -1.12
CHD2-221ENST00000635856 AMER1Q5JTC6 1135 aaPredicted RBP8.02□□□□□ -1.13
CHD2-221ENST00000635856 CCER2I3L3R5 266 aa8.01□□□□□ -1.13
CHD2-221ENST00000635856 APPP05067 770 aa8.01□□□□□ -1.13
CHD2-221ENST00000635856 KCNH8Q96L42 1107 aa8.01□□□□□ -1.13
CHD2-221ENST00000635856 ZFP91Q96JP5 570 aaPredicted RBP8□□□□□ -1.13
CHD2-221ENST00000635856 CENPJQ9HC77 1338 aaPredicted RBP8□□□□□ -1.13
CHD2-221ENST00000635856 PLCD3Q8N3E9 789 aa8□□□□□ -1.13
CHD2-221ENST00000635856 DDX10Q13206 875 aaKnown RBP7.99□□□□□ -1.13
CHD2-221ENST00000635856 NFKBIBQ15653 356 aa7.99□□□□□ -1.13
CHD2-221ENST00000635856 MTERF4Q7Z6M4 381 aaKnown RBP7.98□□□□□ -1.13
CHD2-221ENST00000635856 GTF2E1P29083 439 aaPredicted RBP7.98□□□□□ -1.13
CHD2-221ENST00000635856 TEX2Q8IWB9 1127 aa7.98□□□□□ -1.13
CHD2-221ENST00000635856 STAC3Q96MF2 364 aa7.98□□□□□ -1.13
CHD2-221ENST00000635856 CLCN1P35523 988 aa7.97□□□□□ -1.13
CHD2-221ENST00000635856 SMAP1Q8IYB5 467 aaPredicted RBP7.97□□□□□ -1.13
CHD2-221ENST00000635856 ZHX1Q9UKY1 873 aaPredicted RBP7.97□□□□□ -1.13
CHD2-221ENST00000635856 IRX3P78415 501 aaPredicted RBP7.96□□□□□ -1.13
CHD2-221ENST00000635856 TAF3Q5VWG9 929 aa7.96□□□□□ -1.13
CHD2-221ENST00000635856 PRDM4Q9UKN5 801 aa7.95□□□□□ -1.14
CHD2-221ENST00000635856 EEA1Q15075 1411 aa7.95□□□□□ -1.14
CHD2-221ENST00000635856 SAMD1Q6SPF0 538 aaPredicted RBP7.94□□□□□ -1.14
CHD2-221ENST00000635856 RRAGDQ9NQL2 400 aaPredicted RBP7.94□□□□□ -1.14
CHD2-221ENST00000635856 PTMAP06454 111 aaKnown RBP7.94□□□□□ -1.14
CHD2-221ENST00000635856 GOLGA6L3A6NEY3 463 aa7.92□□□□□ -1.14
CHD2-221ENST00000635856 PATL2C9JE40 543 aaKnown RBP7.92□□□□□ -1.14
CHD2-221ENST00000635856 SECISBP2LQ93073 1101 aaKnown RBP7.92□□□□□ -1.14
CHD2-221ENST00000635856 FAM13BQ9NYF5 915 aa7.92□□□□□ -1.14
CHD2-221ENST00000635856 TCERG1O14776 1098 aaKnown RBP7.92□□□□□ -1.14
CHD2-221ENST00000635856 WWC1Q8IX03 1113 aa7.91□□□□□ -1.14
CHD2-221ENST00000635856 CLGNO14967 610 aa7.91□□□□□ -1.14
CHD2-221ENST00000635856 VGLL3A8MV65 326 aa7.9□□□□□ -1.14
CHD2-221ENST00000635856 ARID3AQ99856 593 aa7.9□□□□□ -1.15
CHD2-221ENST00000635856 PPP4R3BQ5MIZ7 849 aa7.89□□□□□ -1.15
CHD2-221ENST00000635856 MYH16Q9H6N6 1097 aa7.89□□□□□ -1.15
CHD2-221ENST00000635856 FBXO3Q9UK99 471 aa7.89□□□□□ -1.15
CHD2-221ENST00000635856 CNPY4Q8N129 248 aa7.88□□□□□ -1.15
CHD2-221ENST00000635856 CNKSR2Q8WXI2 1034 aa7.88□□□□□ -1.15
CHD2-221ENST00000635856 KIF20AO95235 890 aa7.87□□□□□ -1.15
CHD2-221ENST00000635856 MSNP26038 577 aaKnown RBP7.87□□□□□ -1.15
CHD2-221ENST00000635856 UTP14CQ5TAP6 766 aaKnown RBP7.87□□□□□ -1.15
CHD2-221ENST00000635856 DCAF11Q8TEB1 546 aa7.87□□□□□ -1.15
CHD2-221ENST00000635856 CCDC9Q9Y3X0 531 aaKnown RBP7.87□□□□□ -1.15
CHD2-221ENST00000635856 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.87□□□□□ -1.15
CHD2-221ENST00000635856 KIAA1211Q6ZU35 1233 aa7.87□□□□□ -1.15
CHD2-221ENST00000635856 PDE4AP27815 886 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 6.7 ms