RNA–Protein interactions for RNA: ENST00000621266.4

COL4A6-210, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,627 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-210ENST00000621266 DNTTIP2Q5QJE6 756 aaKnown RBP13.23□□□□□ -0.29
COL4A6-210ENST00000621266 DDX10Q13206 875 aaKnown RBP13.21□□□□□ -0.29
COL4A6-210ENST00000621266 ZBTB7CA1YPR0 619 aa13.21□□□□□ -0.29
COL4A6-210ENST00000621266 ERICH6BQ5W0A0 696 aa13.21□□□□□ -0.3
COL4A6-210ENST00000621266 PTMAP06454 111 aaKnown RBP13.19□□□□□ -0.3
COL4A6-210ENST00000621266 DDRGK1Q96HY6 314 aa13.18□□□□□ -0.3
COL4A6-210ENST00000621266 NCLP19338 710 aaKnown RBP13.18□□□□□ -0.3
COL4A6-210ENST00000621266 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.16□□□□□ -0.3
COL4A6-210ENST00000621266 LAS1LQ9Y4W2 734 aaKnown RBP13.16□□□□□ -0.3
COL4A6-210ENST00000621266 C14orf37Q86TY3 774 aa13.14□□□□□ -0.31
COL4A6-210ENST00000621266 TPRNQ4KMQ1 711 aa13.14□□□□□ -0.31
COL4A6-210ENST00000621266 BECN1Q14457 450 aa13.13□□□□□ -0.31
COL4A6-210ENST00000621266 MIER1Q8N108 512 aa13.13□□□□□ -0.31
COL4A6-210ENST00000621266 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.13□□□□□ -0.31
COL4A6-210ENST00000621266 CHIC2Q9UKJ5 165 aa13.1□□□□□ -0.31
COL4A6-210ENST00000621266 DEKP35659 375 aaKnown RBP13.09□□□□□ -0.31
COL4A6-210ENST00000621266 GOLGA6L22H0YM25 854 aa13.08□□□□□ -0.31
COL4A6-210ENST00000621266 TMC1Q8TDI8 760 aa13.06□□□□□ -0.32
COL4A6-210ENST00000621266 PPM1GO15355 546 aaPredicted RBP13.06□□□□□ -0.32
COL4A6-210ENST00000621266 NOP58Q9Y2X3 529 aaKnown RBP13.05□□□□□ -0.32
COL4A6-210ENST00000621266 HAP1P54257 671 aaPredicted RBP13.03□□□□□ -0.32
COL4A6-210ENST00000621266 MRS2Q9HD23 443 aa13.03□□□□□ -0.32
COL4A6-210ENST00000621266 PPP1R15AO75807 674 aaPredicted RBP13.03□□□□□ -0.32
COL4A6-210ENST00000621266 ARID3AQ99856 593 aa13.03□□□□□ -0.32
COL4A6-210ENST00000621266 PLCB2Q00722 1185 aa13.02□□□□□ -0.33
COL4A6-210ENST00000621266 TONSLQ96HA7 1378 aa13.01□□□□□ -0.33
COL4A6-210ENST00000621266 NACADO15069 1562 aa13.01□□□□□ -0.33
COL4A6-210ENST00000621266 MLECQ14165 292 aa12.98□□□□□ -0.33
COL4A6-210ENST00000621266 WDR43Q15061 677 aaKnown RBP eCLIP12.98□□□□□ -0.33
COL4A6-210ENST00000621266 BAZ1BQ9UIG0 1483 aaKnown RBP12.98□□□□□ -0.33
COL4A6-210ENST00000621266 DCAF1Q9Y4B6 1507 aa12.97□□□□□ -0.33
COL4A6-210ENST00000621266 SENP3-EIF4A1A0A087X0R7 540 aa12.97□□□□□ -0.33
COL4A6-210ENST00000621266 MYH16Q9H6N6 1097 aa12.97□□□□□ -0.33
COL4A6-210ENST00000621266 KDM2AQ9Y2K7 1162 aa12.97□□□□□ -0.33
COL4A6-210ENST00000621266 RSF1Q96T23 1441 aaPredicted RBP12.96□□□□□ -0.33
COL4A6-210ENST00000621266 HIRIP3Q9BW71 556 aaPredicted RBP12.96□□□□□ -0.33
COL4A6-210ENST00000621266 ZRSR1Q15695 479 aaKnown RBP12.96□□□□□ -0.33
COL4A6-210ENST00000621266 SUPT16HQ9Y5B9 1047 aaKnown RBP12.95□□□□□ -0.34
COL4A6-210ENST00000621266 MTUS2Q5JR59 1369 aa12.95□□□□□ -0.34
COL4A6-210ENST00000621266 TSPY4P0CV99 314 aa12.93□□□□□ -0.34
COL4A6-210ENST00000621266 TSPY10P0CW01 314 aa12.93□□□□□ -0.34
COL4A6-210ENST00000621266 MSNP26038 577 aaKnown RBP12.92□□□□□ -0.34
COL4A6-210ENST00000621266 CLIP1P30622 1438 aa12.92□□□□□ -0.34
COL4A6-210ENST00000621266 EEA1Q15075 1411 aa12.91□□□□□ -0.34
COL4A6-210ENST00000621266 AEBP2Q6ZN18 517 aaPredicted RBP12.9□□□□□ -0.34
COL4A6-210ENST00000621266 TULP1O00294 542 aaPredicted RBP12.9□□□□□ -0.34
COL4A6-210ENST00000621266 CHAF1AQ13111 956 aaPredicted RBP12.89□□□□□ -0.35
COL4A6-210ENST00000621266 EIF4G1Q04637 1599 aaKnown RBP12.89□□□□□ -0.35
COL4A6-210ENST00000621266 LMOD2Q6P5Q4 547 aa12.89□□□□□ -0.35
COL4A6-210ENST00000621266 TNNT3P45378 269 aaPredicted RBP12.88□□□□□ -0.35
COL4A6-210ENST00000621266 PLEKHD1A6NEE1 506 aa12.87□□□□□ -0.35
COL4A6-210ENST00000621266 WRNQ14191 1432 aaPredicted RBP eCLIP12.87□□□□□ -0.35
COL4A6-210ENST00000621266 L1TD1Q5T7N2 865 aaKnown RBP12.86□□□□□ -0.35
COL4A6-210ENST00000621266 RGS3P49796 1198 aa12.85□□□□□ -0.35
COL4A6-210ENST00000621266 GOLGA3Q08378 1498 aa12.85□□□□□ -0.35
COL4A6-210ENST00000621266 GOLGA6L6A8MZA4 724 aa12.84□□□□□ -0.35
COL4A6-210ENST00000621266 TAOK2Q9UL54 1235 aa12.84□□□□□ -0.35
COL4A6-210ENST00000621266 HSP90AB1P08238 724 aaKnown RBP12.84□□□□□ -0.35
COL4A6-210ENST00000621266 SPRYD3Q8NCJ5 442 aa12.83□□□□□ -0.36
COL4A6-210ENST00000621266 RRP7BPQ9NSQ0 103 aa12.82□□□□□ -0.36
COL4A6-210ENST00000621266 PPP4R2Q9NY27 417 aa12.82□□□□□ -0.36
COL4A6-210ENST00000621266 RBM19Q9Y4C8 960 aaKnown RBP12.82□□□□□ -0.36
COL4A6-210ENST00000621266 KIF27Q86VH2 1401 aa12.81□□□□□ -0.36
COL4A6-210ENST00000621266 B4GALNT3Q6L9W6 998 aa12.81□□□□□ -0.36
COL4A6-210ENST00000621266 CASC1Q6TDU7 716 aa12.81□□□□□ -0.36
COL4A6-210ENST00000621266 BAZ1AQ9NRL2 1556 aaPredicted RBP12.79□□□□□ -0.36
COL4A6-210ENST00000621266 DRC7Q8IY82 874 aa12.79□□□□□ -0.36
COL4A6-210ENST00000621266 PNNQ9H307 717 aaKnown RBP12.78□□□□□ -0.36
COL4A6-210ENST00000621266 CEP162Q5TB80 1403 aa12.78□□□□□ -0.36
COL4A6-210ENST00000621266 VSIG10Q8N0Z9 540 aa12.78□□□□□ -0.36
COL4A6-210ENST00000621266 RGL3Q3MIN7 710 aa12.78□□□□□ -0.36
COL4A6-210ENST00000621266 CECR2Q9BXF3 1484 aa12.76□□□□□ -0.37
COL4A6-210ENST00000621266 NRDCO43847 1150 aa12.76□□□□□ -0.37
COL4A6-210ENST00000621266 GZF1Q9H116 711 aaPredicted RBP12.75□□□□□ -0.37
COL4A6-210ENST00000621266 CEP164Q9UPV0 1460 aa12.74□□□□□ -0.37
COL4A6-210ENST00000621266 HSP90AA2PQ14568 343 aaPredicted RBP12.73□□□□□ -0.37
COL4A6-210ENST00000621266 FTSJ3Q8IY81 847 aaKnown RBP12.73□□□□□ -0.37
COL4A6-210ENST00000621266 HSCBQ8IWL3 235 aa12.72□□□□□ -0.37
COL4A6-210ENST00000621266 TNIKQ9UKE5 1360 aa12.72□□□□□ -0.37
COL4A6-210ENST00000621266 NPHP1O15259 732 aa12.7□□□□□ -0.38
COL4A6-210ENST00000621266 CFDP1Q9UEE9 299 aaPredicted RBP12.7□□□□□ -0.38
COL4A6-210ENST00000621266 EIF4G2P78344 907 aaKnown RBP eCLIP12.68□□□□□ -0.38
COL4A6-210ENST00000621266 GOLGA6L4A6NEF3 574 aa12.68□□□□□ -0.38
COL4A6-210ENST00000621266 FRAT1Q92837 279 aaPredicted RBP12.67□□□□□ -0.38
COL4A6-210ENST00000621266 NAP1L2Q9ULW6 460 aaPredicted RBP12.67□□□□□ -0.38
COL4A6-210ENST00000621266 KIAA2012Q0VF49 1180 aa12.66□□□□□ -0.38
COL4A6-210ENST00000621266 MYO15BQ96JP2 1530 aa12.66□□□□□ -0.38
COL4A6-210ENST00000621266 NCBP3Q53F19 620 aaKnown RBP12.64□□□□□ -0.39
COL4A6-210ENST00000621266 SOX12O15370 315 aa12.64□□□□□ -0.39
COL4A6-210ENST00000621266 CYB5RLQ6IPT4 315 aa12.64□□□□□ -0.39
COL4A6-210ENST00000621266 NEUROD2Q15784 382 aa12.64□□□□□ -0.39
COL4A6-210ENST00000621266 POGKQ9P215 609 aa12.64□□□□□ -0.39
COL4A6-210ENST00000621266 FGD1P98174 961 aa12.63□□□□□ -0.39
COL4A6-210ENST00000621266 TIMELESSQ9UNS1 1208 aa12.63□□□□□ -0.39
COL4A6-210ENST00000621266 GGT6Q6P531 493 aa12.62□□□□□ -0.39
COL4A6-210ENST00000621266 GOLGA6L3A6NEY3 463 aa12.62□□□□□ -0.39
COL4A6-210ENST00000621266 SLKQ9H2G2 1235 aaPredicted RBP12.62□□□□□ -0.39
COL4A6-210ENST00000621266 RSPH6AQ9H0K4 717 aa12.62□□□□□ -0.39
COL4A6-210ENST00000621266 TSHZ2Q9NRE2 1034 aa12.62□□□□□ -0.39
COL4A6-210ENST00000621266 NOC3LQ8WTT2 800 aaKnown RBP12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms